Contig Data
morexGenes
Links



Map Locations of contig_1562441 (5376 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1562441

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12055 1 844 bp None Available Available None
MLOC_12056 10 2715 bp MLOC_12056.9 Available Available LOC_Os12g34870.2, FRAME:-2, EVALUE:3e-168, 13112.m08929 protein mitochondrial carrier protein, putative, expressed





CDS Structure of MLOC_12055






CDS Structure of MLOC_12056






Contig Sequence (5376 bp)

>contig_1562441 5376 assembly3_WGSMorex_rbca.fasta
CAGGCCCATGTAGTGGGACTAACCTAAAAGGAGGCTCCCAGCCATCTCCTGTTCCTGAGA
CAGCCGTCACACACAAAACACTTGTGCTGGAGGTACTCCTCTCTCCCTCCCGTACTCCTC
TCTCCCCTGCCGGGAATATGGGGAGCTTTATTGCTTTAATAACATCCGATTACAATCCGT
CGTAAGGCTGCTAATGAGGAAAGATGGACATTCCTCTAGCCATGAGTCTGAAACCAACAA
GGCACAGGCCTGCTTAGCAGAGGTTGGCCACACAATTACCATCCTTCGGGACTTTACTTA
ATGAACAGCATTTCCCATGGAAATAGAGTATCTACATCCGAGCTCAAATGCTCCCCTATG
AACATAAAATAAAAAAAAACTAGTTTTTTTTTTATTTTTTTGGTGGCAAACTATGACAAA
TGTTTTGTATGCTTGCAAAATTTCAGGACGAAATGACATTCGTTGAAGTCGTGGAAAAAA
AATAAAGGTTCCAAAAATGCTAGTTTTGTGAACATTTTGGAGTGCTGACTTTTTTTTGCC
ACATCTTCCATGAATGTCGTTTAGTTCTGAAATTTTGCAAGCGTATAAAAATTCTGTTGA
AGTTTATCACAAAAAGAAAATCATAACTTCTAAAAGAAATTACTACTTTTTTCGATTTTA
CTGTTCACGAGGGATCATTTAAGCTCGGGAGCGGAATACCAGTTATTCTTCTCTTCCTTG
GTACGTACATAAGGAGAACAAATTGTTTATCTAGGCACAGGCATCTACGGATGGTGGAGT
TGATTCTGCAATTGATTGCACTGTGTACTGTCATGCACTTTGGTACTGATGATCCATTTT
GTAATACAACTAAAATCATGATCTCTCATGACAAAAATCACCATCTGGATGTAAAATTGC
AATGTCTGAAGAAAATAAACAATGCGAAGCTCAGGCTGAAAATCAAAAATGGAGAGTACT
ACAGTATTATTCTGTCCTTGCTACTTCGTGACCTGAAGAGAAAATCTGATCGGTAGCAAG
TACTACAAGCTAACCATTGAAGCAGCCCAATTTCTTTATCCTTTCAAAAGTCAGTGCTAC
AATTCTGACAGACCCTCATGAATGTGGAAAACTGCTGATAAATGAATGGAGTAAAATATG
CCCTCCAACTAGACAAATATTGAACCGTATATTTCTTCAATCTCACGTGGTACTAGATAG
CAGACATTCCAGCGAGTTCGCGCAGCTTCTCGCACGCGACGAAAGTGATTGCTGTTTGAG
GGCCTAACCTTGCGAAGGTGGCAAACCCACTGCAAATTTTGCAGAGTTTGTTAGGAAATC
ACAATGGAAGGGGCTCAAGTAGAAACTATATTCAAGCTGTAGTAGCTGTACGTCCTGTAA
CAAATTTTCAATGTAAAAGGGACAATAACTAGAGCTTTGGATTGTGGTTCATATAATCAT
ATCCTACCAATCTTTAACTAGTTACCGTTTTCCATAAGTATACTGGTAAAGTTCATATTT
ATCATCGTTTTGTATCTGAAGAGGTGCAAATGATTTAACAACATAGCATGATCAAGACTT
GTTGAATTAAGCGAAAAATTACTCACCCTTTATAAAGTGATTTTACACCCTCCGTCAGGA
CAACCTGTGAACCGAGAAACGAATGTATAACATACATTAGCAGCCAGAAAGAAAGAACCA
GGTTAGCCAAAATTGGATGTACTAGTAGTTAAGATTTGAGATCTGAGACCTCCAAATAAA
TGGACGCATTTTTTGTTTACACTTCATTCCTAACATTAAACTATAGACATGACATGGGGT
CCTAGAAAATGTGAATCCTCTGATAGCTTGTGGGGATAACTTTCTATCTTACTGTTTTGA
ATAGATTGCCAATTGTTGCTACTCTGTAAAATTCATGCATTTCTACTCTTCATATATGCC
AATTGTCTCATATTGTGCCAACTACTATCTACTAACTGTGCAATTTGGTTCTGTGTTAAG
CGACTAGATTTAATATTATTTACCAACGTTTTTCAATTTCATTCACGGACGCACACTACA
AAACACAAATTTACAGCTAAGGATGGAGATTAACACCTGGTACGCACAGTGGAAACCGTT
CCTGTATACTCTGGCACCTTTGGACTCTCGTTGCAGCATTAGCCTTGTTTTGATCATGTC
AATAGGTGCAGTCACAAGTGTACCAGCCGTTCCAGCGATGCAACTCGACCTTTCAGCCGC
ACAGAAAAATAGCTATCAACATATTTCATCGAAGTACAGGCATCAAAATGCATAACAAAT
TTCACAGTACATGAGATGTAATTGAAAACCTTCTTCAAATGGTGTCCACATTAGCAAGAC
CTAAAGTAAATAAATAAGAAAATTCAGTGGTGGCTCATTTAGTAGTACTATGCAACAACT
GCATTCCTTCCAATCAAAAGACAAAACAAAAAATGTTGTATACCTGTTTGGCCTCATCAT
AAGTTGCCATTTGTGATGCCGTGAGGCAGCCTGCTCTCACCATGGCTGGGCCAACTCCTT
TCCAAAGCGCTTTGACTCCTTCCTCTGATACAATTTCCTTCATCACTCCAATTGTACTAA
TTCTGCTTGTACTCATCTGTGACCTCACCTATAGGATGTGCCCAGATCAAGATCAAGTCC
ATAAAACTATTTCATACTTTGAATTAAGTATCACAATACTGTACCTTTAAAACCTCCATA
GGATTTGTCAATGCAGTTGCTAGGGCACCAGCAACTACTCCAGATGCAAATTTAAAAGCA
AAGTTTGTTGAACCAAATGCATAGCTGCAGACATGTTTGCAAGGCTCATACAGTCCTAAT
CGAAGGCCACCATAGATGAGGGATCTAGTCAATGCTGGTGCAAATCCCAGGTAGAGTGAT
CGAGGCCCTTCCCTTTCTACCATTTGTTTAAATATTGCCCCCTGGTAGGATTATTAGAAC
TACTAAATTTAGCATTAAAAGCTCATACATAGCTGATGCGAGACCTGAGGTTGTGCTTAC
CATCCCAACTAAATTTCCTCTTTGCCCAGCAAGCTGCATTTGGAGTCTAATTTTGATAAC
ATCTGCAAGATGAGAACGATAGCACATATATTAAGGGTTTGTTATTTATTGGAGGAACAA
ACATACATAAAAGAGTGACTATCCTTTCGCAACGTTATCACTTGGCAGCATAGCAATAAA
CAACTCACTTTTATCAAGTCAGAAGCATGACACAGTTTCCAATCCAGGAGCTACTTGACA
AATATCTTGGAAAAATCACAACAAAACTGGGCCGTGCGACCTCCTTAGTTTTGGTCAAAC
CAATATATGTTTAATTTGCTTTGGATCCACATCCACATGTACCCTTTTGTTTGCTGATGT
TAACCATTATCCAGTATGGTCCAGACAAAAGAGGCTCATTTGTCGCATTCTGTTTTTCAG
TAGCAAACCCTACTAAATGTTTGAACGGGGAAATACACCAAGCCAAGAATTTAAACAGAA
TGCACTGATTAGGCAAAGTAATAAGCATAGACAGCATATAATTCACGCATTCCATTCAAA
TAAACGTTTCATCTATATCAACATATAGACCATCATCCATGAGGACATATATTCCCAAAG
CACAGCTTATCATGTGCTCTGAATCTGATGGATGAACACTTGTCAACACAGCCTGTTGTG
CTGGGAAAACTGTACCTTAACCTAATTCAATACAAGAAATGTTGTTTGACACGGTTATTT
TCTACAGGGAAAATATCCCAAGCCTCTATCTACTTAAAACCTAGTTTCCAGTTCCATCAT
GTATACTGATTCATTGCAAATCAGATGTGCTTTTCTTCAGAAAAATAGCAGGAGAGCTGC
TAATTTTTCATTGACAATAGAAGAGTTTACAAGGTCTTAGGGCACAAAAAGGCGCATCTC
GAACACCGCACGGCACTGCAGCTCAATGGAGACAGAGGCCTAACTCTCTCGATGTTATGT
GACGAGCACGTGGCATCACCCGACATTTTGCCTTATCCTTTCAACTTGTCAAGGAACCGG
CCCTGGCCATCTCCTTTCAACTTGTCCGATGATGTTATGTAATCTGTCGCCCGGCTTCTC
AGCCAACAACGTTTAACACTGGTGGATGCAAATAAAACCAAGCCTGGACTATGACCCGAA
ATTCGTATGCCTGTGACAGATTACTGCAAGGGCTAGAAGATGGTACTAGCAAATCTGTTG
TCCCCATCAAACCCAACCCGATATATACTGAGCGTGCAGGAGCAATTGGCTGACCGAGCG
GATGCGTGGCGGCGGTGGCGACGGCGACGGCGGCGCCGCTGGTGCCGAACTGGTACAAGG
CGTAAGGCGCCGCCCCCCGGGGCGGCGTGCGTGCGTCTCCGGACATCGGCGACGCCATTC
CTCTCCGCGCCGGATCCCCCTGGCCAAGCCGCGCGAGACGGAGAAACGAGGGAGACGAGG
CGATCAAGCAGGCGGGGGCAAGATTTGAGCTCGGGGCGGAGGGAATTGGGAATTTGTTCT
TGTTGCAATTCCTGCTCCGGTTCACGTGGGGGGGGAGTCGAAGAAGGACGAACTATCGCC
TGAATCACCACAGAAGCACAGAGCGACAATTAGTTTGTGCAATTGGTCTGTGGTAAAGAT
GTACTAGAAAGATTCCTCTCTGTCAGCATCAACAAAGGGCATTTGGTCTAGTGGTATGAT
TCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCCCCAATTTTTTCGTT
TCTTTTGATTTGTATTTTCCTTTTTTATATTTCTTCTATTCGGAAATACTTGTTGAAGAA
TGCATGTCAAACGAAGTTACATTTTTTTTTTCTTTCCTATGTTCGGAAATACTTGTTCAA
AAATTGCATGTCAAACGAAGAAACATTTTTTCTTTTTCTTTTGTGTTTTCTTTTTATATA
CTTCCTCCGTTCAAAAATACTTGTCAGAGGGTTGAGGGAGTATGTAGTATACCTTCTTTT
TTTCTTTATTTTTAACTATATTTTTGTTTAATATTGCACCAGCCCAACATCTCCTCTAAT
TGTTCTTTCTTATTGATGGGACTCATTTATGTTCTTTGATTTGGTATTTTCAGTTTTGAT
ATGCATTAGCTTCTTCCTCTTCATCTGAAGATTTTGGGATGTTCCTCCTCATGTTCTTAG
GTCAGTTAGCTCTTTCATGTTCCTCCTCGTTCTATGAAAGATTTGGGATGCTAGGAACAA
GAAAGTCTTCCAAAACCTAGAGATCGATGCTAGTACTACTATTAGAGTTACTAGCAAAAG
GCCCGTGCGTGCGTTGCAACGGAAGAAAAAAATATCACACGCTTTTAATTTTTATAATCA
TTTTGATTTATTAAAATAATAAGCTAACTAACTAAT