Contig Data
morexGenes
Links



Map Locations of contig_1562233 (3772 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1562233

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11961 2 1664 bp MLOC_11961.1 Available Available LOC_Os04g38410.1, FRAME:+1, EVALUE:4e-144, 13104.m03686 protein chlorophyll A-B binding protein, putative, expressed





CDS Structure of MLOC_11961






Contig Sequence (3772 bp)

>contig_1562233 3772 assembly3_WGSMorex_rbca.fasta
TTTCTTCAGTGAGAGGGGCGCATTGTAGTGGGTTCAATCTGACGAATTTTATATCCCAGT
GACATAGTAGGGGACAAGATACGTCTTTCATTGTTGCCACTAAGGATAAAATGATGGGGT
TAGTTCATATTAACTAAATTCTCCTTGTTTACATCATGTCAATGTTCTCCAAGCATTACT
CTGTTTAATTAATACTCTAGATGCATGCTGGATACCGGTCGATCGATGGAGTAATAGTAA
TAGGTGCAGGCAAGAGTCGTCCTATTTGCTTATGGNNNNGATGCATATATACACATGATT
ATTGCGGTGAATATCACATAACCATGTGCTTTTTTTATTAATTGCACGACAGTAATTTGT
GTACCCACCGTATGCTTGCTTTCATGAGAGATACCACTAGGGAAAATTATGGCCCCGGGG
TCTATTCACTTATAAGTTTACAAAAACAACAATTTTCTCGTTTCCTTCTTTTACTTTTTA
TTTACTTTTCACTTTGTAGCTTCCAACCATACTACTTACTTGTTTGCAAATAACGAAACA
TGGAGATTGACAACCCTCTTGTGTGCGTTGGGTGCAAGTGTTTGTTTCTCTTTGTGCAGT
CGCCGAAGATGGGGGTTGGCTATATTATTAAAACTATAACACTACCAATAATGGAGAATG
GACGTTTGGCTCCCGAGCACCATGGAGGCCTTTAAATTTGAAATCAAATTTCATGAAAAT
TCATATTTTTACATTGCAATTTTTTTTTGAAAAAATACAGAGATATATTAGGGCGTAACA
CACATGTATTTAAATTTTAATGGCAAAATACGTTAAAATGAGAGTTGTGAAAAAAAGATA
AATCTAAAGGTTTTTAACACATGATACTATTCGTTTTTCATTCTGAAATTTTATACACAT
ATATATAACATCTTTGTTTACTTGCATAATTGTTTTCAGATATTTTTCAAAATTAAAAGG
TATGAATTTCGAATTATTTTCAGAAAAAGATCTTCATGGTGCTCGAGAGCCAAAAGCAAT
TTATGCCAACAATGAAGATACGTTACTCTTCACTATAACTAGCCTGATACTGCTTCAATT
ATACTTACTCCATTCTTAAATATAAGACCTTTTACAGATTGTACCATAAACTATATACGG
ATGTACATAGACATATTTTAGTGTATAGATTCACTCATTTTGCTTCGTACGCAGTCTTCT
ATTAAAATTCCTAAAATGTCTTATATTTTGGAACGGAGGAAGTATATGGTACCAGCTTGC
AATTAACTTCGTTCGATGTTCGATGTTCGATGTGCGGTATGTCATGTCATCTCCAAAGGT
GACCGTCATCGTGTGACCGGGCAGTTATAAACGCCCATTGATCGATCGAGCCTCTTTCAC
TATTCTCCACCGGGATCCTATGGCACGGTCCGATTGGCAGGCAGTCCCCACAGATCACAA
GGAGCATCAAGGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATG
GCGCCACCTCCCCATTGGCCAGCGCTCTATCCATCCTACCACCCCCAGGATTTCCCCGCC
CACATCTTGTGGCTGCCGTGCGCCGCAACGCCACGATTTAACATCAAAACCGTCGTGGCA
TCCTGCAAATCCTGCGCGCTCCAACAGACGTCCTAGCTGCCACTCCGCCGCCCGCGTCAG
GGACCTCACCGTCACACCGGCGAAGCAAAACCGGCACCCATGGCGCTCGCCTCCACCTCC
GCCACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGTGCGCTCGCC
AATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACACGCCGCGTGGTGGTCGTCGCCGCG
GCCGCCGACAAGAAGTCGTGGATCCCCGCGTTCAAAAGCGATGCCGAGTTCATCAACCCG
TCCTGGCTCGATGGCTCGTAAGTCTTCCTCGCTCCTATTTCTCTTCGTTCGCGCCGCATT
AATCCTACTACAGTACTACTCTACACGAGGGAGGCCTCCATGCCTGCACCTGTCTGAGAC
TCACTCAACGCGCGCGTGCAGGCTCCCCGGTGACTTCGGCTTCGACCCCCTGGGGCTTGG
CAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGCTGGGC
GATGGCCGCGGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGA
GGCCGGAGCGCAGCCTGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTCGGCACCCA
GCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGGTCGACTTCTTCAACCCGGACTC
CCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGAACTTCGCCAACTTCAC
CGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCCCTCGGCCTCGGTGGCGAGAC
CAAGGACGGCATCTACATCCCCGACACCGAGAAGCTTGAGCGGCTCAAGGTGGCCGAGAT
CAAGCACTCGCGCCTCGCCATGCTTGCCATGCTCATCTTCTACTTCGAGGCCGGACAGGG
CAAGACGCCGCTCGGCGCGCTCGGTCTATAAGATGATTTTTGGCTGGCGCGCGGTGGGAG
AAAGGGTTTGTTGCATCGCATCAGATCGGACGCATGGATTGAATGGGATCTGCTCGACGT
CGAACAAGCAGCAGCATTTTATCTGTGTCCGTGACTTCTTTTAGGTGGCGTGTGTAAATC
GAATGGGGAATCAAGTACTCTTTCTTTCTCCAGCGTATGTACCATGTAATATATAGTCCG
AGCTCTGTAATTTAAGGCAGAATGGGCAAAAGACATTTGATTCATTGCCTACAAAGTCTT
TTAGAACTTTGCTTGCATGATTTGCAACATTTGAAGGAAGCACGGAAACTATCAAATTCT
GAACTGCTCGGCGAAAAACAAGATCACCCGATTTATGCAGAAAGTAGCACAGATAGTCGT
GCATTGTAACGGAACAAAACATTGCCATGAAATTAGTTAGGATTGTATGTGTAAATATAG
CGTCCAGTGTGTTACAATAAGAGAGAGAGGGAGAGAGGAAACTGAAACAAATTTAGAATG
AACCATAAGTGCAAGCAAAACATCTCATGCCGTTCGTTGCAATCAAAGGAACTTTTGACA
TGAATTTAGTAAGGATTGTATTGTATGCGCAAATACAATGAGAGAACGGAGATTTTGTGC
ATTTTCATGGTGCCTTGGTACTCCTTTGCGTAGAGATAGAGTATCACTCAAATCTCATCG
TCCATTTAAAAGGCTAGTTTAGTATTTGTGTTTTAATTTAGACTTTAGACTCCTAATCAG
ATCACGCGTCTCACCCAGGCAGCCGCCATGCGACTAGACCACACATGCCGCCACCAATCA
CACCCTTTCTACACGCCTTTCTACCTTGGCTACACCGACTCTCCCGCGTCATCCTCTTCA
TAATGAGTGAATTGCAAAAAATGTCAACATTGAAGGTTAGGATTATGGGAACCACAGCTC
TATAGGTTTGTGACAAAAATCATTAATTTTGGGCTTTTTTTTTTTTGCAAAAAACACTAG
TTGTCGTCTTTGGTCGTTTTGATGACGATTATGATATATGGGCCCCATAAAAGCTGATGT
GGCGTATCAATTGACATTTGACGGTGTTAGATGGGGTTTGTCGTCGTTTTGTCACGACAG
ATGTCATGGGTAGGCTTATCGAGAGTGGTTGGGACCGAAGGGACACCGGCGG