morexGenes - Barley RNA-seq Database

Contig contig_1562217
Source Contig contig_1562217
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562217 (7296 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1562217

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11952	5	2581 bp	MLOC_11952.1	Available	Available	LOC_Os03g12570.1, FRAME:-1, EVALUE:0.0, 13103.m01440 protein expressed protein
CDS Structure of MLOC_11952

Contig Sequence (7296 bp)

>contig_1562217 7296 assembly3_WGSMorex_rbca.fasta
GATTGGTGTTTGTTTTTGTGGGGGTAATAGTTGTGTGTACTTAGAGAAATTTTTGTTTGA
TCTTTTATTAGTAGTATAGATTTGTTTTCTGCTTCTTCCTCTGCTGACCAGGTTCTTCTT
CCTGATGAGAAACCTTATCTGCTTCAGATTGATGGTTGCCTTGCCTTTTGGGTGTATTAC
ACCCATTCAAGTGATCCTTGTTGCTGGTAGCTGTTTGTTGTTTTCCAGTAGATTGTTCAC
ATTGCTTTGAGAATTGCTTTGTGTCATGGAAAGCAGATAGGTTCTTCCTAGCTTCCAAGT
ATGCTTTTTTAGCCTTTTGATATGCTTCAGTAGCTTTAGCATAGAAGCATACAGGGCAAT
TAAACTGGACAGAAGCATCAAAAGTCACTGATGAAGCAAAACAGCCGTCATAGGCGGCTA
ATGAGCAGCTGCTACATTTCAGCAACTGTCCATCTTTACCACATTTTATGCACAAATCTT
GCCCCGTAAGGCCCTTGATGGAACCATTGACATCTTTATCCTGACTAGAGGACGGCATGT
TGCCCATAAATGATAAGTACGAGACAAGCGGCTGCAAAGCCACTGGAACTGTCATCAGAG
TAATTCACATTTGATGTTTCCACCACGTTGCAGCAAGGAGAATTCCATTTGACCAGGACA
CATTTCCACTGGCTGAATCCTGGCACTGCCCTCGTTCAGAACTTGAACTGCTGTCTCGCC
ACTGTCATGTTGCGGTAAATTCCATTGGGTTTTTCTGCCATGTAATTCTGTCATCACGCC
TGTAACATCTGCAGCAACAAACTCAGGCAAGTGATTTGTTTCAGATATATCTGCCCGTAA
AGCATTAGTTCTGGAGTTCGCTCCATAGGATCCTTCTGTCGCGGAAAATCAGAACTATCT
GTATCGCACACATGCCTCTATTATGTATTTTACATGATCAGGGCTGATGCTGCAGAACGA
CTGGTCATTGCCATTGCTCTTGCCACCCTGCTCCATTGGGGACGGTGGGGCCATACGTGT
GAGCTCTGGGTTCACTTCTTTAAGCTGAACATAAAGCAAGAAGCTTAACGATAAGTGAAT
CATATCCTTTTTTGTATTTTCGGTTTTGAGAGTAACTGTTTTCACATACCAACTCAAAAG
AAGTTTCTGGTAAAGCCGGTGATTTGGTATGTATGAACTTTTGGATATCCTTGATAAAAG
GCGGAAACATGGCTTTCTCCAAGCTTCCTGAACTACCAACCTGCAGATGTTACATTCATG
TAAAGCAGAACCTCAAAAACATCAGCATCTAGGCACTAACTAGACTGCAGCATGTATTAG
ATTCCACAAATTAAAGACACCAAAACATATGATGGTTATTTTGCCGAAAATATAATAGAG
CTTAGTCACACACACACAAAAAAGTGTGGCCGTTAGAAAAAATGCATAATCATTATCTGA
TGCAAATATCTAATATGGCATCCGCCGCATCCCTGCTCCTAACACAAATTGAAGAATTTA
TTAATCTGTAAAGCGATGCTGTTTCGATCTTCGGGGACATGGTAAACTTATAACTAGCTA
GAAACACCATTGGCACTACACCGATATTACTTCAGTGATAAAATGCGAATCAGAAATCTG
AAGTTTTGAACAACCAGAATGAGTGCACGTGCTAACAGAAGCACCGCATAATACCTGTCC
GAGTAGCTCCAGCAGCAACTCCTCGCAGGAGCGGGTGGCATCAACCCTAAGAATCGTCCT
GCCACGCCGGGACCTCGCCCTGGGCAGTGACAGAGGCGACCTCCTGCAGGCATAGGAGCG
CGAACCGAGGGGCTCCGGCGAGGCGCCCACCAGCGCTGCGGATGACGGAGAAGTCGAGGC
CTCGTCGCCGGCGAGGGCGTCGACGACCCAGTGCCAGTGGGCGGCGACACGGCGAGCGGA
ACGGGCCGCCGGCATTTTGGGAGACCCGGAGGAGTTTGAGGGGTAAAAATGCAAAAAAAG
CTCCACTTTTTCTCTAGGACTGGATCAGACAGAACGTGTGAAACCACCCCCTACACTCAA
CTACTCCCTCCGTCTCAAAATGAGTATCCCAAATTTATAACTAACTTAATACAAATTGTA
TACTAAATCAACGACACTTAGTTTGAAACAGAGGGAGTATATCTCATGCTCAAATCCAAC
TTAAGCTTTGCATAACCCAAAAATGATGAACACCAGACCAATTCCAGTGGAGAACAGACA
ATAATAATTGTCAATGGGGCAGGTAGCAACAATGGAACAACATACCAGTACCAGTTTCTT
CATCTACGACTAAGGATCTCAACGATCACAACAAGTTCAACCAGCCAACCACTCGAGCAA
TCCTTACATGCTGCAGCAATTTAGTTCCCGCGACAAATGGACTAGACTCGAACACCGCCA
CCACAACACAACAGACAGCCTCCGCTCTACTGCTCGACCACCTCGCCGGCAGGGGTCCCA
ACGGAGGAAGCCCTTGCCCGTGCTCCGGTCTGCCCGACGTTGGTGAAGCTCTCGGGAAGG
ACAAACAGCGCATCATGCCCCGCATCCACCTCGCCCTGGTACGCCCGGCCCAGAGAGTAG
CCCAGTGCACGTGCGACGGGGACAGCCACAGCGTTTCCGACTTGGATGTACCTGCAACCA
TCATCAAGATGTTTCAGATTGTGTCAAAATTTTCAAAATGGTTTCGGTTTCCAATTTTCA
ACAGCATAGAGGAACTTACTTCTCCTTCATGGGACCGTTCATCCGGTAGTAGTCGGGGAA
CCCTTGCAGCCTAGCGTTCTCGCGGACAGTCAAAACACGTCCCTGGTTCGGGTGCAGAAT
GATCTGCAGGCAGCACAATTGACCAGCTCAGCAATAAAGAAAGAACTGATTGCGGATAAC
ACTAGAAAAACGTGTGACAAAGCTGACCTGGTTATGCGGCTCTGCTCTGGTCACAACCGT
AGGCACCGTCTCATCCCACCACAACCGACCAAACGGCCTGCAAAAGCAATAACATCATGT
GTGTAAGCAAAAACAGATGTAGTAAAACAGTAGAGCTGGAGATATGAAGGCACTTACTTT
GGTGATCTGCCCTTGATGAAGGACATTGCATAGTCAGGGACCTGTACACATAACAAGCTA
GCATTTCAGCAATTGTACATTGTCTCTTCATTTTTATTACTATCATCAGTTGTCCTAGTT
TCAGACAGTAGTCCTAGGTCATGTAACAGAAACTTTACACCAGCATACACACATTCAAAA
AGGAATTGCACAGTAGAATCTATACCAAAGGTTTGCCAGACTTGAGGTAGACACGCTCAA
CTTCTGGATCCCACTCCACAATGTTATTCGCTCCAACCTTGACGCCTGGCAAGTCACGGA
AATTTGCTCCCTGAAAGACAGCAGACAGGTCAAGCATGGTCAGAGGGAAAAGGAGAGAAC
AAGCACTGAAACTATTCAATATCCTACCTTCTTTATCGGAATCTGCTGGACTCGGTCATA
ATCATCCTGGTTTAGCCTTAAAGGCTGGTGGTCCAAGAGCTTGCCTTCTTCAGGACAAGT
GTCATCACCAAATGAATAGTCCAACATATCTGGAAATTTGAAACAAGAACAAATTCACGA
TACATATACAGGCATAAAACAGAAACTAAAATCTGAAATGCAGAAGGAAAGGCCTTTCCA
AAAGTAAAGAAGATGAAATTCATCTTACTGGTATTACCTTTACGACTAAGTCGTATATAC
CGCTGGAATTCAGTCTTGGGTTGACCACGATATTCAATCACCTCATGTGGTTGATAGTTG
TCAACCTGCATAAAATGTGTAAGAACAAATGTAGAAGAGGAAGAAATGAACAAGGGAAGA
AAGCACTTGCCTTCGGCAGATCTGAAATGGCATCACCAAGAAGGAGAGCTTTCTTCAAAA
TTGGCCTTTGTGTCTCATCATACGCAACAATGCTTTGCTGCAAATGAAACAAGCTAGTAA
GCACATTTACATTTCTCCAAGTCAATTTCATAAAATTTGTGATCGGACTTACCGAGAAAG
CATTTGGAGCACCACCACGAACAACTACATCATGAGTAGGAAGAGGATACTTTGGGAGGA
CCTGCCAGGCAAAATACATCAGATCACCACATTAGGCAACATATTTGCACCACATATTTA
CAGTGACAAAGGAACAGAACAAACCATTGTAGGAAGAGATCCCCAAAGGAACACCCGCAT
TCTGAACTGAGGAAGCCCATAGCAACCAGCTACCATCATCCCAAGGCGGGCTTGGTAGTT
CAAAGACACGAGACGGCTCAATGCGTATCTACCGAGATAACCATCAGCAAATTTCAGAAT
GTCCACGACGTTCTCCATCAGAACAAACTTTGGTTGCAGGTAAGAGACAATGTCCATATA
GGTAACCATTTGTTGATTTTTCTCGTCTTGTAAAGGGTTATCACGGTTTCTAAACCGGTT
GAACCCACTTATCCCTTGGCAGGGTGGGCCACCACAAATAACATCAACCTGACCCTGTGG
ATTTTGACAGCACAAGTAAATGGAATCAGACAATATGGAATGGGACTAAAAAGACTGAGA
GAAGAAAAGTTACTCACAGGCTGGGGTAGAATGTTTCGCTTGTACCCTTCTTGCACAAAC
TCCTTAATTTTCAATGGGCAATCACTACGTACAAAACAAAAGTCAGTGCACTGCAAACTG
AAATTACCATGCTGCAAACATACAGCAAATGAGATACCTACCTCAGGTTTTCAATGGGCT
CCCAGGTATCCTCTTCTGGGCCATATCCTTTCCATTGAACCTGTAACAGATTATTAGATA
AATTGATCAATACATAAGAACCAGAACTAATAAAAACTACAACAAGGGGGGGACCAGAGA
GAAAATGGGATTAGCACCTTAAAATAGATTCCATTTTTCCTCCCACTGCCACCATAGCAG
ATCCCAAGAAGCTTTTGAACCACAAACTCATCCTTTCCAAGAGGCTCATCATCTTCCTCT
TCCTCAACAGGTTCTGCTGCATCAGAATCATTGCCATGGACATATTTGTCGCATAGAATC
ACCCATTCCTTAAGAAGTGCAAGAAAATCCTCAGCCTTTTCATTTCGAACCTGCAATCAG
AGATAAGATCCTTTATACCAGGTGTACAGAACAAATAGAATCTAAGAATGAAGTTTAGTA
GCCGCACCTCTGTTTTGGGATGGTTATATTTAAGGCTCTTGCATGCAAAGCTGTTCAGGT
CAACAGCCCATTTCTATAAAGAAGAAATGCAACAGTCAGTGCTGAGAAATGTCAAAAACA
TAGTCTTATACAAAATGTAGGGCAGGCTTATTACAGTTTCAAGTTTCAGGCCAGCAAGCG
CTGAACCCAAGCACAGCCCTGTTGACATCCCACCACAACCAGAATACAGATCAAGGAGGG
ATGCTGTTTTTACTGGGGTCCCATTCTCTGAATCAGCATCAGTAGAAATACCAGAGTTCT
CGGTGGTGTCTACAGGAAATGCAAATTTCAAAGTGAATATTGATCATAAGATGGAAGAAT
ACAGTGGCAAATCAATTGTTTAAATTCTGCGAGTAAATAATCTGTCAACCAGTTTATCTG
TCACTAATAAACTATCTAGTCATAAAGTACTCATTCTTTAGATCACAAGTTGACAACTTG
GAATAGATATAACATCGGAGGATCATAGAAATTTTAGCTCAGCAGCATATGTTGAATTGC
ATGTACAAGTTCAAGTGATGAAACTCAGAACCAGACATGATTATGATCATCAAGGAAAGG
TGAAAGAATAATTTATTATTATTATTTTCAAGGCTTATGAGTTAACAACAAACCAAAACA
CCCCTTGCAAAGAACTGTGGAGGAACTAAAATAAATAAACAATGCTGTGTAAAACATGCA
GCAGCAGCAGCATACAGTGCACAGATCAATAGCTAGTTTGTTCATTTGTGTTGCCATATG
CAGCTAATGTAAGCATGAAACTGCAATTACCTGATGGGATGTTAGCAAATGTAGAATAAG
CAACAGAGTATGACATGTCATAGTACAAGTCAGTGCCAGCCACCAGTTTGGCCTTGGTCA
CTGAATCCGTCTGAAATCAAGGGAAGCATACAGTGAGAAAAAAAAAATTAAATGGCACTT
TAACAATTGACAAAGTTTGAACAGTGGCACCTACATTTGGATCAACATGGATTATCTTGA
CCTTTGATATGATGCAATCAAGTGGATTATCATTCTTTTCCTCAGAGAGAAAGACACGCT
TTGGGTCATGGGTGTGATCATTGACAAATTTGGCTCTAGATATCACCTGCAAGATGACTG
TTAGTTTGCCGCTATATAGGCATACATAAGTACAGAGTGCGCATACCACAACAATGCTCA
ATCAATACGCACCGTGTCCTCTGGACGGAAGAACCAGCGACATGTGAAGTAGTTGGTCTT
GTCAACACCCTCAAAAAACTCAGTTATTCGGCCAATGTAATCTGCCTCATTTTCCCCAGC
CTACAAATGGTAATGAAGAAATCAAAATTTAAGATAGGAAGTCGCTACAGAAGCTGGATG
ACAATATGAGAGCTCAACTATTTGGTTGATATACATTTTCCTGGCGAATAATTAAGTTGA
CAGTTAAGAACAATGTGTAAACAAGTACTACAAACATTGCAGGGTAGATACAAATTAGTT
GACATTTAGAGCATCCAATATACAATCAGGCTATTCATAATGCTAGAAATGAACAGGCTA
TTTTGTAGTAAGAAAATACAGATGTTACAGACTGCATCCATTTCAAATTATATCACAAGC
CTTTTTTTATACCCGTGTCAAACATTTTGTGTGTGGATGTAGACAGTAACTAGTCTATGC
AATTGGGACAGTTACTACCATCTAGAAGAAGAAAAAACAGGGCTTTACACATTGCTCCAT
TGAAGGAACCAAGCATCAGAAGTCAAGTACACATGCGAGCTTCACGAAGGAAAGCAGGCA
CTTTTATGGTAGGGCGTTCCTATGGTAGAAGCGAGACAGGGAAGAAGGGGTGCGGGGTCG
ATCCGTTACCATGACGTAGACGTCGTCGCCGAGCGTGTAGTCCACGTCGTCGACCTTGGC
GGAGCGGTAGTGGGCGCGCGCCTTCATGTCCTCGTCCTCCTCCGGCCTGCGCAGGCGCGG
CAACGACACAAGGGTCAACAGAAAGCAACCAACCGGCCGAAACGAAAAGCAGGGCAGAGA
TGAGATCCGGGACGCACCGCTTGGGGGAGCCGCGCTGGTAGCGCTGCGGCCACTTGGCGC
GGGCCTCGTCGGCGGGGACGGGCTCGCCGAGGAACT