Map Locations of contig_1562310 (4578 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1562310

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11993 3 2529 bp AK375658 Available Available None





CDS Structure of MLOC_11993






Contig Sequence (4578 bp)

>contig_1562310 4578 assembly3_WGSMorex_rbca.fasta
AGGTGCCGTCCGTTCGACGCTAGATAGGGACGGGTCGTGGGACGACGGCGATTTGGATCA
TGAAGACGTTCTGCTACATCAACCGCATTTCTTAGCGCTTCCCACTTAGCGATCTNNNNN
NNNNNNNNNNNNNNNNNNNNCTCTCGTAGATGATCATCACCAGGATGGTCTTCGTGTGCG
TAGGAATTTTTTTGTTTTCTATGCAACACTTACTACACTGTCTATACACAGACGAAGCAC
TTCTGCTTACATGTAACCATGAGTAGTACTTGGTTACCAAATTCAAAAATATACTTGTTA
GATTCCAAGTATTTGGCCACAAAATTAAAATGGTAAGTTTGGTCCTTAGTTGCCAGATTT
TAAACATGCTTATTTTTCATACTGCAATTACTTGATTGTCAGAATTAAATATGTTTAGTG
GCCAGATATTAAACATGCTTATTTTTTATATTACAATTACGTGGTTGTCAAAATTAAACA
TGTTTAGTTACCAAAATTACAAATGCTCAATTTCCTCCTTAAGAAAAACTTAGCTGCAAA
CTTAGTTGCCAGATTTTAAACATTTTAGTTGTCATGTTATAATTAGCTTTCGGTCGGAAT
TAAACATGTTTAGTTGTCAAAATTAAAAATGCTTAATTGTTTCTTTTAAAATAGTTCAGT
CGCGTCCTCTCAAAAAATAGTTAGTTGCACACTTAGTGACCAGATTTTAAACATATGTTT
AGTTGTCATATTCTAATTACTTGATTGTCAGGATTAAACATGTTTAGTTGTCATGCTTAG
CAGTATACGCAACCCAACTACCAAGGAATGTACGTATGACACATATTTTACTATTTCATT
TGTGTATTGGAGTTAGCCGGACGACACGTTTCTCCCACACCTCTAAGCCATCACGAAGCA
GCCATCACGAAGCACCATATCATGAAAGCCATCACGAAGCAGCCAACTCTAAGCCTAACT
CTCTCTATTAGGCCTTAATGTATGCTCATGCAACAAGTTCAAAAATGTCCTAGTAACAGA
AGCAACAATGGTTACACAATTCTGCTGGTTACCTTTGCTAAAAATCAGTCGACTTAGATT
TCGCGAAGTCTCACTCGATACTATAATCCGTTGATTTTGCATTGAGGTTTGGATAGATAA
AATATTTTTTCAGTTTTTTCCTTCTTACATACTATACTACTTGACTGAGACTTCACGAAT
CTCAGTCGACTGAGACCTAGACACATCCTATCTAGTAAATCAAAATGCATGATTTGAAAC
ACCGTTTGGTCTTGACATCAACGTTTGGTCTACCGTCGCTCTCGGCATCCTATGAAAGTT
GTGGGACTCTAAAAACGCTCGTGTTTTTCATAACGAGTTTCACTCCCCTCTCTACCCTTC
GTAACATTGTTTCAGACTTTACTCTTTGGGTCTTTAGATTTAAAGACCCCATCAGTAGGG
AGGCGGACGTGTCTCTATGATGTAACTCGCCTTTTTTGGCATTTGGGTAATATATTCAGG
TGGGGATCCTCTCCTCCGTGATTGTTAAAAAAAATGTTCTATAACTTGATCGAGACTTGT
TTAAATCCGAGTCGACTGAGATATAACCGTACCCAACAAATCACCATGCGAATTAAGACC
TCGACTTAAAATATTCAGGTGGGGATCCTCTCCCCCGTGATTGTTAAAAAAAATGTCCCA
GTAACTGAGCGTCTTATGGGTTCCTTAAATACCTGGATGTGCTTCCATGAAATGAGAGTG
GAAGCTGCTGGCGGGACGAATTAATGTTAGAACTGGCACATGTGATACTAGAAATCTTCA
ACTTTTGTTTTTATTCAGATCAAAAAATATACACAGATGGTCTCAATGTTAATTAATGGG
ACATGACGAGCTTGATCTCGAACTTGTCTCCGATTGCCAGCGCCATTCCACTGACGCTGA
ACACTCCACTGGTCCGGGACATGGTGTGGGCTGCCTTGAGCTCAACGTTGTTTACATAGA
TGGTGAAGCTCTTTGGTGGCGACTGCAGCCCCATGATGACCACCTTGTCGATGACCTGCG
CCCGAGTCGGCGCGTATGAGTTTCGCACCACATGTGAACTCACCTTGGTTGTGATGGTGC
CCTTGCTCTCTTCCCTGTCGCAGCTGAATCTCACGAGGGTCCAATTGCCTCCCACGCCGC
CCATCTCCGGCGAGTCGCCGTCATCCAAGAAGAGTTCCCCGCTGGCCGTCCCGTTCTCCG
CGAGCGCCACAAGGAGGTGGAGATCACCCTGGCGTGCGGCGGACGTGGTGAGGCCCGCTT
GCTGCAGTAGTAGGATGTTGCCGCCGGCCAGGTACGCGTTTGCCAAGTCCGCTGGCGCCG
GGAGGGTGACGCGCTTGCCGGCCTTCATGGTGAGGGCGACGGACTGGTTGTAAAGATTGA
ACCACCGGCCGGCGGGGAAATAGGCGTCGACGGTTTTGGCGCCGGGCTCTAGCACTGGAG
AGACAAGCACGGCGCGGCCGAGCATGAACTGCCTGTCCACGCCGTAGGTGTTGTTGTCGT
GCGGGTAGGAGAAGAAGAGCGGGCGCACGATGGGCGCACCCGTCGTGTGCGCCTCGTACA
TGAGCGTGTAGATGTAGGGGAGCAGCCGGTAGCGCATCTCCAACGCCTTCTTCGCCGACC
GTGCCGTCGACTCCCACACATAGAGCTCTCGCCGTAGGGTTGTCTTCTCCGCATGGGCCC
TGGCGAACGGGTAGAATGCGCCGAGCTGAATCCAGCGGCTGCAGAGCTCCTGGGTGGTGT
TGCCGTTGAAGCCGCAGATGTCGGCGCCCATCATGGGGATGCCTAAGAGTCCAAAGTTGA
GGATGGTGTTGATGGAGCGCGCAAGCTCGTCCCACCTCGCGTCGTTGTTGCCTGTCCAGT
GCGCGGCGTAACGGCCGGAACCGACAAAGGTAGAGCGGGTGAGCACGAAGGGGCGGCGTT
TGGTGTCCCTGAGCAGCCCGGCGTGCGTGGCCTGCGTCTGGAGGAGGCCGAAGAGATTGT
GCGCGTCGTACTCGGTCACGTTGTTGTAGTGCACCGTAGAGGCCGGCACTGTCCTGTAGT
TGATGGGAAGGTGAAAGCCGGAGTTGTTGATGCGGTAGGGCGGGTCGTCCAACGCATTGA
GAGGCTGCCAGTCCTTGAAGTTGGACGGCTCTTTGATGTCGCACCAGAGCCCGTCGACAG
GGATGGTCCGCCGAAACTCAGAGATCTTTCGTGCCCAGTACTCGGTGCTGCGCGGGTTCA
TGAAGTCCAGGAAGTAGACCTCGCCTGGCCACGCCTCGCCTACCAGGTTGGCGCCGTTCC
GCTTGAGGAACAAGTCCTCGTGAGGTGCTGCTTGCCGTTTGATAGCCGGGTGTACGGTGA
CCACGTATTTCTGGCCATTGTTGTGGAGCCGGTCGACGAACGGCCGGAGCTGCTTGGATG
GGTAGTTCACCGGATCCAGCGTGAAGTCCTGGTAATTGTCCATGTAGTCGATGTCCGACC
AGATCGCGTCCAATGGGATCTTGGCCTTGGCGTAGCCGGCGACCACGCCAACCAGATCAG
CCACGTTCTTGTAGCCATACCTGGACTGGTGGAACCCTACAACAAGTGCAAGATCCAGTG
AGCGTAGCACAAGAGAGCAATGGATATATATATATATATATATATATATATATAGAAGGA
AGGTACGTACCGAATGACCAGTAGGGCATGGGGGCAGGGCGGCCGATGAGCTGTGTGTAC
TGGTCGACGACGGCGAGGGGGGATGGGCCGGCGAAGAAGTAGAAGTCTAGCACACCGCCG
ATCACCTTGTAGGTGACGTGGGATCCGCCGTACAGTATGTCCATCCCATTGCTGTTTAGG
AGGAGCACGCCATGCGCGGCACCGCCGGAGCGCACGTCCATGTAGAACGGGTGCGAGCCG
TAGAGGTTGAGGTCCAGTTGGTCGGACCACGTCACGTCCTCGTTCCACAGTGTGAAACTG
TCATTGTGTTTGTAGCCGGAACGTCTGTTTCTTCTGCTCGCCAAGCCCATACAGGGATGC
TCGGTCAGCCGGCAGCGCCGATGTCACCTCCAAGTACCTGCATTCCAATTTCACGTCCAT
CGATCACTTGATTTACATTGATGTACTTGAGGATCAACCAAGCTACACCAGGTAACATTG
CAACGGCACACACTTGTAACTTACCGGTCCTTGAAGACAAGGTTGGCAGAAGTGTCAAAG
AGGATGTCATGCGTCGAGCGACGGGAGACGGTGAAGCGGAACGGGCTGGTGTGGATGGTG
AAGTTCAGGTCCGAAGACGGGCTGGACATGGTGTTGTGGCTCGGCATGGAGGCACTGCCC
GGTGAGTCGAGCAAGACGCCCTTTGGCTCTGGCCCTGGCGCCGCCGGGCGTGGGATGGCG
TCTTGGGGAACCTCCCATCGCTGATGGTCAGCATCGGTGATGCGCACGCGTAGCCGGCTA
TCTGTCTCAAGACTGCAGCCATGACACCGAATCAGATCTGTACCGAGCAAGAACCAACTT
ATCTACTCCCTCCGTTCCTNNNNNNNNGTCTTTTAAAAGATTTCACTAGGGGCCTACATA
CGGAACAAAATGAGTGAA