morexGenes - Barley RNA-seq Database

Contig contig_1562345

Source Contig contig_1562345

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1562345 (1855 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1562345

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12019	1	601 bp	None	Available	Available	None
MLOC_12018	2	378 bp	MLOC_12018.2	Available	Available	LOC_Os06g41840.1, FRAME:-1, EVALUE:3e-20, 13106.m04369 protein reductase, putative, expressed

CDS Structure of MLOC_12019

CDS Structure of MLOC_12018

Contig Sequence (1855 bp)

>contig_1562345 1855 assembly3_WGSMorex_rbca.fasta
GTAGTCCAGCACGTCGGCCTTGAACAGCCGCAGCCGCTCCCCGGCGCCGTCCAGCGCCTT
CAGGTGGCCGGTCTTGCGATCACCTGCGTACACGAACGCACTTGCACTTGCACCTGCACC
GTCTGGTCGATCCTTTGCATGCACGGGACGGCTCAAAGGTGGCGTGGCCGTGGATCTTAT
CTTACCGAGGTCGCGGACGGTGCCATGCACCGTGTAGTCGCCCGTGGAAAGGAGCCGCTT
GACGAGCCAGGAGGCGACGAACCCGCCGGCGCCGGTCACGCACACCGTCTTCTTCTTGCT
CCCCTCGCCATCCATGGTTACCTTTTCTTTTCTCCTCGTGTTCTTTCCGCCTTGCGCCCT
CATCACCGGCCGGCTCCTCAGTGTATCTATAAATGCGTGAGTATCCGACCTCTGGCGGCT
GCGACCACTTTTTCTTTTTCTGAAGGAATGCGGGCCGCGCGTGGCAGCTGCTTGGTCTGA
AACCAGGACAAGTGTAGCGCGGGGGTACCAACTCAGGCAACAGAGGCAGACAAGACTTGC
CGCTCGTGCAGCCACGGCACGCAGGGCCTGGAGACACACGTCTCTGCTGGATCTCCAAAC
TAAATGGGGTTTGTCTAGCGTAATCTCCAGCCGATGCTGGCACAAGAAGGGCCCCATCCG
TGTTGAAATTGAAACTGATGCTATGAGCATGATTACAGTATTTCAGGCTACAGAGAAATG
AGCAAGGCATGCTCCAACCACAGCCAGAATGATGTACTCTCTCCGTTCCAAAAATAAGTG
ACTTAAAAATGACTCAGTTTTGTATTAAGTTTAATACTCCTTTCATTCCCTTATACAAGA
CCACTATAGAAAATACATTTTACATCTATATAAGGCCACCAACAATAATCAAGGTAACAT
TAATGATGTTTTCTCGTACTAGCAACTTGTTTAATAACTGCATGCATGTATTCATAATGA
CACTTGACTACTTTCTTCTCACTCATTCGTTGCATGCATGCTGCATAGAAAACTTGACTT
TTCAACCGGTCATTAAATTTTGCCTTGTTACGTGTAATATGAGTTTGTAGGGAATGGAAG
GAGTACAAATTTGAGTCACTTATTTTTGGGACGGAGTAATTATTTATTGTTGGCTGAGAC
CAAATTCTCTTGTCAGTCGTCTGGAGCACAGAGCAAACTTATTCTGAATAAATTGGCTCG
CAGCTGAACATACACAAAAGGGTTACAATAGTGCTTGTATGATTGTATAATCATAATCAA
CAATTTAAACGAGTTATCCAATGTCCACTCAACATAGGATGTTCCGAGGAAGGAAATAAA
AAAGGGGACAAAGGGACATGCTCTGAAGCTGAACTAGTCAACGAAGATCCGAAGAAAAGC
TCCCAAATGCGCCAAGCCTTCTTTCATGACATTTATGGGACAACAGATGTTCTGCTAGTT
AACCACACGTGAAATGTTACGACTGAAACAGCTCTGACTGGATCACGCAGCCTGGGGCTT
CTCCTCGGCTTTCTTTGGCTGCCAAGAGAAACAGATGGCGAGATTATCGTTAAAAGTTCA
CAAAGAGGAACAAAGAATCATGCCAAAGTACTGAATAGTAGCAAGTTATCATTGAGACTA
TAAACAAAACTAGAAATAACACCCGCGCTTTGAAACCCGCAAACTCTGAGGAGCAACATG
TCCAGGAACTACTTAAGGGACTGTTCAGATGCTCTAGGCGGAGCGGAGCGCGTGGAGCAG
GCTTTTAGCAGCTCCGTGATTTAGGGCCTGTTTGGGACTGCTTCACTCCATCAAAATCAG
CTCCGCTTCATCAAATCCACTTTAGAGCAGTTTCATATAGAAGTTGCAACCATTT