Contig Data
morexGenes
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Map Locations of contig_1562137 (5436 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1562137

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11916 4 1659 bp MLOC_11916.3 Available Available LOC_Os04g32540.1, FRAME:+1, EVALUE:0.0, 13104.m03116 protein OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed





CDS Structure of MLOC_11916






Contig Sequence (5436 bp)

>contig_1562137 5436 assembly3_WGSMorex_rbca.fasta
CTCTCTCTCTCTTTCTCTCTCTCGAGCTCAGGCAACAACATGCACCCGGACACCTCCGTT
GCCGCGGTGGTTTGTGCAGCTGCTGTGCTGCTCATCATCAATGGCTGCCTCTCCATGGCC
ATGGTGGAGGACAAGATCACGGTGCTGCCGGGGCAGCCACCGGTGAGCTTCGCGCAGTAC
TCCGGATACGTGGAGGTGGACGCCGTGAGGAAGAGGTCGCTCTTCTACTACTTCGCCGAG
GCAGAGCTAGATCCGGCCACCAAGCCCCTCGTCCTCTGGTTAAATGGAGGTAAATTTAGT
GGCTGCCACAAGCTTCCCACTGTTTCATCTTATTGCATTATTGGTATTGAGGAGATCACA
CGAGGAAGAACAGTGTGAGTAGGCCAGAGCCAGAGGGTAAAGAAAATTAACAAATGTTGA
GAGAGAGAGTAGATTTTTCTGTGCTAATGCGCCTGCAGCCAAGGACTTTTACTTGGATCA
TACATCGAAAAGATAACTTTTCCTAATTGGATTCTTGAAAGAAGATATATACTAAGTGTC
CCAACTGTTGATGGAAGGGGACTTTTTACGTTTTAAATTTTGATGTTCTTGTTGTAGAAT
GTGTTTTTGTTAGGATTGACTGCATAATATCGTGAAATGGTATTAATGCTGGGGGGATCT
CGCCTTATTTATTACCAAGATTCCTTTGTCTCTTTGTCGTAGGGGTTCTGATGATGTCTA
TGCATGTGTGCTTTGTGTAGGACCCGGATGTTCATCTGTGGGGGTGGGAGCATTTTCAGA
GAATGGGCCATTCAGGCCCAGTGGCAATGCCCTTGTGAGCAATGAGTATAGCTGGAACAA
AGGTGGGCATTTTGTCTCTTGTAAAAGTTGCATCCACAAAAGCAGCCTCTAGGTGCCTTT
GATTCGTCCTCTTTTTTGTTGGTCCTATTTTCGTTGGTGCAAGAAAAAAGAAAGCTCACA
GGAATTTTTACCACAATTGAATTGCTCTTCTTGATATCTGTTGCCTTGTTTCAGAAGCCA
ACATGCTCTATCTGGAGAGCCCTGCAGGGGTGGGCTTCTCCTACTCCACTGATCCTTCCT
TCTATGGGGGTGTTGGTGACAGCATGACAGGTGTGATCTCCATGCTTCAAAAATTTTGTA
CTCCGTGTCATTATTATTTTCTGTGTAGGATTAACCTTCAAGGTTATTCCTTTTTGAGGG
GTTAAAATATGTTGGCCCTAAATTTTGAAGCCAGGGACAATCTAAGATTCTTGGAAGGCT
GGTTTGCCAAGTTCCCACAGTACAAGGGCAGGGACTTGTACGTCGCAGGAGAGAGCTATG
CTGGTAGAGCCATTCTTCTTGTTCACCTTGTTGGTCCATTCTGAATTCATCCCTTCATGT
TTTCTAACTACAATGATGATCACTTTTAAGGTCACTATGTTCCGCAACTAGGGCAGCGCA
TGGTTGAATTCAACGACAAGGAGAAGCTGTTCAATCTCAAAGGCATTGCTGTAAGTATTC
CATTTACAAATCTTACAAAGATATGTTTACGAAAGGAAGCCTCCTCAATTTATAGTGTAT
AAACTTGCTCTCTTTTTCCCTCGTTGATCCAACAGTTGGGCAATCCTGTTCTCGAATTCT
CGACTGACTTCAACTCGAGAGCCGAGTTCTTCTGGTCACATGGGCTGATATCGGATTCAA
CTTACAACGTCTTCACGACGGTTTGCAACTATTCACGGTATGTGAGCGAGTATTACCACG
GCTCCATCAGCTCGGTTTGCGACAGGGTGATGAGCCAAGTGACCAGAGAAACTAGCAGAT
TTGTCGATAAGTACGATGTCACCCTGGACGTCTGCATTTCCTCAGTTTTGATGCAGTCCC
AAATCCTCACCCCACACTCAAAGGTATCGTTTTTCAGCATTATCTCTGCTATTATATAAG
GAGATGTAACCGTGTCATACTGTCATTGACGGACAAATTCTTCGCAGTCTACGGATCAAG
TGAACACGGAGCTCGACGTGTGCGTCGAGGATGAGACAATGAACTACCTCAACCGAAAAG
ATGTGCAAAAGGCAATGCACGCTCAGCTCAACGGCGTGCCCAAGTGGACGGTCTGCAGCA
GGTGTGAAGTTGCCTGTCTCATTTGTTAGGGCTTTTATCTGTATCTGCTACATAGTTGCA
TTTCCTTGAGAAAGGTTGTGATTTCACAAAGTGTTTGCTGCCCAATACAGTGTTCTTGAA
TACAAACAGCTGGACCTACAGATCCCGACCATCAACATCGTCGGCGCACTTGTCAAGTCC
GGCATTCCGGTGCTAGTTTACAGGTAAAGAACCGAATATAGTTGTATCAATCAAACTCGC
CACGGCAAGGGTGTCAGTTTAGAACCTGGCCTGATGTCTGTGCTCGTGGGTCTTTGTCCG
CAGCGGTGATCAGGACTCGGTGATCCCCCTGACGGGCAGCAGGACGCTGGTGCACCGCCT
GGCCAAGAGGCTCCGGCTGAACGCAACGGTGCCGTACCGGGTCTGGTTCCAAGGGAAGCA
GGTGAGCTCCGGTCCATCTCCATCCTTGGAGTATAAATGTATAATAGTGGCAGGCCATCG
TTAATTCGTTATGTCAAGCTCAAGCCATGGCTCTGGTGGCGAAACTGAAACTGAAGCGTT
CTTCTCATCTTCTCCGGGATGTGCAGGTTGGTGGATGGACGCAGGTGTTCGGCGACGTTC
TGTCCTTCGCGACCATCCGGGGAGCGTCGCACGAGGCGCCCTTCTCGCAGCCGGAGAGGT
CCCTCGTGCTCTTCAGAGCTTTCCTCGCCAGCCGGCCGCTGCCAGAATCGTTCGAGTGAC
CTCAATTGGAGTACTATCTAGGAGTAGTAGTAGCGTCAATCGTCTTTCAAGGTTGGGAAT
CCAATCAAAAGGTATTCGCAAGTGTAATCAGTTACTCTCTCCGTTCACTATTATTATAAG
ATGTTTTGAATATTTTAATACGAACTATATACAAATTAAAATAAGTTAATAAACACATTA
AAACATGTGTATATATATTTGATTTAAAAAGATACAATAAACCATCTTATAATGATGAAT
GAGAGAGTATATCGCAACTTCGCAAGGCGTGGAGGTGCACTGGAAATGTATGCGAATTCG
GTTGGAGAATCACAGGTGATGTCTGTGTTTTCTTCAGTGCAGAGTACTGAATTTTACTCG
GTTGCTACCTTTGCCGTCATACCGGGAAAAGCACTATGGAAATGAAATTGTACCACACGG
ATTCGCAAAAAAAAAATGAAATTGTACCACACGACTGAAATTTACTGGGAGCATGGTTTG
CTGTGTACAATCAAAATGTCGTATGTGTAGATTCACATTGCCAAGAAGAAAAAATATGCA
GGCCGTGACCGCAACTAAGATGATCTACATTTTGTTTGGAAACTAAGATTATTTGCAGAA
CTAAACACCAAGGGGTATAGGGATTGAATATTTAGAAGTAAAGAATAGATGCCTACTTAG
CAAGTGGTTATACAGACTATCTACTCAGACTAAAAGGATGTGGGTACAAATCTTGAGAAA
TAAATACTTACATTCAAAGATATTGACCCAGGTCACTGCTAGACCTAATGATTCACTTTT
TTGAAAGGGGTTAATGAAGATGAGGGTAACCTTCTTTTAGCGGGTGAGGTTTTTAGTTGC
AATGGTATCACAACCAGATTCTAGGAGGACACGTGGCTTGAGGATACGTCTTTAGCCCTG
CAATACACGTCCTTATATAATATTATATAACGTAAGAAAGATTATATTGTTACAATATTA
CATGCGGTACCTCTTAACATCCAATTCGGACGATCTCTAGTTGGAGAACGTTGGGATTAC
TGGATGCAATTGGTCACACGATTGATGGATGTTCAACTCTGTGACCAGCTCGATATTATT
CACTCGAAATTATCTACGAATGATACTTTTTAGTGAAATCAATGTATATGGATTTAATTG
ACTCTGGTCCTCTTTCGAGATCATTGCATATTTGGAATATTAAAGTGCCGCTAAGAATTA
ACATATTCATGTGTTTTGTACATACGAGAGTTGTACTAATTGATAACTCACAAGTATAGG
GGATCGCGTCAGTCTTCACGGATAGTATTTCACTCTAATTTATTGATTCGACACAATGGG
AGCCAAAACATATTTATTGATTGTAACAGTTGAGTTGTCAATTTAACCGCACGTGGGATA
TCTCTGTGCACCAAGGATTTAGTAGCACAACAAATGATAGTACTACAATAACAAGGATAA
CAACAACAATAGTAGTAACTTAGCAAGATTCAGTACATGTAAAAGCGTAGACACATGGAT
CAGTGATGGATAATGATTTNNNNNNNNNNNNNNNNNTAACAGTTACACACTAGAGTGACA
CAGAACTAACTCCAATTCATCAATATAATGTAGGAATATATTCCGTATATAGTCATACGT
GNNNNNNNNNNNNNNNNNNNNNACATCTTTTGTCCTACCCTACCATGGCAGCGGGTCCTA
TTGGAAACTAAGGGATATTAAGACCTNNNNNNAATAGAGAACCGGAACAGAGCATTAATA
CATAGTGAATATATGAACTCCTCAAACTACGGCAATAACATGAGAGAATCCCAATTATTG
TTGCATTGGGGTATGCGAGTCAAGACACGTAATAGGTAACTACANNTTGCAAGATAGGAT
CCAAATCACTCTGATATTCAAGAAACATAATAGATTCGGATCTGAAATCATGACATTCGG
GCCCTAGTGACAAACATTAAGCATAACAAAGTCATAGTAACATCAATCTTAGAAAATAGT
GGATACTAGGGATCAAGCCCTATCAAACTAAGTAATCATGGCATTTTATTTTTCTTTGAC
TAAGGGAACAGAGAATAAACTTGGGGTACAGAGAGTTGTGAATACTCAATTCATCAATCA
CATGTCTTTCGAAAATGATCCATTAATAAGGTTGATCAAGTCTTATTAACTTTCGTTTTC
GACAAACATGAAACCGAGGAATTTTTGTATATCACTAGGTTACCNNNNNNNNNNNNTGCA
TATCCCCAACAATAAGATTATAATATGTATTTTTCTTGGAAGTAGCTAGAGGGACGGTAA
AATTTCCAATGATGACCGTGGGAATAGGCTCAATGACATTAATATTGTTAAACAAAGTTT
GCTTCTTTAGAAAATGCACAGTATGTTGCTTGACATTAACATGATAAGTGACCTTGTTTT
TGTTGCAATCAATAACAACCCTTGTAGTATTTAGAAAGGGTCTACCGAGGATGATCGACA
TATTGATGTCCTTGGGCATATCGAGAATAACAAAGTCTGTTAAGATAGTAACATTTGCAA
CCACAAGGGGGACATCCTCGCAAATTCCAATACTCCCTCCGTCGCGGTTTAGAAGGCATA
GTTAAACTTGCGTGTGTTTCCAAAATAGACAAGGTT