morexGenes - Barley RNA-seq Database

Contig contig_1562212
Source Contig contig_1562212
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562212 (7776 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1562212

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11950	1	825 bp	MLOC_11950.1	Available	Available	LOC_Os03g11230.1, FRAME:+3, EVALUE:2e-71, 13103.m01266 protein expressed protein
MLOC_11949	3	4197 bp	MLOC_11949.3	Available	Available	LOC_Os03g11240.1, FRAME:+2, EVALUE:4e-60, 13103.m01267 protein nucleotidyltransferase, putative, expressed
CDS Structure of MLOC_11950

CDS Structure of MLOC_11949

Contig Sequence (7776 bp)

>contig_1562212 7776 assembly3_WGSMorex_rbca.fasta
TAAAGGCTTTGTTGTTGTTGTTGAATTTGTTTCATAGGTACAGTTATAAAAACGGCAACT
CTAATAGCACAAATGTGTTTACCTGTAATATTCAAGAGAAAATGTTCTTCAGCTTGTCAT
GAATACAGTTTGCACCCCAGAAACAGACAGAGAGTACCGTTACCAAGTGTCTGGTTCCAT
GATGCTTAGTAGTAACTGGTAAAGCCTAGTCAAGAAGTATTAGTAGTAACTAGTAAGTAG
TAACTGGAACCATCTTCTTGAAACTTTCCTTGCAATCCATCAACTCAAATGTTGCCATCG
ATCTGGTTCTGTTGTACTAAGATCTTTGTACTTAATGTGGTTATAATATCCTGTAAATAT
CGCTACGAAGGTGTGGATTTTAGTCATCACTCATCGCTAAGTGAAAGTAGGAATTTTCTT
TGAAAAGTGGAAGTAGGAACAATTTCAGTATCCCTAAGTGTAGTGCACATGGTGTTGGCA
TTATGGTTCATTGGCTGATGGAGTCTCAGCTAACTGGAGTGTGACTGGTCATCCGTTGCT
GCATGGGAAACTCAAGAGCTTATATCATGGATATAAGATATTCTGGGTGATGTATAGCTC
TATCCCCCTCCACCACTTGTGCAGTTGTGCCTGAAGGGCAATATAGTTTATCAGGCGATT
CTTTATGAACATGATAGTTGCTTTACGAACATAATAGTATTTTAACTGGGAATACTAAGC
TGTCAATTCTGTTTGTTGCATTTTCTCAGAAGGTTCCATTTAGGGACCGAGAGCGTCCCT
CGAGTTCAAGATACTACAGAGGAGGTTATAATAGTGACAAGGGTGACAATAGTGATAAAG
AAGGAAGTTGGGCAAACTCAAGACAACGAAATACAGGCCGCAACTATGGACGTAGCCAAT
CAGAGAGGTATGGCATGAGGTCTGATAGGCAGACAACAGATGAAGGTCAGTTTGACAGGC
AGCGGAGATCCTATAGAAATGACTCACACAGGCATGAGGCAGGTGCTCAATACCTTGGAC
AGGGTCAATCTCATGGATCCACAAACTCTACTCGCAGACCAGGGAATATGGCACATGGGG
TTTACTCATCACCATATGCAGTGCCAAATGGCGTTGGTGCTTCAGATTCACCGTATCTTA
TGGTTTACCCATACGAACCAGCTGCAAATCATGGTTCTTCCTCTGAACCGCTTGAATTTG
GTTCACTGGGGCCAATCTCTATGGCAGATGATGGTGATCTACCACAGCCCACTCGCCAAG
TAATGGCCAATGGCTTTTATGGGCAAAGACATACTGCCTTTAGGGTTAATTCCTCTCATT
CATCTCCTGATCAACCATCCTCACCTCAACCTCGCAGGTAATATCCCTCGCTTGTCTCTT
TTCTTGCATATCATTTCTGTATTACTCCCTCCGTCCAAAATAAGTGTCTCGTTAACTTTT
ATTTGCGAAAAGAAACTGGTATGTGTTTCCATGTGCATCATCAGAGGTAGTGTGATAACA
ATTGCTACTGTCATTCTAGCTAAAATTGAGTAATTGACAAAATAAATAAATAAATACCGA
ACGAGTGATATGTTTTGGGATGCAGTGGAGTTTTAGCTACTTAACTTTCATTCTTCGGCG
TAGCTATCTTTTTCTGTTACCCTTGAGGATATGACTTGTCGAGCTGACATTTTTACTATG
CTTTCTGCATTATGCTGAATGTGATGGAGCTGTGAAAGCTTTAACTTTGGCACATCAGTA
ATTATGTTGATCAAAACATGGAATAAAGAATGAAGTGGAAGTTATCTCGCGGCAAACACG
TCATATATCTTTGGATATCTATTTTGTGTTGAAGTGCTATTCAATTATTGTTGGCTAAAC
ATTTTTGTTACTACCGAAAGAGAAGATAATCGATATCAGTTCTATGTTTCGTACAAGCAG
TATTCTGATGATTATTTTACATGGTAGTTATTTGGTTCTATTCTTCAAACATTGTGTCAT
TAAATGAATTACAGTTGGATCAAATTACGTAATAATTTCATAAATTATTCAGTTTGCTTC
TGTGGAATGCTGTCTTGATTGTTACCACTGTCAGTATTTTGCAGCATCTGTTGTCACCAC
CCTGATCCTTATGTTTTCTTTTGAAGGTAGCTGGAAGGATACGATAGCTTGGCTCTGATA
CTGAACCGATGCTCACCCTTCAGTTATATTTAGCTCTGGTGCCTGTGATTATGTCGTACG
CGACTGCATATTGTTGGACCATCTGGTGTCTGGAGTGCACATGTGCCTTTAGCTGGTAAG
CAGCTGGTGGCCGGATACCTCACCAATATTTAGTTTGTCCAAAGAGACATCAGTCAGCAG
CAGGTCATTTTACTGGCAAGTAGCTGATGATACTTTGAGATGCCTCGGGAATATTTAGTT
CCATGGAAAGACGCACCAGTCCTTCCAACATGCTTTACTGGGCTTTTCTGAGACTAAAGC
AGAATCACCTTCTGAATAAACCATGGAACCGGGAAGACGAGAATATATCCTCTTGTCGAC
CCAAAGGATATGATCAAGGAAGGGTTAAGCCAGAATGCCAGCCCTCGTATTGTCATCTCG
ATATCAGAGACAAAAGTGGGGATTATCATCAGATTCTACTAGTACTGCCTGGGCACCTAT
CCAGAGCCGAAAGCTAATAGTGAACTCATGTCACTGGGCAGAAGCAAGATCATGTAATCA
TGTTTTCACATATGGAAAACTTTTCACGTTAGATGTATTAGGGTTTAAGAATCTTGAAGT
TGAGTTTCTAGCTTCGAGGAATATGATTATCTGAATTACTCTATGGCTAATGAAAAGATC
AATCGATCGCTTCGTTTTGATCAGCTTCTTTTCTCAGACGTGCTCTCTGATGGTTTTATT
CAGGTGCGGTTTGATTTCTGTCCGGTTGTATATGCCCATCCCTTGTGTTGAGCAATCTGA
CGTTCTCTTGTGTTGAGCAATCTGATGTTTTACCAGTTAGGTGCTGTCGATTCAGTTTCA
TATCCATCGGAAGTGCGCCATACCAGTTACTCTTCCTTCTGGTTCGTTGATGGTAAGACT
AACAGCAACAGGCAGTTGCGGTTCAAGATGTAACAAAAAATTCAAATTTCGCATGTAGTA
GTACTGACAGTATAAGAAGCCATTACTCCCATTCACCTTTTTAAACCATCTGCAATTCTG
AACTAAACTGTGTATCTGTCTAGTGTTCCTTTCCCCCCTCAAGTCCAATCTCTCACTCTC
TAGCGACTATGCTGCCACTAGATCCTGCCGCTGTGGCAAGAAGCAGTTATATGCAGTGCC
ACAACTCTCTGTGTTCCTGGCGAGCAACGGAGAGCTCCGTGATGCGTGTGCTCATTCTCC
AACCCTTTTCTTGAGCTCCGTGATGAAGTCCTCCTTCTCCTGGTCCGTCATCCCCACCGT
GGAGCAGTCGCCGACGCCCCACTCGGCGCCCCGCAGGCAGTACTTGTCCTGGATCTCCCT
CTCGTTCCTGGAAAGGAGTAACATTGTTTGCCCCAAGGGATTTGTCACAAGAAGATGGCA
CGGAAGCAGCTACCTAGAGAGCTTATTTTCAGCGCAAACGCGCACGTACTTCTCTTTGTT
TTGCTTGGACTTCTGGAGCAGCTCCCTGAGCACCTTGGAGGACTTGAACCTCGAGTCGTT
CTCCGCGTACTTCCTCTGGTTCTCCGCTTGAGAGTTCATTCAGTGCAGGTCAAGGAGACA
TAAATAAGCATACACAGCAAAACCAAATTGGATATACGGTACTACTGTCTGAGATGAGAT
AGTGTAGAGCAAGTAGCTAGCTGAACCAACCATTCCATTTGTCCAAGAACTCGAGCCGGG
GCAACGGGGGTGCTGGGATGGACTCCAGCCCGGTGGACCCTGACAGGATGCCGGCGCTCA
CTGCAAGTTCGCGGACCAATTTCAACGGGTGTTGGCCATTGCCGTACGTACGTGACTCTG
CGTGAAGGATTTGCACCCTACCTGGAGTGGACCAGAGGACGAGCGAGAGGGAGACGGCGG
CGGGGACGCCCAGCAGGAACGCCCGGCCGCTCTTCTCCGGCGTGCTGCAGCGGCCCCTCG
CCGGCGGTGCCGGTGGCGCGCTGCAGAGGACGCGGAGGCCGAGCATGGTGCTTTGCTTTG
GCCTGGCTGCCTCGCTAGAACGTAGGCGAGAGACCGAATGGATGGATGGATGAGCCGTTT
AGCTACTCTGGCCTGGTCGAGTGAGGTTGCGGGTGGGGGGATTGGGGAGGGGCGGGCGCC
ACTCTCACTACCTGTTCTCTTGTCAGCCACTAACGATGGGGGTCATCTCGGAGGTTGCCC
TTGGGATCTTTTTCTTCAGTGTAAGTGTATGCCAGTCTTGCAGCGGCGTTTGGGGTTTGT
TTGGTTCGCGTAGAAAACTTGGTGGGATTGCATGGAAGTTGGTAGATATATAGAAAACAA
AACGAAATATTTCATTTTTTTCCCACATGTTTAGAAATATGCGGGCGCGTTTGGTAGGCT
GCATCAAAGCCCAACCAACCTCTCACGGGCTAAGTACTGAGTTGTTTGGTTGCATGGCTT
GCATTTAAAAGATCCACAATGGAACCCTTCAAATGATCCCTCGTACGTCCGCGGACGCAC
CTGATCAGTGAACGGACAGAAGAGAGAAAGATAAAAAAGTGATCCAATCGAACCCATCAT
ATCGTCCCTATATGTCCGGATTGTCCGCGAACCCTGATATCCATATCAAATATGTAGAGG
ATATGAAAGCTCGCAAACGCGTTCCCGGTCAGTTCACCACATAGGATGCGATCCCATCTC
CGAACACCTTTTCTTTTCTTTATTCATTCTTTTCTTTTTCTCTCTTCCTCTCCACTAACC
ACATGCAAGTGACCGGACATATGGGGAAGAAATTGAGGTATGTGGCTGCGCGGAGATAAA
AAAGGGGACACGTCCGGTCATTGACCGGCGCGTCCACGGGCGTTTAAGGATTTGAATTTA
CAAGTCGTGGTTGAAGATGCTCTTAGAAACTAGTTTGCAAGAAGCTTAAAGCGCTTTCAG
TCAAGTTCATCAGAAACGCCGTTTGATAAAAGATCTTAGAGTGTTTAAGGTTGGACCAGG
AGGGTCTCTTAGGCCTTCTTTTTTCTGCCCACAGGAGTTATTTTCCATTCTCTTTTATTT
TGCGGTGACTAGCTTGCACAATGTTAAAGGCACCTCAAAACTTGGCTTTAGAGAAACACT
CAAATCGACCATTGCTCCTCAAGTACACACAAAACACTAATGAATTTTTTTCCGCGACGC
CATCGCAACCAAATGCAACACATGCAAATGTATCAAACTCAACATACTTTTCTATGTATT
CTTTTCTCCACTGTTTGGTAACTGTCGTGGTTATCAGTGGCAATAAGTCTAGAGGTGTGT
ATGAATAGGCGTTGTATCTATCGAAGGATGAATATGGAGTATGTGTTGGAAATATGTCCT
AGAGGCAATAATATATATATTGAATAAAAGGGGTTCCCCCTGCTCTATTTTATTGAAGCA
TCGAACCAGATAGTTTTTACAGCCCAAACATTCAGCCAGAACATCTCAACCTCGCAAACT
ACCAGACGACTAACCATCGAAAGCAGGAAAATATTCAGCTACAGCAGCTAGCACAGTATA
TTACAGACGCAAATATATCGTAGTTCCAGGACTAGTCCTACAACCAAGCGATGCGCAACA
ATTCTCCCTTGAACTTGTCCAGCTTAGCGGCGAACTGACGAAGGAGCTCCTCCTGTGTGG
CGTGGCAGAGCACATCCCATTATCGAAGAAAAGCTCGAAGTTTCACAAGGACGCATGCTA
GACTTCTCCAAGAACGACCCTGGAAACAAAAGTCATTTCTCAGTCTCCACATGCTCCACA
AGGAAGCCGCAACAATCATATTTTGCACAGGCATTTTCTTATGTAGTTGCCATAAGACAC
AAACGTCTTTAAAACAGGAAATATCATAATCTGGAAATGAAATAGAGAAAAGTTTCCAAA
GACATCTAGCCACCACACAATCAAAGAATAGATGTTGCATCGATTCCATTTCTTTACAGA
ACAGACAAGTAGGATCACTGACAGTCCTACGCTTCGCTAAATTGTCCCTCGTCAGGACCT
TGTTATACACACACAACCAGAGAAACACATGAATCTTTTGAGGGCAAAGAATTTTCCACA
ATTTTTCCCCAATGGTAGAAACCACTCCCCCAAAATTGATAGTATGATAAAATGATTTAA
CCGAGTATACCCCATTTTTTTCTAACATCCAGATTGGGGTATCTGGAGCCTGTGTTAAGT
GGACAGCTTGAACAATCTCAAGAAGCTGATTCCATCTAATTAACCCCTTATAGTCAAACA
CATCTCCTAAAAGAAAGTTTGAGATTAACACCATGCCATACTTGTGAGATGGTGCATTCA
GACTGGTTACAAATGGAAAACAGATCCCAAAACTGAACTTTGAGGGAAGAATCCCCAAAA
CATATGTCATGCCAAAATTTGATGCTCTCCCATTACCAACATCCCGTTTATAAAAATTTC
TTGAGGCATTTAATGCCCAAGTTACACTCTTCCAAAAGGAGAAGCCATTGTCAGTTTTAG
CCCAAAAGATATTGGGGGAAACAATGTTATACTTGAAGGAAATAACTTCTTTCCAATCTT
TAGGTTGTGGATCAGACAACCTTCTCCCCTAGGAAGCTAGGAGGGCCATATTAAATTCTA
AGTTGGGAACACCCATGCCCCCAAAAGCCTTCTTCCTGGTGATCAGGCCCCAATTAGCCA
AATTATATTTGTGTTGGTCACCTACATTCCCCCAGAAGAAATGGTCCACCTGGGAATTAA
TAGCATCTATCGCCCATTTAGGGTACCTAATCACAGCCATAAGGTAGGAAGGGATACTGA
CTATACAAGCGCAAAGCAGTATTAATTTACCTCTGTAAGATAGATGCTGACCCAGCCAAC
CAGAAATACAACTAATAATCCTATCAATGATAGGTTGCAGATCCTCTCTACGCAATTTAT
CAAAATGAAGGGGACCCCCAAGTATTTGATGGGAAAAGAACCAATCTTGCAACTAAAAAT
CTAGGCAAAAGATTTAGCAACCTCTTCCTCAATATTAATGGTAAGAAGGTCACTCTTATG
AAAGTTAATCTTCATCCCAGACAGGTTTTCAAAACAAGACATAATCCATTTGAAATTTCC
GACTTTGTCTTTGGAGTTAGCCAAAAAAAGGAGAGTGTCATCAGCATACTGTAAACTGAC
AATCCCTCCATTAACCACATGAGGCAGAAGCCCCAAAATAAAATTTCGTTGAGCAACTTT
AGACAACATTTTGGAAAACACATCAGCAACTAGGTTGAAAAGAAGAGGAGAAATGGGATC
CCCTTGTTTGAGACCCTTAACACCCACAAAATAGGGCCGAGTCATATCATTGATTCAGAC
ACTGAATGTACTGTTAAGAATTACACTCTTAATCCAAGAAATCCACCTGGTCCCAAACCC
CTAGATCTGAGCATGTCAAAAAGAAATTCCCAACTCAACCTATCATAGGCTTTCTCATAA
TCTAGTTTGAGCACAAGCCCTTGAGTTTTGGATCTCTTAATCTCATGGATAACTTCATGG
GCCAACAGCACACTCTCCAGAATAAATCTACCCTTAATAAAAGCAGTTTGGTTTGAGGAG
ATCAGTCTATCCCCAATAGGGGATAGTCTGGTGGTCATGGCCTTAGTAAGGATCTTAACT
GCACAGTTCCCCAGACTAATAGGTATGAACTTCTTC