morexGenes - Barley RNA-seq Database

Contig contig_1562436
Source Contig contig_1562436
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562436 (8718 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1562436

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12052	3	2653 bp	MLOC_12052.2	Available	Available	LOC_Os09g32930.1, FRAME:-3, EVALUE:0.0, 13109.m03296 protein retrotransposon protein, putative, SINE subclass, expressed
CDS Structure of MLOC_12052

Contig Sequence (8718 bp)

>contig_1562436 8718 assembly3_WGSMorex_rbca.fasta
CTGGACCCTCTCCACCACGGCGTCGTCGCCGTACACTCCGGCCCGCGAGGTCGCCGTCGA
CGAGGACGGCTTCGAGATCTACGATCCGGCCGCTTTCGAGGGCTCGGTGACCCGCGAGAA
CTTCGTCCCCGAGGAGGTCCTCGCCACGGTGACCGACGCAATCGCGGCGCGCTCCGCGGA
GGAGGTCGAACACGACGCCAAGCGCCGCCGTCGTGAGGTCGACATCGATCAGCTCTTGCT
CGACAAGGGCCTCGAGCAGGACCGCCTCCACCGCGAGCAGGAGGCCGCCAAAGGCGCGCG
AGAAAGGGAAATCTGTCGTCATCTACGTCGACGACGACTCCGACGAGGAGTGAATGCACT
CTGGCGACGGCACGGCCGCACCCTGCGAGCTCCGGTGACCTAAGTTTGGTTTGTTTAGGG
TTAGGACCACGTCTTCGAACGCATTTTGAATTAATCTCCCGCGTAGTTTGAATAATTAAA
TTTACAGTTCTGTTTGACGTGTCTGTTCTACGCAACACGTTTTTGAAACTACAACCCAGT
TTACACTGAAGTGCAAACTGGGTCTGTTAGAGATGCTCTTATACACGCATAAAAGAGAGC
AACTTCGTTATCAAGCTGACGATGTGTAGCAAGACTGCAAGACGCAGCCTTAGCCGTGTG
ATTCATCGGAAGAACCGTCTTTTTTGCGCAAGAACGCCGAGCAGATCGACAGCCTGGTAA
AGCAGAGCCCCAAATGCAAAACCAAGATTGATCTACGACGTGCTAGTACTTCGGACCAAA
TTTAATCGGCCGGACGCCTTGCACTTGCACTTGCACAGCGACCTCCAGGAGACGTGGCCG
CCGCGCCAGTAACTCAAACCGACAACGAATGAACTGCTACAGTGACCCAGCACGGCCGTA
ACGCTAGATGGCTTAGGGCATGAACTATGGTGGCATCACCTGGGTATGCCTCACCTCTTC
TACGTAGATAAATTTAAACAAAGCCATGGTGTGTTCCATAATCATCCAACGGAGGCTATT
TTTTTATGTCATTATCTTACACCATTATATCACGAAGCTCACACTGCGTCGCCCGAGTGA
CTGCCTCGTAGCTTTTGTCAGGGAGGAGCCGAATTCTTCTGCAGGAGTCTGTTTCCGTCT
TCAGGCAGCACATTCGACGGAGGTGGCGTCTGACAAGATGATGTGGCACCTGGAGCACCC
GTTCAGCGTGGCCCGTTGGTCATGCCCTTAGCAGCACAGGTGTACTGATTCAGCACGGCC
CTGGGTAAGGCTGTCTACAGGCCATCAATGCCGCACCGCCCAGGCCCCAGGCGGAAATAC
TTCCGTCATACGGCAAGCAAGTGCTCGCCGGCGTACAGACCACAGAACAGTAGCTACAGC
AACAGCACCAAAGACAGCAGAAAATGACTTGCTCCGATTCAGTACAAAAGTTCAAATAGA
TGCAGAAAAACCATGCCGTGAAGCATTTTTAACTAATGACGAATACATATATAAATGATG
CTACGTTCCAGCATTCAGGCAAAAATGGTCTCAGTACAGTCTCCCGTGAAACAAACATCA
CGAACAACACGTCTCAGGGGGCACACATCTCTCTCGTTTACGTCTTGCTACCAAGGATAG
AGCTAGGGACAAGGATCTACATCTGCCGGGGGGTGCTCCGTCGTCGCTATCTTCACAAGT
TTCAAGCACCTGAACCAACGAACTGAAGTACTGAACTAGGGGTGGATATCTGCTTCTTCG
CCTGACCTACGATGTTAGTTGCGCTGAGGCTCCTTGAGGTTCCGTGCCGCCTCACTGAAC
CACGGACTTCTGCCGCTTGACCTGCTGGAGGATCGGCTCCTTCACCTGCAACAGTTCACG
GGTGGTAAAGCTTATGGTTCACACAGTACCAAACTGTTAACTGATGCAACTGACAGGGTG
ATGAACATCACACATGCGTGAGATTTGTGGATTTGATCAGTTTGGTTAAGTGAAGGAAGG
TGGAACTTTTTTCTTACCATGCTGGTCTTCCTGGTCCGCTTGTCCGGCGTGCACATCGAC
TCGTTGCCAGCCAGAGACTTCCTGGTCCTTTGCCCGAGCACCCCACTCTCCAGGGACGTA
GCCGGCTGCACGGAATGCATCACAGTTTATCACGTTTCAGCTATACATATGCTGTGGTTG
CTCTTGCTCAGGGTCTCAACACTGCAAAATTCTTGACTACTTGGGGGGTTCCAATCAGGC
TTCGGTCATACCTCGCGATTGCTGGTGGGAGTCCTGCTTGGGTCTTTGTTATTCTGCTGC
TGCTGCTGCTCCGGTAGCTCCCGTGTGCGGGTAAGATCAGATCCAACTGACTGGAAGCGG
CCGTTTGTCGAGCCATCTTTCATTTCCTGATCTGTGGAACGAGGTAAATGCTAGGGTTTA
GCAACTGCTGCCAAACCCAATGTGACAAGAGGTAAGAGCCTGAACATGAAAATGTGGATC
ACTGTTTCCACTCACCAGTCATTTCGTGATCTCTGCGGTCACACTCAGCAGGCCTTGCGT
TGGTATCAATTGCCTGCATGATGTAACATAGATTGAGATGGATCGGGTATGCCCAAATGA
GTTGCAGAATTACTACAGAAGTAGTGCACAAAACTTGGAACCGATAGTCATACCATATCT
TCAGTGATATCAACTTCCAGTATCTTCTTTATCTCAAGGAGCTTTCTGTTGGTGACTTCA
GAGTGAATGACAGCTTTGCCTGTGAGACACAGGTTGACATGTATTTTGTGAAGAGAACAA
ATGTAGTAAACTGCATAACATGGAAGATGTGTACTTACATGATCAACTGATCGAATCTAG
AAGATATGTGTTTGTTTTATTACAGTATAATGGGAACAGAAAAATGACAGGATCGCTTAT
TAGCCTAACAATGATTAGTTTGCAGCAAACACAAAAACTTATGAAGCTTTCCAGCTGACA
CATTTTATCCAAGAAAGATCAGCCTGCAAGTATTACTGGTAAACAACATTTTTCATTAAG
AAAATGGTCTTCCTTCAGGGGTGCTATGCAACAGTTTTCTCAAAAATGCAATTGATCAAC
ATGCAAAAAGTAATCATTTGAGTCCCAGCAGCAAATCTTTATAGGAAATGAAAATGAGAT
TACTGCCTGGCTTATTCTTCTTCACTGGCTGGCCAACTTTACTAAAAGAACAAATAACAC
GTGAACCATCCAGAAGGACAGAGGATACAGTCCAGGCATCTTAGATTTCATACAGATTTT
CGAAAAGGTTGACTTCATACATATAAATTTAAGTAGGTACCTAATCTTCTGTTGGCTGAA
TTCTTAATGTATCCATCTTGCACCATTTTGTCAATCAACTTTCGGACTGTGCTCTGGTTG
GCTTCGCCATCAAGCTTGCCCTGAAGCTTAGCTACAGTCACATAATCCATTGGAAGTGCG
TGGTATAATGCCTGTAATGACAATATTATGTTAGGGGAAATTCCCATGCATTGACTTTGT
TAACAGAATAACCATCAAGGGTTTAAGGACGGTACCTTCATGTACATCAGATCTCCATCA
TTGTTTTTGGTTCCTTCAGTAGGTGAAACATTGTGCGTGGCAACCTCTTTCTTTATGTAG
GGTGTCTTGGGATCAGTAACCTGTAGTCAGGAAATAATCATGTTAGTGAAGAACAATATA
GCATGTGGTAGACAATACTGTTACTTAGGTTGACCTTGTTAACAGCATAACCATCCTTGC
CTGCCCTGGAAAGTAAACCATCTTTAAGTAGCCTCTCCAAAATATCTGAAAAGTGAGTCA
TTACTTTAGCAATTCAAGACTTGAATGAGAATGCAGAAAGAATGCCTCTGTTTTACGAGA
TTAATCTGACAAGCACAGAGAATTGTTTCTGCATTACCTTCCACCATTTCCTGCAAAGCA
TTCAACAGGCATTTATTAGTAGCAAGCCGGAAAACTTGTAAAGTGTATCGAGGCATGGTC
TGTTTACATACACTGGTGGACTAACACTGTAAAGATATCTGTCACTTGCTCACATATCTA
GTGACTGAAGTAGAACAATAATCAACCGAAATATCAATACTTGTCATAAAAGGGAAGATG
ACAGCAAGAATTACCAATGATATGTCAGGGTAGTTGGAAAGGACATCTGAAGCATTAACA
GTACCCATGTCTCCTGAGCATATCCATGCTCTTACTTGAGCTGTTAGCTCTTCCTCATGA
GCAGCATCTTGAGTTTCATCTGTGAACATATGAAGTTAGAGAAGAGCAAACACATACACA
TAGATCATGTCTGCATGTAAAGATTGCATATATGTATGAGCAAACAAAGCTCTCTTGAAC
CAATAACTGACCTTCTGAGTTTGTACCACTTTGACCTCTGCCATTTCCATCTGTTGCAGC
AAGTATATTAGCACCAAAAACATTAAATACAATGAGAGCATCATGGAATAAATGTTACCA
TTAGGAGCAACGACGTAACGATCCACTTCAGATGGGCGAACCTAATAGAATCAGGATGTA
TAAGCATGGACATTTTCATGCAAGAAGGAGGTACCACATGTTCATAACTGAAAAAAGAGC
AAATTACAGATAATGTTACTAAAATTATCAGTTATATGATTCTTTTGGCCTTTACCTCAG
TGTCCGTAAAGTCATCATCATGGTCAGATTCACGACCCAAGCTCATCTTGTCATCGTCAC
TGTTAGCATCATTAGCATCACATGGATCAAGGACACTCTTAACCTGCATAAACAAAGCAA
ATATGAGAAATTGATCCAAAAAACCCAAAAAGAATTCTGGACAGACGCTGTAATTTCTAC
TACCTTCAAAGCTAATACAAGATGCTTGCTATTGACGTTCCCCACTTCCATCTTCAAGGG
GTTCTTGTTCCATATATTTACGGCCTCGTTCTCAGCACAACCCTTGAAAAAGGGAGGCTC
GTAATCCTCAGGCTGGCAACATAATAAAATCTGTAAGCTTCCACCAACAAAGTTATACAG
AAGAAGAAAAGCTAAATCCTTATTTCTACAGAACAAAAGAATCAGGTTATCTACGATGGC
AGCTGCAGGTTTCAGTAACTAGAAACAAAGGCACTCACTGTGGTCTCATCATAGTATAGC
AGCTTCATTAGAATGGTTCGCTGAACACAAGCAAGCGACAGAATCAGCACAGCACAATCC
AATGTACCCAAAATACAGAAAGTCAAGATTACCTCCTCTGGCATTTGGTCCAAGGTCCTC
ATAAGTGAAACCAGCGTTCTGATCATCTTACAAGCAGAGCTCCTAAAAGGAAACCGTTGT
CACGTCAGGATATTACCATTTTACCACTGGTTACAGCTGACAATATTGATGTTGACAATA
ACATGCACATATGAACCCAATGAATAGTACTCCCTCCGTTCCTAANNNNNNGTCTTTTAA
GAGATTTCAATAAAGGTCTACATACGGAGCAAAATGAGTGAATCTATAGTCTAAAGTATG
TCTATATACATCCGTATGTAGTTCATTAGTGAAACCTTTACAAAGACTTATATTAAGGAA
CGGAGGGAGTAGTTCACAAACTGATCTGCAGGATGTATATAACAAAACCACACTGAAACC
TCAACTATCTCATACCTTCAGTACAAGAATTCTGCAAGTCAGGCAGAAAAACTAAGAGCA
ACTTATAAATTCAACTAGTACTAATTGTCAAGAGGTGAATAATAGCTCCTCATAACTTTA
GTTTTCACACACTATCATAGAGAAAAACAGAACACTGAACTCCTATGCCTTCACTTTATG
AGGCCACATCTTTGAAATTATACCAGTGTGTATGCAGTATTACTGTACTATGACGACTAC
AGTATACACATAAAAACACCCTTCACAAATTAACTCTTAGGAGAACAAAAGACTAACAAC
AAAAACAAATTTTAGCATCCAAAAAGGGATATGCAAGATAGCACCTCATCTGATCAGGAG
TGACTTCTGCTGAATTTGACTTGAATGTGGTACTATTCTTTTTGCTCCCTGTGCGACTCA
TGTTCATTGCAACTTCCTCCCCGTTTGTGTTGGGGTAGCTAAATGAGACTGCAGGATAAT
TATGACACATGATAAGCAAATGTAGGGCATATGATCCATCATCAATGTCAGTCCAACTTA
ATACGCTACACGTTAGCAAACTCCACCCGGTGATACTCACAAGCATACTCTTCAATCATT
GGCCCTTCCTCCTTCTCACATATACAGAAGAGAAGGGTCTTGAGATATTTCTTTTGTAAG
GCATCATAGACACCTAGAATCAGAAAGTTAATCAGACAAACGCATAAGAAAATCACATCT
GAAACATATAATCATAAAACAGCAAACTGATTGAATGAGCTCAAGTTGTCTAAGACATAT
ATTACCTTTCTCCATCCAATCAATCAACCTCCTGGATTCAGGATCCATGGGCATCAGCTT
CTTAATCTTCATCTCTGCAACAAATATAAGGTCGTTTGAGACTTTGAGCTAATAATTTCA
TGCAGAATGTAGATATTACATATATATACTAGGCACCAATCCTGACCTAGTGCCGGAACA
GACTTATCATTGAAGTACTTCTCAGGAAATAGACCTCTGATGTAGCTGATGTTGTATATA
GCAATCCGGAGCAAATTCCTTGTCTGTTTGGTCAACAGATTACCAATGTTATCCAAATAG
CTCTATGAATAACTTCAAATTACGCACTATGCTATGATTTTCACCAGATCGTATACATAT
CTATTGAAATAGCCCAGTACTTCAGCAATAGAAAACCTACCAACATCATATCAAATTGGG
TTACTGAAAAACAAGCTCAGAGTTAAGCACAGAATTCACAAAAAAATACATTTATATTTT
TCAATAATGTTTTATTCAAACACATACATATGCAATAAAGAGTGTGTGATAGATTTCTTC
GATTAAACACCAGGAACAGTTTGCCCATGCAAATACAGGAACACATATTGGTATGATAAG
CAAATCTGTTAAGTGAACAGAGATCAATACATTGCAATTCAGGGAAAACAGGTATAAGAA
AAATGTAAACAAGACATATCATGTCATATAGGAAATTAACCACCCAGCTTGTCAAAACCT
GATGATAAACCAATAATCCTGCAACGTACTTGTCAACCACTCCCAATTAATATTTGATGA
GGACACTACAGTTTAAGAGTTGGTTCCCAAACATGGCAAGAGAGGTTTGCTAACCTCGGA
TAATTCCTAAAGGCAGAACATACATTCAAAAACTCACAAGCATAGCACAAGAAACAATAC
TTATATCTGTCACAAAAGTACGCCACACTTCGATCGAATAGTAAAACTCCAAACATAGAG
ATGCTCACTACCCCACTGGAAGCATGTGTACAGCAGAAAATCTTACTCCTAGAACAACAG
GAACTAGTACAGCCCAATTCAAACTAAGATGACAGAAGTTCATGCTGCTTTTCCAAGTGA
ATTTGGAAATGTGAAAGGGACGTGAAGTTACGAATCGAACTTAGGCTGCTACCAAACTTC
AGCAATTAAACAGAAAACGAGACTAAACTAATTCCAGAGGTACAGGAAGAGTTCGAGCAC
TGGACTTCATACAAGCTTCTACCACAACGCACCAGAATCGATGTACTAGGAAATTGCCAG
AGAAAACTAAAGGATCGTGGAGTAAACTAGTAAACCAACCAATATGATCTACGTCGAACG
TGTGAACCCACATTTCCAGCAGATATAATGCTAACTATATATGTAAGCGCAATTACCACA
AGCATACTTCCACGACCTAACCTAATCGAGACGGGGAAAATCCAAAGCGACCAAACGAAA
TTAGTTCAACAGCTCCCCCAACGTTCAGAATACTACTAGTTCAGAATCGCAGCGCAAATA
AGGGGGGTGGTTTCCGCGCTAATCTCCCGCGAAATCGAGGAAAACGACGAGGCAAGCCTC
CCGAAAAGCAGATTACACGCTTCAATTCCGCAAAATGAAACCGAGCAAGCAAGCAGGATG
AATGAACAACCATCAAATCAGTGGGGTAACAGCGAGAGGGCCCGTTTGAGCAGACGGGAC
GCACCCGACAGTTCGCGGAGGAAACTAGGAACAAAATCCATTTGAGCGATAGCCGAAACG
GAATCTACTGACACTTCTAGCCGCCTCTCCATCAGCAACATTGGAGCAGAAACCCCCACA
AAACCCCATGGCGCCCAAAACCGCGCGCGAAATCGATGAAAACCCCCCCAAGCAGCACCA
AAATCCACCCCAAAAAAACCCCGACCAGAACGAAACGATTCCGACGCCCCGGGAGTACGA
ATCGGCCCAAATCGAACCCGCAAAGCTCGCGCGCTACGGCCAACCGAGCGACCAAATCCG
AGGGCAAGCGCTTCTCGGGGAACCGCAGGAGGAAATCTCGACCGACCGACACGAAACCAC
CGACGGAAGCAACTCGAATCGCGCGGAACCGAAGCGAGGGACGGGGGTGAGAGGGGAGGG
GGGAGGTGGGTGGGTGACTTACTAGAAGCAGCGAGTCCTGCTCCGTGATCTCCGCCTCCT
TGGTCTTCTGAGCCATCACCTGCATCCACCGGAGAAGAGCGACGGGGCGCCGGTTAGCAC
GCGGGAAGCGCAGGCGGCGGTGCGGCCACGAGATGGGGGCGGCGGCGCGGGAGAACTCAC
CATTTTGCCGCCCTGGTGGTGGGCGTGTGCTGTTACGGAGGGGGGGGGGGAGGGATCGGA
TAACTTCGTATCATGTAT