morexGenes - Barley RNA-seq Database

Contig contig_1562135
Source Contig contig_1562135
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562135 (6925 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1562135

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11914	1	894 bp	MLOC_11914.1	Available	Available	LOC_Os05g38550.2, FRAME:+2, EVALUE:9e-103, 13105.m04045 protein ubiquitin-conjugating enzyme, putative, expressed
CDS Structure of MLOC_11914

Contig Sequence (6925 bp)

>contig_1562135 6925 assembly3_WGSMorex_rbca.fasta
GATCTCGCGAGGAGGAATATGCCTACGAGCAAGAAAGAGAGAGAGAGAGAGATGGGGGAG
GGGATCTCGCGAGGAGGAATATGCCTACCAGCAAGAAAGTTTCACAAGAGTTCTGGATCA
ACACCAGTGCTCGCGATAGTTCGAGGGGTTGAAGCATGTCGCTCAATCGCGTGAACCAAA
CAGTGATAGAGACGATCGACGGGGCGAGTGCGTACATGTGACTGTAACGAATTGTTTTTC
CTAAGGACTCGACAGTACATGGGAAACATGGTTTCTTAAATTTAACGAACTATATAAAAA
AATGATAAGATATACAACATCAAACACATATAGTAGAAAAAATATTTTACAAGGAATTTC
ATGAGACTAATTTGGTGTCCTAAATATCGATATATTTTTCTATAATAATAAACCTGATCA
AATCTTAAACAAGTTTGACTTACATTACAACAAACAAACCCACATCTTCAATTGCTTTGC
CACTCGTACGGCAGATTATTATTGTAACTTGAGCATGACCCATAAAAAGAAGAGTTCGGA
ACAGTAACGATGCGTATCTATAATTAGCCGGGTCGTTGTCGATCACCTGTATCCGCCCGG
CCGAGCTTCGCATATATCATCCGGCCCTGCCTTCCTCCCCTCCCCTCCGCCTCCCGGGAT
TCCCACCCTCCACCTCCAAACGCGCACGCGTCCGTCCACGAATAAAGGCCGAGGGCGGCG
AGCCAGGCCCAATCGCCAAAAACCCTAGCGCCGATCCGATCGAGCTCCGCTTTCCCTTCC
CATGGCGGGCCCCCCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCCGAGGTACGGA
TCCGCCGCCCATCCCCCCTTTTCGTCCCCCGATTCGTCGCGATCGCGCGCTGATCTCCGC
CTCGGCGCTCGTTCTGTGCTGCAGATCTAGCGAAGAACCCCGTGGACGGGTTCTCGGCGG
GGCTGGTGGACGACGGCAACGTGTTTGAGTGGCAGGTCACCATCATCGGCCCGCCCGAAA
CGTTATAGTGAGCCCCGATCTTTTGCCCCTGTATAATTCTGATCACCGCGAGATTGCGCC
ATGTTATGCATCGTGTTGGTTCGTGAGTGTCCGTGGTCACGTTCGGCTCCGATTGGTTTG
CACGGTCTGTAGTGTGTTAATTACTTGTTTCCATGCCGATTCGCAGCGCGTGCCGATAAA
CTTAGCGGTAGTGGATAAGTTTAGGTAGTGCAGCATATAGAATTGTGTTGCCCATGTGCC
TTGGTGTCAATTCTGTTGGATTGCGTAGTCACTGCCTTCCCGACCTTATGGATTCGTGGT
TCTACAATTGAATAAACAATTGAATAAACAGAGTGTTCCCATTATTTATACCAGTGTTAC
TAAATGAGCTAGAAGTCGAGAAAGGCATTGTCCATCTTTGTCTATGAACAAATAATAGGC
TATGTCAGTTGGAAGTCGTCATTGTCCATCTTTGTCTATGAACAAATAGAGGCTATGTTA
GTTGGTGAAGCTCCTTTAAAAAGTCGGTGGGTAAGCTTGTAAATATGTGTTCCTCTTGAG
TACCACTAATTTGCTTCAACTACAGTTATTTAGGTACAGAGGGAGTATAAATTATGAAAC
TGGAAATCCAGATCCTCCCTTTACAAGGCATTAAATTTTGGAACCACAAGTTTCATGTGA
TCTCATGTTCTAATAAAATGTAGTTTTAAAACGACTAGACATATGGAAAGAATATTGTGA
CTGGTCAGGACTTCTCAGATGTGTCAACAATGCTGACTTTTCCTCTAATGAACTTAGTAA
GGACCTAAGGAGCAAGGAGGATAAAACATACTTAGGAGTCTTGTTATAGCGATCTCAGAG
TTCGTGTTAACAATATGTACCAATGACATAGACATTTAAGATTATATATTTCTCTGTTTT
CATGCATTTGAAATTAAAAGGGTCTTTTTGTATGCAGTGATGGAGGCTACTTCAATGCAG
TAATGACCTTTCCCCAGGATTACCCAAACAGTCCTCCTTCAGTAAGATTTACTTCTGAGA
TGTGGCATCCAAATGGTGAGCTCTTTGCTAGCTCTCTCTGATTCTGTAGCGTCATGCCTA
TATTCTGACAATGTTTATGATGTTGAATTCCTAGTCTATCCCGACGGGCGTGTGTGCATT
TCTATTCTTCATCCACCTGGTGATGATCCCAATGGTTATGAGCTTGCAAGTGAACGGTGG
ACGCCAGTGCACACGGTAGGTTTTTCTAGCCCCCCCATAAGTATTTTGTATTTCAAATAT
AATATAATTATATGAAGTCTCAAATCTATTAACCATCCATCCTGGTACGGAACCTGTATA
GACCAGAAATTTAGAAGAACCACTGCTTTCTAATCCAATCATCTGCATTAATTTAAAAAG
TGATTCCAGTCTGCTTTTTGTTTAGTGGCGGAACCTGTTGTTAGGGTTCTGATCATCCAA
ACTGTTTAAACCCGCAGCAGACCAGCTCTTTGCCTCTTTTGAAACAGAATTTTGCTGATA
AGTAGCTTACACATCAGATAATTAACTTCTTAGTTGAACCAGGTTATGTTTATTTTATTA
TCATTGTAAACGGCAATTGTTCTATTATTTTAATGCGTCTGTTGCAAAATGGTCCTGAAA
TCACCTTTATCTTATTGTATACAGCCAAACAGATTGGATATGTGTCAAATTATTCTTTAA
GTATTTCAGCACCAACTTGAATGCATTCTTTTCCTAACTTTTTGTGAGTTCATAACATGC
AGGTTGAGAGTATAGTTCTGAGCATTATTTCGATGCTCTCTAGTCCAAACGACGAGTCGC
CAGCAAATATTGAAGCTGCTGTAAGTGTCCTCGTCATTTATTAGAGGCTATTTTCTTTCT
GTGTGCTGGATGGATAAAATGGTGCAAACATAATTCCATTCTCACGTCACGCGCCTTCGT
TGCAATGTTGGAAATCACCACTTATCTGATCTGCAGTAGCTTGTTTGCTAATCGGTGATA
TACATTATTGTAGTTTATCATCCAAAATTCCTTTGTCTGACATTGCCTATGGATGGGTAT
CTTCATTTTTTTTAGCTAAGTTATATGGAACAAAGCATGTTGTTGCAGGTAGCATGTACT
GTTTTCTACTGCTAGTATTAGCCAACATTTGGTGTGATATGTTTCATCTCTGTACTGTTT
TCTACTGCTAGCATTAGCCAACATTTGGTGTGATATGTTTCATCTCTGATATTTTCGAGT
ATTTCTTTGGATCATTATAAAACGTCTAGTTGGTGCATCTGGTGTACCCGCTTTGGTTTC
TGAAGTTATTCTTTGAATTTTGCCGTGCAGAAGGACTGGAGAGAAAAGAGGGCCGAGTTC
AAGAAAAAGGTGAGGACCGTTGTTCGCAAATCTCAGGAATTCCTCTGAAAAGGGAGGATG
ATATGGGGGGGAGTCCGCAAGCGCTGCAATTCTCTTGCTTTCACCGAATGGAGGGAGCAC
TTGCACTTCTCCCCTTGTTTATTTTCCGTTCAGTGTCGGTCGAATGGTGATGTTGGTCTT
GTCTCTCTGAAACACTGGAGTGCTGCCTATTCTAAACTTACCGATTGTATTTGTGTGGCA
CGGAGTTGGTCAATGCCAAGCAGTAGTATTTCCGTGTGCTGCCCCTTAATCATAGTCGTC
ACCGTGAACCTCATAACAAAGAAATTGGGTTGCCTGGTTAATTGCAGGAAAACCACGGGA
AAACCTATATAATATTCTCAGCCTAACATATATTGGCACAAGCAACAACACAGCCGGATC
ATTGAAACCAACTGATAGTTTCATTGACATCAATCACGCGATGACTTCGACTTTGGTTAC
ATGGGCGACTTTGCCTTTGGCTAGCACTGACTTAACGCTTGATCAGACCCACTTCAACTT
TGCCACGCACATTTATAAGAGGCGTACCAACCTTTGAGCGATCCCAGCCCCACTCGTCAT
CGCCATTGCCGCCACACTAGTCGCAACGCCACCACATGAACAAGCCACCAACCACTAGCC
CCTTGAGCTGACACCAACTCAAAAGTCTCAAAAGTCGACATTGCCTTCATGAAGGTAGAT
ATAAGGTTTATGCTGTAAAAAAAAGGTAGATATAAGGTTACCCCTCGACCACGCACTTCA
GGACAACATCGCCTCCATAAAGGTAGATCTGAGTTTACCTCCGACGAAGCACTTCCATGA
CAGCAACACCTTCATGAAGGTGACGAAGTTCGTGGATGTCGTCCATGCTGACTTCGTCCA
AGGATCAGAGATGAAGCTTCCACTCTGCTTTGATGCGCATTCTTAGGACCCTCACGCCAA
CGAGCATACACCATCATATATATGAGCAGAGAGCCAGGCCGCTTGCTTCCCCTCCAGGAC
ACCACACTATTTTTTTTAAAGAATAGTTGGCGTTCATTGATAATAGCAGGACACCACACT
ATTTTTTTTAAAGAATCGTTGGCGTTCATTGATAATAGTAGGAAGCAACGGAAAACAATA
AGGTGACGAAGGTCCTAGGACCAAAGATCCGAAGATCAAAGAAAAGAAAAAAAACAGCCC
TAATAGCTGCAGCCCAACACTCCACCCAAACCAAACTAGACAGCGCAGCTCCGGCTCAGA
CGGAGAGCTACGGTGAAACACTCCTTCGATATCGCTCAACGCCATCATCATTGCCACAGC
AACCACCGCGCACGTCCAGTCGTAGAAAGCACTAAAGGAATCATAGTCTTCAAGACGGTG
CCCTAAAGAAGGGAACGGCGTTGAAGACGATGCCACCACCCGACCCTATAGCAGGATCTG
GGACACCGCACTATTGGGTAAGCCCGCCACCACACTTGGACTAGAGGAGCAAATCACGCG
CAGCACCGACACTCATGGCGAGAGGAGTGACACCGAAGAGGGATGGCGATACTCTGAGTT
GGGGAGCTATTTGTGTAGCCCTCACTGGAGTGATGTGGTCACATATGGGTGTTTTTACCT
TTTCCGGAGATAAAATAAAATTCATATCCCGCATGAAAATACCGATCGGTGGCAATGGCT
GCCAAATAAGCAGCTAAAAGTTGTAATGCCTTTAGTATCACTTCACTTACTACGCCCAAT
AGAACTGGGCTCATTTGAGCGAAAAAGGCAAATGAAGGCCGGACGCCATGGTGGACTTAA
AAAAGCATATTTTCACATCATAAAAAATGATATTTTTGGGCATACACAAATACATATATA
TCATGTTGAGGAAAAAATTTCAAAACAATATACTTTCATACATGACGTGTACAAAGAAAC
AAATACATAAATGAATATGGGCCATTTTTTATGTTGTTGGGCCAGGATATTTTTGTGTGC
AGCTTGCAAACAATAATATTTTTGAACGAAATTTTACAGATCCGTCATAGATATTTATAA
GTTTTTAAAGAATTTTTTTAATTTTTTCAAACTTGGAAATATCATTTTTGAATCATTTGA
AATAAAGTTCACCAATGTACTCGTCCACCAATACTTTGCACTCCTCATTTGGGAGTCTAT
AGTGTTTTCGTATTTCCGCCCGAGGCTATGTGAATGCCTTACACCAATGTAGCCCTACCA
ATAGGTAGTCATGCCTCCTGCTAGTTCCCATCCATATTTTTCTTTCCCGGTCTCTCTTAT
GTTCTCTGTCTCGAAAGCATCTGACTCTTGCCCGTAGCCAAGGAAGAAGATGGCTAGCAT
GAAACATTGAGTCTGAGGAAGTAGTCGCGTGCCCCTTTGCTTAGAGATGGATTTAAATAA
TAAGCTAAGGGTTTAGGGTTTAGGGTTTAGGATCAAGATTTATGAGGCAACAAAAATGTC
GGTTCTCTTTTCTAGATACAATAACTCAATATGATGCAATGATGGTTGATGGAGTGAAAA
TTAAGCTATGAGTATGCCTCTTTGGGGAGGACCCCATACATATTTATAGGAGGCCAAGGA
GGGCGCTGACTTTGGGAGGGGGGCTATCAGATGGTTCGGCCGAACCAGGGAATGGAGCTC
TTCTTGAACTCACCCCCCAGTAGCCCCAAGCAAAGAGGGGGCACACCACTTTGGGGCACT
ACTCCTTTGTCCAACCAAGGGGTCAGCCCACTAGGACCCTCTGAAACATTCTCGAATATT
TAGGAGGCTTCCAGTGCCTTCTATAAAATTTTGGGACGCGCCCGAGACCATCTTAAACAC
TTACGAAACCATTTAGAACGCTTCTAGTACTCATTCTCTCATTCTCCAATGTCTCCTAGT
TATTTTATAAACCACTAGTCGTTAAGACTGTTACCCGGGTTCGGTGATATGTGGACATGA
CCCGGAACATCTTATGGTCAACACTAAACAACAAGATTTAGACACCCATGTTAATTCCCA
CCAGATTATCCTCATTACCATTTGTTTTTATTGTTTCTCGTTTTCATATTTCGGTATCTT
CGTGATCATTATCACGCTTGTGTCTACCCATACGATGATGGGTACCATAATACCGAGTCG
GTCTGGGGAGTATGTCTCCATTGTAGGAGGATCAAATCCCAGTCTTGAATCATCGAGAAC
CTTGACATATTTTTTTGGTATACGTGGAAGCTACCTTCATGATCTCCTGGCTACGAGAAA
TGTATGGCAACCCCAAAGTATCCATATGGTATAAATTCCTACTATATTCTCAAGCTCTAA
GGATGTGAGTAAGCGTTAACACATAATATGATAAATATTCTCAGGGTCTAAGGATGTGAG
TAAGCGTTAACACATAATATGATAATACTTGAAAGGACGTGGATGTCGCCTAGAGGGGTG
TGTGAATAGGCGCTTTAAAATAATTACGGTTTAGTCTTGTACAAATGCGGAATAAAACTA
ACGTTTAATTTGTCAAGCACAAAACCTACAACAACTAGCTCACCTATGTGCACCAACAAC
TTATGCTAAGAAAGATAAACAACTA