| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1562199
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11943 |
4 |
2859 bp |
MLOC_11943.1 |
Available |
Available |
LOC_Os01g56580.2, FRAME:-2, EVALUE:0.0, 13101.m05994 protein CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed |
CDS Structure of MLOC_11943
Contig Sequence (8491 bp)
>contig_1562199 8491 assembly3_WGSMorex_rbca.fasta
CATGACTTGGTTTCGAGATCTTATGGGTTTTAACTCTAGCCTACCCCCAACTTGTTTGGG
ACTGAAAGGNTTGGTTGTTGTTGTTGTTGTTTGGTTCCTATACTTAATATTTCAAAGGAA
GGCATCAGCTCATATTTAATAGGAAAAAATCTACCCTGCGAACAAAATTGACATCACCTT
CACTGTAGAATTTGAGACACATGCCATCTCATTTCATATAACTGTCCTACCCCACGGAAA
TGCAATGAACCGAAGAAAAGCATTCCAGTTCTTTTAGTTATGGCCAACGAAATGCGTAAA
ATGGAATTCCTTCAAATGTCCCTCTTTGGAGCTTTACATCTTGCTCGTGCAGAAGCAACA
ATGAGATGGGTGATGAGGGGAAGTATCAGGTGATCCAAACACTAACATGTTCCACAAATT
AAGTGTGTCAAACAATCCTAATTTTTCCACACTTAATGGAATTCAAAAAGTCACAAGTGC
AATGAGCTCACGAAAAAATGGAATTGATACGCTGAGTTCATTAGTTCACCTCACATAATA
ACTTAGACACTTCCGGTCTATCTGGGAATATGGAACTTGTTTCCACTTACAAAATGAAGG
ACATGATAGGAGCTATATACACAACGGGCTCTCACAGGTTATAGGCCTCCAAAGAGGCGA
ACGGCGTCATTCATACTCTGTAAAGCAGCAGCTGGACCGAAGCAACACCAGCCGGATCAC
GCATCCTCTTCCATCTGCTTATTGGCTAGCTGTGGTCCACATTCATCCCAGTTCTTCTGG
AGTGCCCCTACTCTGGCCATGATGTAAGGTTCATCTACGCAATTTACCTACACATACAGA
GTAACACAGCAGCAGCTAAATTGGCTGGGTTTTCCGACGTCAACACGTTTTAATATGCTC
AGCCCTCACTGAGTTGGTGTGGATGCAAGTCTCACGACACCGTCCGCCCATAGCATATAG
AGGCAATGTAAAGATTCTTGGCCCATTTCTCCTACAAAAGGATATGACTATTAGTGCTGT
GACTGAGTTGGGGTTGGGAGGGGGAAATAGCTCTGTAGCAACAACAAACAGTACAGAATA
ATAAATCCTGGTTGAAGTGAATTATGATGAGAAAAGGGGGTATCAGAACAGTTATGGTTC
AACTACTGCCCTGTCCACAAACATGCAATTGCAAGTGCACATCAAAACAGAACCAGATGA
CAGCTATTAACTTCTCATAGTCCAGAACTCGTCATGTTAGTAATGAAAATGCACTAAGAA
CAAATGATATGGTCCTACCTTCACATGGTTGCTTGGGAAAGCCGATGTTCTGAGAGTTTC
TTGTGTCTCGTCCATCAATTTTCTTTTGGGAATGCTCAATATAAAAGCAGCTTGATCACC
AGTGGCTGCTGTAGAAGTTATTCTATATCCATTCTCCCATCGTCGGTGGATCCCTTCACT
GGGATAAAGAAAATCCAATTCTACTACCTGCATTATATAACAGAGGAATGAAGTGGCAAT
AATTTGATTTCGAACAACAGGCCTTGGTTTCGCCTGCTCTTTTACAAGCCCATTGTATAA
TTCACATTTAACTCGTGTACAATTTTTTAATCAATTGTCACAATACCTGTTCAGAATATC
CAGAGTTCCTTGACATAACTACACCCCAGCGGGTCCCTGCTGTAGTCATTGATGTAACAT
GAAATCCTTCTTTCCATTTCTTGTTGATCCACTTGAAGGGGAACGATTCACTGACTTTGT
AAGACTGTTGAGTGTAAGGGGTTCCTGGAAAGAGTAAACGACCAGGCTCGATTAACCCCG
TTCATGCCAAATATCAGCAACAAGGAAAAATTAAAAAGGGAAACAGGGAATCCAATACAT
GGACAAAACAGTCAGCTCTACCATTGATTGGAAACGCTAGCACAGTTTTGGGAAGCACAA
GCAGGACAAATACTTGAATATTGATGTTTCTCAATAAATATAACAAACATCCATTTGTGT
TATTTCTTTATTTTGTTTGTTTTATTCGCCAATAAATGACAACTGTTTGGCAAAACAATA
AATTGAACAGACCTTTTTTTTCGAGAAACACAAAAGACTCTTTGCGTTTCATTTCATTGA
AAAGATGGAAAGTACAATCCTCCTAAGAGACTGGTTATACATGACCACCAATAAATTGAA
CAAACCTTTTGACATGACAACCAAGGAACTTCCGTTTGTTGCTCCTGCTATGGCACTGAT
GTAGTAGTTATTTTCCCACTGCTCCATAATCCAGTCCTAGAGAACAATAAATAGGAAACT
TAGGAGCCCGAAATAAGAAAGCAGAATGCTCAAGAGTCAGTAATATACCTTATGAAGGAA
TATTGGTGAAAGTTCGTAAACTTGGGATGTGAACCCGGTTCCAGCATCCATAATAAGGGC
CCAGAGATTTGCTGAAGATGCTACCGAACTAATAAACAATCCATCTTCATTCCCTTTCTC
TATGTGTTGATGAAGTCGGGCTTCTGCTACATTGTAATGATACCTGAGACGGAGAAAAAC
AGGGACGTTACCAGAAGGTGGCAATTTGAAAACCATGGTTGTGACTAAATAAGTAGCTGG
GATAAATATAATGTGCTTATGTGCTTGATTTCTATTACTTGTTCAAAACGGCAAATCACA
AATGATATTCACATGATTTTCTGGTACATCAGAAACATCAACAGTGTTCAGGAGAAATTC
TTAGTAGCGCACTTGTGCAAATGTAGCATCCAGCAAACCTTGACACAAAGCACACAAACA
ACTCACAAAAATCTTGTCTGAAATAACTACAAGCTTGCCAAGAAGTTAAGTACCCTATGC
ATCACGTGCCCCTACTTTGAAGTCGGAACTATTTACAAACAAATTTTAGGCTATCTATCA
CACAAAAAATGCTAAAAAGGTAGAGCAGATTGTGGCAACTGGCAAGTGAAGATTCATAAC
ATGTGCAACCTACAAAGCCATGATATATTGTGTTACCTCTGTTTCATGGGCCTCTTAGCA
TTATATACTGAAATCCACTGATTTGCGGGGCTTCCCAGTCGAACTTTCTTCCTCGGTTGT
TCATCTTCTTCATGACTTACTCTTCCTCGTTTTTGTCCAGCCTACAATGAAAAATAACCA
AAGGTCAAATTAAACAAGCTCATTCTATAAATGAGTAATGCACCAGACGAGTATGAAATC
AGATCTATAAAAAACAACCTTTAGAGCACCATCAATTCTAATAGGCCTCAAATGCTGGGG
CTCAATCAATTCATCAAAGAGGGAAATAAGCTTCGGGTAGTTTGGTTCTTCATCGAATTT
CATGTTTGTCACGGTTTCCAGAAAAAGTTTAAAAGGAGGTGCGCAGTAACAGCACATCAG
ATCTGGAGAGATAGACATTTTCTTCTTGCAAACAAGAAAGCTCTTGTTGTCCCCCTGCAC
ATCATTTAGCAAAGGTCAAATACATCTTGCTCACGTTATGTGTACATAGATAGGTAGAGA
GAGAGAGAGAGAGAGAGAGAGAATCATAATGAGTGGCTGTGTATTCTATCCACAATCTCA
ATTACATAATAACAGATTAATTTCACTTCACCCAACATGCATGTAAGGGGGCAGAATACA
TAGTCCACTGAGATATGATCCAAACTCATCAGCACGACCAGAAGCTATAGTAACGAATTA
TGAGTTTCTATCCAAAGAAAAAAAAAGAAACCTGATAGCCCTGCCAAGGTAACCTTCCTC
TGAGTAGAAATATCAATGTGTATGCTAGTGATTCCAGATCATCCCTTCTGCTACCAGTGC
GGCCCAAATGGGCATGCACACTAGCATATCTTATTGTGCCCCTGTCCAAAAGAAGGTAAA
CAATTGGTTGATCTCAAAACTGATTGGAAATGAAAAATAATTGATCCTTAGATAAAAACA
AACCTAAAAATATCAGGCCTCTGATCGTAGTCAACATGTTGCCCAGACGATGTTTCCTTC
CATTTCGATGCTGACAGTGCAAATGGTAGGAGTGAGTACTTCTCTATATGATATTAGGTA
TTACCTCCGTCCCAAATTACTTGTCTTGATTTTTCTAGATACAGATGTATCCAACACTAA
AACATGTCTGGATGCATCCCTATCTAGACAATTCTAAGACAAGTAACTCAGACGGAAGGA
GTATTCAATACAGTTAAGGCAGAGAATACTTATGTGTTGTGTGTAAAAAATTACTCAACT
CTTGGCAAAGAATAATGAATTAGCTATCACAAGAAATTTGCCACGACATACCCAACCCAA
GGTCAATCAGAAAAAGCTTCTTCTCATCAGGTGATCCAGGTTGGCCAAGTAGAAAATTCT
CTGGCTTAACATCTCCATGAACAAACCTGCAAAATATTTCGGTAAAAATATATAAAGCTG
GAAAGCTGCATCTCAAAGCCAATTTAGTAAGACATTGGTTACCCCTTTGCATGAAGTTTC
TCAAGGATAGATATAGCCTCTACAGCGATGCAAGCAACCATACTTATAGTCATTCTGATC
CAAACATTAGTTATCACTCAGCTGTTCTAATTTAAAAACAGATAAGACAGAAACAGAAAG
CAAATAGGTGCATCCATCTTACGTTTGCCCTAAAGAATTCCAAACATCCCAAAGGCTAGG
GCCTAGTATATCCATTACCTGAAACAGCAATATAATTCAGCTCGTGGTAACAACAGAACT
TTCTCGAATGGATTAGATAACATTTATACAACTAACCAGCACATAATAGTCCCCTTGACG
GCCTTTGTAGTGAACCCACGGTATACCATAACATCCGTTCAGAGAGCTTAAACAAATGCA
CAACAAAACATCAGAATTAGTGGGGAAGTAGTTTGGTGGAGCAAATAATAAGACTGGTTC
TCCTCAGTTGTGAACAGCAACAAGAAGACAACCTTCTTTATATTTCAAGAATACTGCAAA
ATCAATTTTAAGAACTACAAATGAAAGCAAGTTTTAGGTTTGTCCTAAGTCAACTTCTTT
AAGTCTGACAAAGTTTGTAGAAAAAAATACTAATATCTACATAGTATGAAAACATATTTT
ATATGAAACTAATTTGGTGTTGTACATGTTGATAGATTTTTACATAGACTTAGTCAAACC
TAGAGAAGTTTGACTTGGGACAAATCTAGAACTTGAAATATTTTGAAACAGAGGGGGTAT
AATGTAATTACCTATAAACTTGCCACTCATATGGAGGGCCATAATTGCACCCCTTACTGT
TGCGGTGCTCAAATTTCAAAGCAACCTGCAATGAGAGAAGACAACGCTCTTACCATCATA
TTATATTCGAATAGCAAATTTTGAAGACAAAAGGAAAAGCAATAAAGAAAAACCTCATAA
GCATCTGGTCCAGTTCGCTCCGTTCCACCAGAAACTCTTCTGCCAACATAAACCTGCCCA
AAACCACCCTTGCCCAATTTCCGCTCTACCTTATACTGTGGAGAATGGCCTACTTGAACC
TGCAAAAGGTAAGAAAATAAATATACATATTCCACTGGATGACTAACTTTATATTCATGT
ATACTTGGTTCGCATCATGTCACTTGCATTTCAAATTACCACTACCCACAAGAATTATCG
GTTCATTTAAATTGCTGACATGTACTACACAAAGAAAATTTCACGAGCTTTAGGGTATGT
TTGGTTTTAGCAGTTTGCCCTACCAAATACCTGGCTAGCCAGAATTTTGGTCAACCTATT
CCTTGCCTGTGATTTGGCCAGCATTGCAAGCAAAATGAACTAGGCACTGTCAAGCCAAAA
TATTTTCAATATCCAAAGGAACACCAAAGTTTTGGTCCAAAAAAATGGTAAGGTAGGCAC
TGGCTGCCATCCAAACATACCCTTCCAGGCATCCAATGATAATTTTCTCTTGTTATAAAT
GAAACAGATGGAGTATCATTCAGAAGAAACCCCAGAAAACAGAATTGCAGGCTGATGCAC
CTACCCTGACAGCAGGGCACTTCGTTGCCAAAATTAATCACCTCCACCATCGTATTTAGG
GCCCAACCCCCAATTTCATTTTTCCGGGATTTTTAGGCCTAATGTCCCAAGCACTATTAC
TGCTCCCTCTTTCATGGCGCACATTCCCTCTTATCCCCCCTTCATATGGAATGTGTAATT
AATGTTTTGCATGCAGACTTCGGCAATCCTTGATTTTCATTGGGCATGCAAGGTAGAAAA
GGAAGGAGAGAAAAATCTCATGCAAGGAATGCCCAACGTGCACCCTGGTATTAGCGCAAA
GAATTAACACAGAGGGAGACGAGCAGCTTAGCGCATTAATCAGACGCTTCGCACGAGGTG
CTCACAGTGCCCAGAACAATCTGCCGAGGGAAACTGAAGGAATCACTTGGTCAAATTCTA
ATCCCTATAACTGCTCCAACTTTGCTATACATTGGTAGCGAGATTTGAAAAGTTGGCCCC
AGATAAACGGGTGGAGGGAGCAAACCATGTGTCCCCGATTGGATCCAATTAACTACTATT
ATTTCCTACTATTAAGGTATCTGATATTAAGGGAGAGAACTCTTCTAACATGAAAAAGAT
ACCCATCATTTCTAGTACATGGTGTTCTCAAGGAAAAAAATTAATTAATTCATATGTGGT
TTTCTCTTCCTCCACGTGGATCAGCACGCTTTCGATGCAATTTAGAAACAGATATAACCA
GAGCTAAGAAATGCAAGTATCAATATCAGCATACAATTTGCTGGTTCTCATGGAGCAATA
GAAAGATTACAAGTAATGCCAACATAAGTGTGAGGACAAGGACAATTTTGATTTTTTTTC
AATTACATCTTGTTTTACGGTCTTCACTACCTTATAAATGGGAATGGGCAAGGCGCAGTT
CGTTCACGTCTCCCACCTCCCTTTTCACTTACTTTAAAAATCTCTAACAAAGTATAATAA
GCTAAATAAATGAAACACCGTGAAGCATGACATAAAGCAGGGAGGTGTACGCCAGCAAGG
CAGAAGTTGAATGGTGTGGTGGGCGTAGGTGAAGTGTGAAGCAGTCAGTTATATATTCTT
TTAGGTAGCAAAGCAAGTGCATATAGCTAGTTGTTCTACATAATTAAGTTCAAAATTCCA
ACACAAATAGCTCCATATGAGAAGGTGCTTTTGAACTACTCCCTCCGTCCCACAATATAA
GAGTTTTGCAAGCTATGTTAGCTTGCAAAACGCTCTTATACTGCGGGACGGAGGGAGTAA
CATTTATAGGCATAACTTCTTTTTAGGGAAACCATTCATAGACATAACTGATAAAGCTCT
ATTATGATAGCATTTAGCATAGGCCACGTGAAACCGTGACAAAATATAAGATTTGTCGTT
ATCTTCTAAACCATGACACCACAAGGAGAGCAGCAAATCAAAACACACAAAATAGTATGA
GCCATAGTGCATTTGAACAAATACCTTCTCTGGGACTGGAGATGCATCATCTTCACCACC
ACCGATCTTCTCAGGACTCACGCCATCCATCTTCACAACCTTATCAGCAAATTCCTCGAT
GCGCTGTGGACCACCCACAGCACCTCCACCAACAGCAGCTCCAGGAAGAACACCAAAAGG
CTGGTCTGGATCCAAGTCAATCACAGGAACACCTCTCCCTCTTCCTCCTGCCCTTCCCCT
CCCTGATCCTCGGCCTCCACCTCTCCCACCCCTTCCTCTTCCGCGTCTTCCTGCCACCGT
AGGCGCTGTCACTGCCAAGTTCTCTGCCGGGTCCTGTACGTCGGGATCCTCAGCCTTCCT
CGACTTCAACCGAGATTGTCGAACTCCACTACGCAACTCTGGCATCCTTTCTCCCCATGC
ACTTCCTACCACATACTAATCTGCCACTCGAAATCAACAACAGCATGGGTTAGCACAAAC
ATACTACATTCTACCAGCGAGCAATCAAACACAACTTACTGCTTAAAACATGAAATCCCA
CATCCAGGATAAAAAATATTTATCAAGCCTGTAGAAAAACGGTTCTCCTTTCTACTACTC
CATAGCCACCCAAAACAGCTGCACAAGGTCACGGCCCTTGTTTCTTCCCCGGCCGCAAAT
CTAACACCACGAACTACGACATAGATTCGGCCACCAATGTTCCAAAACAGTACTCATCCC
CAAATCCTATCCTGATCTCTTCGACACAGATTTCCCTCACCAGAACCGATCAAAACCTAG
GCGCAACACCCACATACGCGTCGCCGCGTCATCGGGACCCGTCCGATCATCCCGGAAAAC
CGTGGCCCAAGCCAGCCGCCGCCACAGGGACACGCGCAGCAACCCAAATTTGCGCCACGG
AAACAGGGAGATCGGCGGGCGCGGGAACGACCCCCGCGCGATCGGACGCGATGGACTGGA
AGATCGGACTCCCAGGAGGCGATCGCCCGCGGCCGCGGCCGCCGCCGCCCCCGCCACGGG
GGGCCCACCCCGGACCCACCCGCGCCGGGCCGCCCGGGCGGCGGGCGGGAGGGGGGGGGG
NNGGGGGGGCGGGGTGCGGGGGGGCGGGGGG
