Map Locations of contig_1562323 (9954 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1562323

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12009 1 2646 bp MLOC_12009.1 Available Available LOC_Os01g08020.1, FRAME:-3, EVALUE:0.0, 13101.m00831 protein boron transporter protein, putative, expressed





CDS Structure of MLOC_12009






Contig Sequence (9954 bp)

>contig_1562323 9954 assembly3_WGSMorex_rbca.fasta
AGGTAGCCGACGGTTTCACAAAGGCCGTGGCTACGAGACCATTTGAGGAATTCAAGCGTA
ATCTAAACTTGAGAAGCTTAGATTAAGAGAGGGTGTTAGACATGAGATATTATAGGGATA
TTGTATAGTTGTAACTCCCTTTGTATTTAACTTTCTATCTCTATCTCTCTCTCATGTATA
TCTCTAGTTGGTTGTGACCCAACCGGCTACACCTCTATATAAAGCTTCTCCTCTCCTATT
GGAGAGACATGCCGCAACATATCTTTCTATAGTTGTTTACTGTCCAATATATTATTATTA
TATTATAGTATACATGCCTTATAATTGATGGTACTACATATTGTACGAGGTTGAACTCGT
GTCCCTGCTATAGCAAGGTCATGATCTTGTGGAGTCTATGGTACAATATTAAAGTATATC
TTTTGCAAATCCCATATCGTATCTGTGTGCGGACAAGGGATCAGTCGGCAGACACGTATG
TGGGAAGCAATCGTCGTCTAAAGCTATCCACTATATATCCAGTAGTAAAAGGTAGTTTGA
AATTTAAATAAGTCCAATCCATAACACATGTCGGGGTCGCACCATCTAAATTATGGCCCG
GACAGCTCTGTGGATCGATGGGGTCGACATTAAATGGCTCACTTGATCCAGACAGTTGTG
TCTAGATGGATACGTATGGTTTAATGGTCGACGTTAGATATGCTCTTACTACCACCCGCA
CACAAAATAAAAAACATAGAGTAACACTCTCCATTAAACATGGAGGTGTTATTGCATTAT
CGACTTATTTCGTACGGCGGCTAAGGCTAGTTTCATCTATCAAGCTTCACCGGCGAACCC
GTGGATGCTTCGGTGCATGCCACTCCGGTAGTTGGTGGCGGGGAGAGAAATCCCGGTGCC
GTTGCTTATCAAGCAATACTTTTAACATGGTACACTCAAACAGAGCAAAGCCAGGCACAC
AAGCAACAACAGATCACAGAGGGACAGTTTTCCTCCAATACCAAATCAGCTAATCTTTCT
ACTCCTCACCGTTGCTATTCCGGCAATACTTCCTTCAGTCTGCTGCTCTCACTGCTACCT
GTCTTATGGAAAGTGCTATACTACCAGTACCGTGCATATTATCACGGAAAGATAATAGTG
CAGTCGGCAAAGAACGACTGCCTGAGGATTTCCCTCCTCATTTCCGATAGAATCATTGAT
GAAATCCTCGGTCGGTCCTGGGCCATTGTTCTATCTTCACACGCTTGGCTGAACGGCATT
TGAATGGACCTGAAGGTGTCTTTCTTCACGATGGCTCACAACCCTGTGCTTCAGCTCCCC
ACGGTGTGTTGTGAGTTCATCCAATATCTCAGCGTCAATCCTGCCGTCGCAACTTCCTGA
AATGGAGCCATCTTCCTCCTGCTCGAGGAACCAAAAAGTTTCAGATTAATAAGGGATTAC
CGACACCTTGGGGCATTGCAGAGAATGAAACAAAAGCAAAACAAAAAAATTTATAGGAGA
AGACAAGCTGAAGTTATATATACCAATGTGTGTTCATGTTGGACCCCTTCAAGTTCATCG
TACTCAGCCGCGTCCAGTTCCCGCAAGTCATTGGGCTCAAAAAACTTGGGGAGCAGGTAC
TGCCTGATGAGAATCATGAGGAAGAAAGGCAGCGGGAAAAGGATCCCGGCAATCGGTATC
CATGTTGTGCCGAAGCATATCAAGAAGTACACAATCTGAAAGATTGTAAAAACATATATC
GTTCTCGAAGACACCGACTCCACGAAAGATGCATGGGGACCTTCCAAAACCCTGCAATGT
TTACAATAGCCGATTAGTGCAATCTGTTATATAATCGGCGAATCTTCAATAAATCAAATG
GGATGAACAGAAGCAGAAATAGACATTACTTGTAGCGTCGGCTTGCTCCAACGAATAAAA
GTTGTATCCTTTCCCAAAACTGGTTCCCGGGTAGGCTATCAATGGCCATGTAGGCAAAGT
AACCCCAGAGGACCGAAGTCGGTATCATCTTGATAACCGGCATAGCTCCAACACAGCCAC
CAACCAGCAAGGATTGTAGCAGGTTGCTTAGTCTCTGTTCGTTGACACGAACAGGCAAAT
GTGCTTCAATATGTTTTCTTGGATCAAATTCTCCAGCCAATTTTCCATCCTCGTCGCCTT
CACGCAGCACAGCATCCTTCAAGCTCTTCAAGTCCTTGTCAACAGAATCAGCCTGCGTGC
CAGTTTTTTTTTTAGCGATATGAAGATTACTTTCTAATATTCTTATAAAAATAATAGAAA
TGTTAATGCACAAACTTTATGGAATGGAACTAATACATGAAAATATGACACATATCATGC
TATCCAAAAAGAAGGATGCAGAAGCAACTACATGACTTTACCTTAAAGTGATTTTGGCAA
CTCGTGCAATAGCATTTGCTAACAAAATACTTCACGTGTTGTGCATGGATGAAGGGAAAA
TTAGGCAGTAAGATGACAAAGATAGAGAAACTCACATCCTGTTTATTATCCATTTCGATG
AACACTTCATGCATCTTTCCATAGATTTCCAAACTGCTTGCACGGTTCGACATGCCTTCT
TTGGCAGTTCGAAGCATCCTTTTGCGCATTAGCTAAATTGACAGAAAAAGAGAAAAGGGT
TGAGCAATTCTGACTACGGTAGCATGTGACGCAAATCAGTCTGAATTTCACTAACCTGCC
CCTTGAGGACAGCAAGGCTTCTTGTATGCATGGGGGACTGAGGAAGTACTCCATTTGCTG
GAGGAATGCCAATTAAACCACACAGTAGGACCTGCACCATTCACATACTATGAGAAAAGG
AAACATCACATGGTAAATTAAAATTTGGAGTTAAAATGCAGTCTGGTAAGAGTAATTTTT
CTACCATGCACAGGTAAAATGTATTGTGCAGGCCTCTTATGGCCACTCTTCACTAATCCC
CATTCTTATGTACCACGCGAGACGCGAGGAATAAAAATTGGTTATCCTAATTTTCATTGG
CATACAAGGTTGGTTATTATAGGTTCTTAAGGAAACCGTAAAAAGGCTCACAGAAAAAGA
ATCTGTACATGAAATGAAGTAAAAACCACGTACCATGAATCCAAGTACCAAAATGTCGTA
ATGGTAGGCGGAAGGTTTCTTCAGATTGAACTCCTGTTGCTGAGCCAACTGTGAAGCTAC
ACTATGATCAAAGAAGTACAGTCCCGCAACCATCAAAGCAGGCACGATGGCTGCAAATAT
ATATGCCGGAGGGACAGAAAACAAATCCTGAGAGTAAAACCCAGAAAAACAAAACATTCA
GAACCCTGGCATGTAATATAAGCTTTACTAAATTTGGACTAACAAGACAATGAATAGTAT
CTACACATCTAGAACTACAAGTAATTTGAATTGATACCTTTGCTACGGTCCAATGACCCA
ATGAACTTGACTCCCAAGGAAGTGGACTGAAGAGTCTCCTAGGCACTCCTGAAGGGACCC
CGCTCGGTAGCGCGTACGAAAATGCCGTCCACACGATCACCATAAGCGGGACACCATAAT
CGGCAATGAAGCTCCTAAGCCATCCTGCAAATGGCAAGTCAAATATAGTGGCACAGTAAT
CGACCGACTAAATACACACAACAAGATAAATGAAGTAAACGTGTGACCAACCTATACCAT
ACAGCCATGACCTTGCCCGCCTAGTCTTGAGTGCACTGTATAGCAGGCCAATTGAGAAGA
TAACCCCAAGTAGGCCATTGACATATATCCATTGGAACTGGTATATCGGCGAACTGCGGT
CAAATATCTCAGCATCTTTCGGCATACTGAACTCGCCCACGATTCCCTGCAATATATGGA
TAGTGCCCGTATTAAGTATCCTCCGCACAGTGAAAATAGCTAGGGTTAATTTGCTAGACA
TGATAGCACACCTTGATAGCTTCTTGCAGGAAGAGAACGGTGATCAACATCCCAAAAAGT
TCTCCTGCAACCCTCGTGAATCTGCTTATAACATTGGAAGCATTGAACATTGCCAAGAGA
AACAACATGATAGCAGTCCAAATGCAGACCCTGCACGTCAAGAGAGAGCATGCATTTAAT
TACGTTTGCAATAACAAAGCTATCCGCATCATGTGGTGGAATCTATTTTAGTACCTAAAC
TATACTACGTACCATCCAGCCCAAGCCAAGTATAGCCGTTCTCCCAGACCTGGCTGCTTC
TTGGCGAAGCTGTAGAGATACGTATACATTATAATAGTAGGTTCCGCGACTCCAACGATC
ATCATCGGCTGCCCTCCAAGAATCGCATGTATTATCCCGCATATTGCAGTAGATGCCAAA
GTTTCAACTGTGCTGAGAATACCATCTGAAATAGATCACATCTTAGTTTTAGAGATTGAG
CGAAAATTTAAATTTCCCATGTGTAGTAGAGTGTGGTAATTAAGAGGGGAGCATTTACAT
GTTGGGTAGTTTTACAATGGTCCTTCTTATCCCTAGAGTGGTAAGAGTTGTAGTGAATCC
TGGCCTTTGATTGTTGATGTTTCTTTTATCGTGCAAAAGATTAAATTGGATCCTCCGATT
AGTGCATTGTGGCATAAAAGGGAACTACTACTGCACATTATCGTTTTTCGTAAACAAACT
AGACACTTTGTTCACAAAATCAGGGGGATTAAGTTAATTAATATTATTTTTGCAAAAGGG
GGATTCAGTTAATGAACTTCACACATTCTTTGGAGATTAAACATTATAAGAATCATGTAC
TTCCCGCAGTACAAAGAGCTGACATATTCGAAAGATTCTGGCATATTTGAAAAATAAACT
AAATATGGTATATGGATGGATGATTCAAACAAATCGTGTGTGGCTTAAGAAAATCCAAAC
AAACTAAATCAAACTTAATTTTGCATGCGGAATAAGACTGTTGCCAACGGATTCTCTTTT
TTTGTGAAGAAACTGACAATTGATTGAAAACAAATGCATGATAAAAAAATATAGACGGCT
AAGACGATCATGCTAAATTTTCTCTTACTTGTTTCGTTGCTGAGCTGCTCTCCGAAGGCG
ATGACAGGGAGCGCGGAGGCAAAGAATATGTACATGGTAGGTGCCAATATCCTGGCAAAC
AAACATCGGAAGGGAAGAAACATACATAAGCAAATCCCTCAGCAAACATGCTAAAAATGA
TATGGTTGGGGTTGTTCATAGCGAGAATTCTTTATTTGACCATTTCTTAAAATCTGATTC
CTTTTTGGCCCAAAAGAGGTTTTTCTTTCCTTTTCGATCGACACTCAAACTTTATTTTGT
TCCCCACATGAAAAGTCGTTTTTACCCCTGGGTTTGTATGCTGAGAAGACAAAAGTGAAT
GTGAGAGAGCCACTTCCCTACAGTGTGGGGAGTCGGCCATGCACGGCTGCCGGGTAAGCG
TCACACGAGATGGCGGTTCAGGTCAATAGGCACACGCACGGTTTGACGGCGGTACGCGGA
GGCTCATGCCTCATGGTGCGGTGGTACCGGCCAACTCGCGCGGTAGCTACGACCAGTACG
TACGCACCCGGCAGACTCGGCGAGCTATACACAACGGCCATCTATGTGCTGCTGTGGACG
CGACGGTGGCACGTTGCCGGCAGCATAACCAACAGCAGAACACAGCCGATGTGGGTGTGG
CCTAGGCATCTACGGTGCAGCTAGCATATATGGGCATCGTGGCAGGGCAACGATCGATCA
TGTTGGGCCATAGCACGCCCAAAACAGCTGCGTGGTGCATGGCGAGCACACACTGTGTGA
TCTCCGCGTGTGTGCTCCTGAATGCATGTAGTGGAGATGTGGTATTTCATTTTATTTAGG
CATGTCTTTTAGAGTTGATTGGCTTCGGTCGATTGGTGAACGGTAATGATTTATAGTAAT
ATATGTTCTTCAGTTGTGTGCAAAATTGAAAAAATTAGTCAAATAGTCCAACAGAGGTAA
AATTATCTTTTTCGGTTCCGCTAAACACCGTTAATAGCTAAAATTGACAGAAATTTCACA
TAAGAAACAACTTTACTTTAAGGGTTGTATGGGGAAGAAAAATATTTTTAGGACTAAATA
GGAAAGCATATTTTAAGAAAGGGTGAAATAAGGAATTCTCTCTTGTTTATATACATGCAA
AATACAAGAAAACTAACCCGAAGCCAGCTCGGAGCCCTGCAAGCCAGTCGTCCTTGTACC
AAGGCGCTCTCCCTTTGACATCTGCGACCACTCCCTTGAAGGGGTTCCTCAGTAGATCCA
TGAGCTGATGAGAGAAACAACCTCAACGTACTATTATATGCACAATAGGCATCGGATCTA
GTTGCTTAGTTTTACTATGACCAGAAAAAAGTTGGTAGCATTAGTAGTACTACCTACCAA
CAGAAACGACGTAAGGGGATGGGAAAAATATCATATTTCCACATTGCAAAAAAGATTGAA
AAATGTGTACACGCAAAAAATACAATTTACAACCAGTTCAAGAAATTTTTCATAACTATA
CTTTCGTACGTGGCGTAGAACAAGAGAATGCATGCATGAAAATGGGCCTGTTTTTTGTTG
GGCCGGGATATTTTTGTCCAGCTTGCAATTCATAATATTTTGAACGAGATTTCACAGATT
CGTCGTGAATGCGTGAAGTTTTCACAGATTTCCCCCCTACTTTTTGAAACTTTAAAATAT
TGTTTTTGAAGCATTAAAAATTAAGTTCTTGGATGGGCCCGTCCACAGCAACTTGGCACT
TCGTAAGGGGCAAACTATTTCGGTCTACGCACACGACTTGAGGAAGAAAAGCTCATCTCA
TCGCCTCAACTTTGTTGTCACAAAGACGTCAACACTCCGGTTGACATAATAATATTGCGA
GCCGTAAGAAACTGGAAAGGGAATGAATCCGCTCGTGGACGTGGGGAGTCAATCACGCGA
GGCATGCGGCCGGGGGGCTGGGCCGTCATGTGCAAAACTGTGAAAACGGAGCAGGAACCG
CCGGGAAAGCTCGCCGCGTTTGTTTGTTCTCGCGAAGAATGGCGGCCATCCGGCGGCCGG
TCGGGAAGCATCTGATGACGAGCTGGGCGGGCGGCGCCGAGGAAGGAGCACCGCCGACCT
TGCCCGACCAGGGACCTACTAGCTAGCTAGCCATAGAAACCAAACCGAGCTGCGGACGGA
CGGACGGGGACGGGAGAGAGTCGTGCGTACCAGCGTACGTACCGGTGATCCGAACGGGCG
GCGGGGCAAGGAGGAGGAAGGAAGCGGTGCGGTGCGCGGCCGGGTAGGTAGCTCCTCGGC
GCGGCGGTGGAAGCAGCTGTTGTGGTGTGGTGTGGTGCCCAAAGGCGGCGGCGACGGGGC
GTGCGCGGCTACTTATAAGCGGGCGGGGCGAGACGGACGGAGGAAGGTCGATTTCGCCTT
CTCCTTTGCCGGCGGATATGACGAGTGGGAAGCACTACGGGAAGGAAGGAAGGAAGGGGG
TGGGTGCGCCCACGTGGACCGGCGGCGATGACCCCGGGATCGCGGCGGCTGCGGCGGCTC
GATGCAAATGTCTGCTCCGTGCCATGCCGTGCCGCGTGATCGGAATGCACGGATGCGGCA
CGCTCAACTAATCCACGGCCAGAGACCCAGCCGCATACAAAGCATGCCCTACGTGAATTT
TCTTGTCGGCATGCTTTGTATGCGTTTAAGGTTTTAAGTATGAGGTATACGAAGGTAGAT
GAACAAATTTGAAGTGTGATCGGTCCTAGCGTGGCGTTTGAATGTCCGGATTTGCCCTTA
GGGCATCTCTAAGAGCAAGTATAATAGAACTGAGTGGGCTGACTATAAAAAATAAAATAT
TATATTTTTGCTTAGTTGAAGGAGAGAGAAGAGAAGAGAAAAGGTAAGCGGCTCTTAGTT
AAGAGCCGACTCTAGCACGTGCTCCTAGGCACTTTGTGAGAATGAAATGTGTGTCATATA
ATAAATAAGTAGTACACTCTTCTAACCAACTATTGTACATGTTGGCTATAAGATGAGATA
TAGATGACATGGCATGAGCTTACAGCCGGCAGCCGGCTCTACTATTGTACTTGCACTAAC
ATTGACTCAAAAATCAGACACAACATCCGCTCGTGGACTAGGGGGCCAGTCCGCGGATAC
GGATGCAGCACGCTGTCATCCGAAGTTATCTAATATATCTCTGTCAGTAATGGATAATTT
GAAATTCAAATAAATCTGATCCATATGGCGCGCTGGAGCACGCTATCCAAATTGTTGCCA
TGACTGCTCTATAGACCGATGAGCCGGTGTTGAATGGCTCACGTAGTCCAGACAGTTTCG
ACTTTGAGGATCGACGTTGGAGATGCCCTTACTACAATCCCCACATAAAATAAAAATACA
TACAATATAATTATTTGTTAAACATGAAGGCGTTATTGCGGTATTGACTTATTCCGTACG
GCCGTTAAGTCTAATTTTCTCATTCAAGCTTCCCCGTCGAACCCGTGGATGTTTCGGTGC
CTTCCACTCCGGTGGTCGGTAGTGAGGAGAGGAATCCCAATGCCTTTGCTTCAGCTAGTA
GTTTAAGTTAGCTTTTTCCAGTCCCTAGATGGATTGTGGCACTTCTTCGAATTGTCTTAC
AGGCTCTGTCATCAGGTGAATTGCGACAACAAAAGTGCGTCGGCGGCTCATTTTGACGAC
GGTAGTGGTTACGCCGTAACCTAAAGAACTCGATGTAAATTTTATTACATTTGAGGTGCT
TTCTACTTTTGATGAACTTTAGAATAAATCTAAATTTTCATTGAAAAAATATAGCATTAA
CTGGTATGTGATGTTTTTTTTGTTTTGAGACGAGGTATGCGTTGTACTATGTGCTGCGTG
AAGAGCAAACTCTATGGACCACTGTATATTCTTATTAACAGAGAAAAAAACTATATGTAT
TTTTTTCATCTATTAAGAAAAGAACTACATAAATTCTGAACGGAAAATAAATAGATGAAC
GAAACCAGACAACTTCTCACGATCGAGTTCTTAATTTAAACAAGATGGAAATTACTGCAT
CATCTAAGCAATGACGCCATTTGAAAGATTCACGTGAAGAAAATGCGACCCATGCTGGCG
CGCGGCCTCCGGCGTTGCCATTCACTCATCATCAGTTGCCGGTGCTTTACGCAAAATGTC
ACTGGCCGTACCCGTGGTAGTGTAAATTGGAGCCCCAGTTCTCTCACAAAATAGTAAGAA
CATTATAGAGTTGCTACTAGTAACCACAAGACAGATAAGCTTCGGTCTACCTAGTATTCT
GGCGGCCACCGCACAAAAGTCCGCCGGATTACAGCTGCGGTCGCCCTCGATCAGATCTCT
GAAATCGTGGCTCCAAACACTCAAATGGAAACCGGCGTCGCGTCCACGCATGGTGCGGTG
GCATGCATGCTAGCCCTGAGGTATGAACGCGTCGTCGTATCTAGCGGACGGAGGGACTGA
GGGAGGCAGGAGGAGCGTCGCGACGGCGGATGAAACAAACGGATAGAATACGTAGAGGGA
CCTTGCGGTGTGTTTTCCATGGAGAAGATCTGGCCGCTGCAAAGTTGACCCGACAGAACG
AGAGTGTGTTGTGATCGTTTCGTGTAGTTTAATTAACCTGCTGGGGCATATTATATCGCA
TGTGCAGAGGTCAACTAATCTGCAGCCTGGTGGCCGGCAACTCGCGAGGATCATATGCAG
GGTGGGTGGTCTTGGTTACTTGGGTGTATTTGGTTTGAGGACCAAAAGTCATGGAATGTT
ATGGTTTCATTTCAAAGTCATGAATTGGTTTCATCCTTGTGTTCAGTTGATGATAAAAAA
TGTCATGGGTTGGTTTCGTTCCGGTGTTTAGTTGGAGAGATGTAATGAGAAGAATCTGTA
AATGGTGAGATTACATCTCTGAACAAATAGAGTTTTTTGCATTTGATAAGCCTATAATTT
AAATTTTCAGCAACATTTTCATTCTATTTTCAACACATGCAAATAAAAATATAT