morexGenes - Barley RNA-seq Database

Contig contig_1562308
Source Contig contig_1562308
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562308 (7160 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1562308

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11992	1	1399 bp	MLOC_11992.1	Available	Available	LOC_Os08g01940.2, FRAME:+3, EVALUE:1e-65, 13108.m00127 protein non-lysosomal glucosylceramidase, putative, expressed
CDS Structure of MLOC_11992

Contig Sequence (7160 bp)

>contig_1562308 7160 assembly3_WGSMorex_rbca.fasta
CCGTGAACGGGATGCGGCCGGACGGCGCCGTGGACGCGTCGTCGTTGCAGTCCAAGGAGG
TGTGGGTCGGGGTCACCTACGGCGTGGCCGCCGCCATGCTCCACGAGGGCATGACGGAGG
CGGCGTTCCGGACGGCGAAGGGAGCGCACGACGCCGGGTGGGGCAGGGACGGGTTCGGGT
ACGCGTTCCAGACGCCGGAAGCGTGGACGTCCGACGCCGGCGGCGGGTACCGGTCGCTGC
ACTACATGCGGCCCCTCTCCATCTGGGCGATGCAGTGGGCGCTATCGCCGCCGGAGCTCC
ATAGGGACCTCCGGGTGGTTCCGGGTTCGGTGTCCGCCGTAGCGTCGCCAGCGGAGGTGG
ACCTGGCGCGGGAGAAGTTCGAGAAGGTGGCGAGCATGCTGAAGCTGCCGGAGGAAGTGC
AGCACAAGGGGTATCTCAGAGCTATCTACCAGGTACTCCGGCAGATGCTGCTCCCGGAAT
CCTGATTCTCAGGAGTGGAACTTCCAGCTTTACAAAAGATTCTTCGGACTGATGACAATA
CGTTATGTGCGTCAAAATAAAACTGCAATAGTTACTTTCATCCTAACTCTTAAAGCATCT
TCAAGGTGCTCAACCGCGCGACGCGTTAAAGTAAAGATATACCATCACTATAGCGATTTT
TTCGTGTTGTAAAACGCTAGTTGACGACACTGTAAAATATAACGTGCTCGGGCCGTTTCA
GCAGATGCTGTAAAAGAGACGCGCACGGTCAACAAAGACAACATTTGACGCTTCAAACAA
AACCAAGAAAATCAAACACATAAAAGAATGAACAATAAATAGTTCAGTTTTATTACGACC
CAAACAAATAGTTTATTTTTCAATACAACAGATAGTTCAAGAATACAACATCAAATATAC
AAATGTCTGGATATATCGCGTTGTTCCTCGGAGGAATGGCGCAATCGAGGGACGACGACG
ACTAGAGGGAGTTCGAGGAAGCAACGGCGGTACGGCGATAGCCGGGAAAGCGTCGTCGGT
CGCCGGAGCAAATTGGGAGGTGCGGGCGGCGACGCCATCGCCTCAATATGGCGATAGGTG
GAAGTCGCAGCGCGGGCGTTCGAATGTGTAGCACGTGGGAGCGGGCGCACGATGCCGTTT
CGCTCTGCGCGATGAACCATTTATGCCGCACACATAATTTTTTACGCTACGCTGGAGCAT
CCGGAACGGTTCTGCGCGCGTAAAAAATATAATTTATCCAGCGTGGCGTGAATATCACGC
GCCTGTGGAAGATGCTCTTAGACTGTCTAATTATCATATGTCTGATTTTCAATTCATTTT
AGGTTGTAGTTTAGCCCAGTCCCGTGTTGACACATGCCTTTGTTGTGTACTTGGTCCAGA
CTTGGCACTACAAATCCAACTATTTTCATTATATTTCCAGGTCGAATTCCTCGCCGGTCA
CTCCACCTCTTGAAACATTTTTACGATTGTGCATCAGTCTGTCTTTAACGGGTCCGAATG
CAAACCTGTTAACACACAAAAACAGACGATGTGCTTGTTTCCTTTCCCGTTTTCAATCTT
TTTTGGATATTGGTAGTTTGCCTACCATATTAATTGGTCATAGGGGAAAACAAACGAAAG
AACAAGAGCCCGAGCTGGGCAAACATCAAGGGAGAAATTGGTGCAAAGGAAAGAAAAGAA
AGAAATAAAACAATTTACATGTGGCCTCAGCATGGATCAAACGGGATTCTAGCTCCAGCC
ATGTTCAACAAGTTGATCTCCTCTTTGATTTTACGTAAGAATGCGCACTTGCTCCTGTAC
TCCTTCTGGAATATGCGCATACTCCGTTCACGCCAAAGCTCCCAAATCATCAGATGCATG
AGAGACAGCAGTTCTTTCCTTTTCCCCCGCATCGCTTTGGAGACACACTTTTCCATCCAT
ACTTTGAAGCTTGGTTGGCCATCCCACGTTGGAGGGTGCAGCAACGGGAGACCTGACTGT
GCCGCAGCGCAGCTCCAAATCTTCCTTGACCATGGACATTCTGCGAACAAATGAATTGGC
GTTTCAAGACTCCGCTCACAGAACCGGCAGAAGTACTCATTTTCGCATCCTCTCTGTAGC
AATGCATTTGTCGTCATGATTTTCCCAAGCATTGTTGTCCAAACGAAGAAACCACAAATT
CCCAGGGCCCACGCGGACCATATCAGCCTGAAGCCATCCATCGGTGTTGATCGGTCGAAC
TGGAGCGTGTACGCCGAGCTTGCGTTGTACTCACCGTTAGAAGAGAATCTCCAGCTGATC
GTGTTCGGCTGCCCGACCGTAAGCGCCGTGCCATCTACCAGGGTTGCCAAATTCGTTAAC
TCGGTGGCCATTTCTTCCGTTAGGCCTTGCGCCAGATCGGCTAGCCATGTCTCCCTATAT
AACGCTTCCTAGACTGATCTTTTCTTACGCACAACGACTCTGAACAGGGTTAGTGCAATC
ACCTTGAGGTATTGTCCATGCAGCCATCTATCGTGCCAAAACTTTGCAGTCTTCCCATTT
CCAATGATGATGTTAGTTGACATCAAGAAAAGGGAGCGCTCCTTTGTGTCACACGGGATC
GAAGATCCTACCCACGGGCGGTCAGGATTGCGCCAGGCTAGCCAGAGCCATTAAAGGTGA
AAGGTGATGCCAAAAGAATTCAGGTTCATGACTCCCAGCCCTTCGAGGTGTTTTGGCCTA
CAAATTTAACTCCATCCCACTCTGCACTGACCTCTAGTGTAGGAATCCGATCCAGCCCAT
AGCCATGCTCTCGCAGTCTTGACCAACTACTTTTGTGCCCAAACTGGAAACTTAAACACA
GTCATCTAGTAAGTTACAAACAAAATCAAGTTGGCTTTTAGTAGAACAAGCCACCCACTT
TTAGCCATGAGGTTGCCCTTCCAACATGCCGACCTGTTAGCAAACTTCAAGAGGAAAGAG
TCGAACTCTGCTTTGGTAAGATTTCTCAGGGACAAGGGTAGTCCGAGGTAAGTGGTTGGG
AGCAATTTGACCATGATGCCGAGAGGAGCTAGAATGGTTGCTAAGTCCAAGCGAGCACAC
CTAATGGGAAAGGCAGAACTCTTGGCATGGTTCGTTCGTAGCCGAGTCGCCGACCCAAAA
TAATCAAGCACTCGCTTAACCATTCTCGCGTCACTTTCTTTTGGGTTCATGAAAAGGGCC
ACATCATCCGCGTAAAAGAGCACCTCATGAGCTTTCTTCTCCTAGGCAGCTTGGACAGCA
CGCCGTATTTTGTGGCAAGATCTAACATCCGTTGCAGTGGTTCCATCGCAAGGATGAAAA
GAAAGGGGGAGATGGGATCCCCTTGTCTCAGTCCCATCTGATGGTGGACGAACTCAGATT
GCTCGCCGTTTATCAGTATGCGCAAAGAGGATGTACGGAGTAACATGGCGATCCACTCCC
GCTAGCGCACACAAAAACGTCTTGCCTCAAGCATGTCTAGGATGTCCGTCCAAGAGACAA
AGTCAAAAGCCTTGGCAATGTCTAATTTAAGCTGGACAGTCGGTTTCTTAGCCTTATGAA
TGTGGCGCATGGTGTTCTGGACGTACACATTTTTTTCTTGGATGCTTCAATTTTCAATAA
ATGCACTTTGGCAATGGTAACCAGATCATTCATTTTTGGACGCAGCCACCATGCTAAAAT
CTTTGAGAATAACTTTATCAGGCTGTGCAAGAGAGAAATAGGCCTGAAATCTAGCAAAGC
ATCGGCGCCGGGCTTCTTGGGGATTAACACAATCAAGGCCCTCTTGACACGCAACATCTC
TTTGCTGTCCTTACGGTGAAGCTGTTGAAGTGCAGCTAGAACATCCATTTTAATTGTTCC
TAGCAAGCTCGAAAGAACACGCCAGAGAAACCATCCGGGCCTGGTGCCTTCTCCGCTGGC
ATGTCATCAATTGCCTGCTTAATCCCATCCAGGGTGAAAACATCTTCAATATTGGACAGG
TCGACATGATCGAGGTCCAATTCATCCCATTTTAAGGCAGTTGTAGTTGGTCGTAGGTGC
CAAAGATCTTTGAGAAGTGTTCGTGAGCAAGTTGTTTCATTGCATCTGCGCTTGAAACTG
TTCCCGCCGGTCCGTGCAGGACATCAATCAAGCTGCGGTTGCATCGAAAGTTTGCATTCC
TTTGGAAAAATCTGGTGTTGGCATCACGTGCTTTCATCCACATGACCCGACTACGCTATC
AAAATTTAATTTTGAGGAGCACCGCAAGACCTAAGGATCTTGATTTTAATTTGGAACGTA
GTTCCCTTTCCTGAACAGAAAGAGGCCTAAAGTCTTGCGCCGTGTCAAGCTAGAGGATGA
GCACGGAGGCCATGGCGAGCTGCCTCTGCACATCTCCCACCAGAGTGCGGCTCCATAACT
TCAGAGCTTTGCTCACACGTCTCATTTTAAACTCCAGCGTGGTCAATGGGCACCTATGAC
CGGCCTGCTCATTCCAAGACTGAGCTACCACATGTTGGAAACCACTGATGAATTGCCAGT
ACGACTCAAAATGGAAACAGAAACGCCTATTTGTTTTGACATTTGTCGCATTGATTAACA
AGAGTGGACAATGGCCTGAGATGCTCGACGCTTGCGGAAGCAGCCTGCCCATCGGAAAGA
GCATCTTCCAGCCAACATTGCAGAAAGCACGGTCTAGGCGCACAAGGGTGGGAGTCTCTT
GTTCGTTGCTCCAAGTGAACCTGCGGCCAATTAATTGCAATTCATGCACGCAAGATCTGT
TGAGCGTGCGACGGAACTTGGTCATCCAGGTCCGGCAGACGCGGTTATTGTTTTTGTCCC
TTGGGTCGGTGATTAGATTGAAACCACCAATCACGAGCCAAGGGCCCATCATGGCGTTGT
GGATGTCCGCAAACTCATTTAAGAATGCTTGCTTTCTTTGTGAGTCGTGTGGACCGTACA
CCGTGGTCAGCGACCAAGGTTCTCCACCACCAATGGGGCAGAACGAGGTCATGATGGAGA
AGTTCCACAGGTGGACAGCGGTTGCCCTGAACCAATCGACACGCCAGCATAGGAGTACCC
CACCCCTGGTACCCTCTGCTGGCAGCACAACATGGTTATCAAACCCATATCCTACAATCT
CTATCCTGTCCGCATTAGAAACACTAGCTAGTTTTGACTCCTGCATGTAGATCATGGAAC
AGGACAGGGAGCTAATCAGCGTGCGGATTGACGCGCGCCTCGCTCCATCATTTAAACCTC
TCACATTCCAACTAAAAAGAGAAAGTTGATCATTCATAGGAAACAAATAGGCAACTCGAA
TGCGATGGCCCTAGCAGGCGGACGAGATACATGGCGAAACCGACAGTTCGCCAGGCAGCC
AAACGACGCACAATACAGGAGTTCAAAGTGCAACTAATCATGGAAACTAAAACGGTTGCA
GGCACATTGGTGCATTGAACCGAAACTCAGGCATTATTGCCCGCCAGCTCCTCCAGAATT
GCCTGAAGCTCAGCGTCAGGCAGCTGCAGCTGAGAAGGAGAGGAGAGGCCTGCAATGCTT
GCCAGCTTGGTCACGTTTTCAGGTGGCATCGGGGAGGAGAAGAACTACACGTACTTCAGC
AACGTATTGTCGATGAATTCTTTAGGGCGTGAGATGAAGCCGAGCTCGACATTGGTCGCC
GCCTGGGCGCGCCTAGAAGAGCACATGTTTGATTTCAGGCGCAGCAGTCTTGAACTCTGT
GTGACTCCTTTCACCACACCGAGGATACGCTACCTGAGAGGCGTGGGTGATGGTGTCGCC
ACAGGCGGTGCGCCTAGGATAGATCTGGAGAGCAGCGAGGCTATCTTGCTGATAAAAACC
TGCTGCTCGCCAATCTCCAGGGTAGACACTTTCTCTGTGATTGCTGCAAGCAGTTCTGGG
CCAGAAAGGTTTGCTTCAGCCAATGCCTTCCTAGCACGCACTTCTTCCGGCGATTGCACA
TGGCATCCAATGCTGCCTGGCCCAAATGGTGCATGCGTGATGGAGCTGGAGCCTAGACCA
AAGACCACCTATGGGCCCATGGCCCAGCTAGTCCCAAACTGCGGCAAGGTCGTCTGCACA
GCACGTGAGCTGGGCAGCCAACAAGGTGCAATAGCTTCCATCGGCGAGCTCCATGCCGCA
TTCCACAAGGGCGCAAGCGTCCCACCATGGGCAAAAACGACAAGGTCCAGCGAAGGAGGT
AGAGGAGGCAGCTCGTAGCTGTCTTGGGTCGGTTCCTGTGTGAGTACCTTTGCTCGCGCT
TGCTCGAAAACCAAGTTGTGCTCAGATTGCGAGGGGCACAGAGGCAACAATCTAGCCCCT
GCTGATTCCCAGCCAAACGGGTCCCATTGACCCTCCTCTTGCTGCACTAAAGTGTGAATC
GCACCTTGAACAGAGACCAATGGAAAAGGCAGGATATTGTCCATCCCAGTGACACCCATC
TCTACCATATCTTCTGTGTGCGTGCATACTGAATCAACCACATTACGAGCATTGCACATC
TCATCCGCTGAACCTCTCTTGTCACCCTGCCCCCCCACGCCATCATCTGTGTCTTCGGGG
GCCACGCGCAGTGGGGGTGAGACCAGCAACCTGCCCTGATATGCTGACCCAGTCAAAACC
TCCTCCTGGCTGTCATTTTGCCTCTCCACCTTCTTAGACTATTCCACTTTCTCAGACCGT
TTCATCGTCATCTCTTCATGCTAAACCATCTCCATCGTCATCTCTTCATGCTGAACCATC
TGCATCTCCCCCTGGGTAGGCATAACATTGGTCGCGATAGCCTGTCGGCTGCCCTGCCTT
ATCAGCAGCCCCGCCTACGCATCATCACCAACCGGGACCTGGCCAGTGCAGATGGATGTA
TGTCGACGATGATGCCTAGGATTCGGTTCCCTACTAGCAGTGTCCCGGCACATGGCGTGC
TCGCACATGTTTTGGAAGAAGCGCTTGTGCACCCCTCCCCACGAGCCGCGACGACGCCTA
CTGCTGCTACCTCCTCCATCCCCCTCTTCTCATTGCTTCGGCGTCTAGCGAGGTGGTTAG
AGCAAGAGCTCATTGATCTGGCCCTACCTTCTCCATCCTTGGTGCCTGATACGTCCATTT
TGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTACTTCTGGTAC
CATATTTATGCCTTTTATCT