Map Locations of contig_1562180 (3771 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1562180

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11927 3 1716 bp MLOC_11927.1 Available Available LOC_Os04g43650.2, FRAME:-1, EVALUE:0.0, 13104.m04339 protein L-allo-threonine aldolase, putative, expressed





CDS Structure of MLOC_11927






Contig Sequence (3771 bp)

>contig_1562180 3771 assembly3_WGSMorex_rbca.fasta
GCTGACTTGTGTGTTTTTCGAGCTTCTGTATTCTAACCCTCGAGGCACCTGGTTTGTAAT
ATGAAGCTTGTCTGTTTTTATTTGTGTCTAGAGTTGTGTTGTTATATCTTTCCGTAAGTT
CTTGAGCTTGGTCGTACGCATTTACGTGTATGATTAGCGTATGATCAAATCGGGTACACT
TTTTTTCCAGGAAAGTTAGAGTACACTTCTTTGACAAGTGATGGGCCGGCCTGGCAAATA
TATCCATCCGGGCATGCACAAACACAAAGTTCAGTGTGGGGGGACTTCCATCGGCCCAAA
GAGCAACATATTATTCTGCAAAGTTGTTACTACTACAAAGGGCCAAGGCCACAAACAAGC
TAGATACTGCCCTTCTTCATAGGTGGGCGCAGAAGGAAGTGGCCTAGTGCCCATATGAGT
TCGTGGTACTGCCGTTTGTCAAGTGCTCGAACTTTGCATTGCCTGACAGTATTTCCTCCA
CAGCTTTCTGAAAACAGAGCAACAAATCAGTGATATCCACACACCAACCAGAGAGCGTCG
CTGATAGAAGTTCAAAGGAATCCATGGTAAGACCGTTGTACCTCGATACATGTCAAAATA
TACTGGACGTCACTATCTGAAATTTGGTAGTGAATGACAAGTCTGACGCTGCAAATTAAG
GGAGTTCAAAATGGAGAAGTTAGTATGAAGCATACATCATACTACATATGAAATAAGGCC
GAGTTTCGTTTCGATGCAGTCTGAAGTTCTAGAGAGGCCAATACATACAGGCATACGATG
ATTAGACTGAGCAGCTGAGCTTGATAATACTAATAAGCAGATAAAAGAAATGCAGTTGAG
CAAACTGAATTGAACCTCTTGGAGGTTCCTGGCATCGCAAGCACATTGCGCCGTTCCAGG
AGTTGACACAGTTTGTCAGATGTTATGCGTGGATCCGCGATATCGAAGAATACCTAGAGA
ATACACCACGGGAGTTTATGAGTATGACCTTCAAAGGCGACATATATTGGAAAATATCAG
ACTCAATTGATTGACTGGCAGGCTAACCATATTGGTCTCCACTGAAGTTAAATCAACTGT
AAACTGTTTAATTTTCTTCAGCCCATCTGAACAATTGGACAAGGCAAGCAAATTCAGGGT
TGTATGCCTTGTGATATAATTGGAAGAAGTGTGAATCCACAAGGAAAAGATCATATGAAA
CCTGCTAATACTTTAGCCTTCCTGTGGTCATCGGCAAGCTTGCCTACGTTGTCGCGAACT
GCAACATAGGCAGCAGCACATAGAACTCCTACCTGCCTCATTCCACCACCTAGTGTCTTC
CTCAGTATCCTAGCCTGAAAGTATTCTTCAGATTTCCGTTACATGTTCTCTTATAAGCAG
CTTAAACTTAGTAGTAGCAGAGTATCCATCGTCACCTGGTCTATGAAGGCCTTAGAACCA
ACAATAACCGATCCAACAGGAGCACCCAAACCTTTCGATAGGCATACCGAAACTGAGTCG
GCAGCTCTCACAAGCCTGTCAACAGGAACCCCAAGTGCCTGACACGACAACAGAACAGTG
ATGGAAAATGTCAGGAGAAGATATGAATACTTGGTACTTACTCATGCCGGTTTACTCGAT
CGCATACTACTTACCACGGACGCGTTAAAAATACGAGCTCCGTCGATATGAAGCTTTAAG
CCATGGCTTTGAGCAACTTCACCAACCTTGTCGATGTATTCAGCTGACAGACACTTTCCA
CCAGATCTGCAGCAGCAACAATAAGAAGTGAAATATATATCAACCAGGTAAGCACTACCA
TCCCGGCCAGTAGCATCAGCAAAATGTATGAGAGCAACTCACTCACCTTCCATGCGTGTT
CTCCAGGCAGATGAGCCTGGTGGTGGGATAATGCAGAGCCCCCGCCCCGACCCGATGCCT
AATCGCAGCAACGATCCTGTCAATGTCCATGGTGCCGTCGGGATTGTTAACAACGGGCAT
GGAGTGGACGCCGCCGATGGTGGAGATGCCTCCGTTCTCGCACATGTGGATGTGGGAGCT
GTCCCCGAGGATGACCTCGCTGCCCCTGGTGTCGCAGTGCGTGAGGACGGAGACGAGGTT
GCCCATGGTGCCCGACGGCACGAACAGGGCGGCCTCCTTGCCCGTGATCCTGGCCATCTC
CGCCTCGAAGCGCTGCGCGGTCGGGTCCGCGCCCAGGACGTCGTCGTCCACCTCCGCCGC
GGCCATGGCGGCACGCATGGCCTCGGATGGCTTGGTGACCGTGTCCGAGCGGAGGTCCAC
CACCTTGGTCACCATCCTGCCTGCGTAGCCCGAGCTCACGCTTCAGCAGGAACACGTAGT
GCTCTGCTAGCAGGTGCTTTTTACCTTGGAGGACAAATGCATTAATGCGAAATCTACATC
TTGCGGTGGAATGGAAACTGGCCAACTAAAATGAGTAAACTAGCAGAATTCTTTCGTGAA
GGCGTTGCAAGCTGTCATTTTTTACATCGCAATGGGTGAAAACTGAAACGAGGAAAGCCA
AATAGGAGAAGTCATATCGCAGAGGACAAGATCACAATAGTGCCTTACCACAGTCGGTGG
AGGACCCCAGGAAGGATACATACAACTCTACTGGTCCAACAACCGCAAACTTTAGCGCCT
TTTGGGGGGCCATGCATGCATGGCACGCACTTCCTCGGAGCATTTAGAAAAGTGGCGAAA
GGATAAGCACTCGGCGGCTCCAAGAGCAATGGATCCAAGAACAATGGATCGATGGAGGGT
TGGAAGGGGAGGGGCAAATTAACATGGCACAACACACGTTTTATTGCAATCTAAACGTAG
TACATACATGGTATACGAAACAAGGACGGGAAGAGACGAGGGCGCGCGTTCATCATATCG
ATTCGTAATGCAATAAAACTTTGTAAAAGAAGATGAAGAGGGGGATCTGAGGAACTGCGC
ACCAGAATCCGTGGATCAGATGGAGCCCCAGCCGAGGCGAATGGGAATGGGGGGCGCGGG
TTGGGCCAGCGAAGATGAGTGGAGTGGAGAGAGACTTCGGTGGCGTCGCTGCCACTGCGG
TGCGGGCTCGCGCTTTATAGAGGAGGAAGTGCTGGACGAGACGACATAGCACCATCCCAA
TATAGTTCCAAAAAAGGCCCCCCCAATGCCAATAACCCTTTAGTTTCTTCCCCGGCCAAA
TAATATTATTTCAGGCATCTCTAACGGTAATCCGTAAATTTTCTTACACGTCCGTTCACG
GACAAATGGATCAGTCCACTGACACGAATACGGGATCAGTCCACTGACACGAATACGGGA
CGACGACATTCAACGCTAGCCGCATACATTTTGACGACAACTCGAACTAATCGGACGAAA
TTCATGCAAACATGGCCGGATTTCATACAAACACGACGGATTTTATTACATTTTGAACAC
ATTTGGGATAGCCTAAAGATGAAACCCATAAAATCTTGAAATCAACTCATGATTCTCGCA
TGTGGATAGCTAATTTTCCTGCACCTATGTCAATGGCTAGTTCTTTCGTGATATTCGAGT
CCTTCTGATCTCTCTCTTTCTCTCTCTTTACGAACTCCTTACATGTCAAGTTTAGTCTAT
CGTGATCTCTCGTTTTTTAAGGAGGAACATCCTTGGCCTCTTCATCTGGACGATGCATGA
AATTATTTATTAATTATTCACAAAGACCTTACAAAGCAATACATCGGTAAGTATGAAGCC
ACCATCTTAGCAACATTTGTCACTACTCCTATCTGTTGGGGAACGTCGCAT