Map Locations of contig_1562091 (9926 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1562091

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11894 1 1807 bp MLOC_11894.1 Available Available None
MLOC_11893 9 5937 bp MLOC_11893.5 Available Available LOC_Os01g08460.1, FRAME:+3, EVALUE:2e-135, 13101.m00885 protein TMS membrane protein/tumour differentially expressed protein, putative, expressed





CDS Structure of MLOC_11894






CDS Structure of MLOC_11893






Contig Sequence (9926 bp)

>contig_1562091 9926 assembly3_WGSMorex_rbca.fasta
TTTTTTCTCCCGTTGAATAAAATTTGCAGGTCTTAGTGTCACCTCATGATACTATTCATG
CATTCTAATTCATCCATTTAACTTCATCATTTGTTCGATTCGTTTAATTACATCGTCACC
CGTAGCAACGCACGGACACATCTACTAATATTTATAACATGACTATAGATGAGCAATTTA
TAATAGAAAATATTGATGCAAAATGAACGTAACAATGTAAACAACCTCTGAGCCACACAG
TTTGAAGCCGAATTCAACCTACAGACGAGGCAACAAAGAAAAGATAGATTATGCCGCGAG
AGATGTTAACTTCCATGGGCTGTATTTTGGGCATTATTTACAGCGGAATTTATCCTTTTT
CTGCCCTCAACTATGTGCACAAAAAAAAACTGATATTTTAAAATGATATTGCATGGGAAT
GTTCACGGTACCAATGCATCCAGTTTGTCTTCTGTGTGCATTTTTTATGGGCGACCATTT
TGCATTGCACCATAAACCCCGAAAGCACGCCCGATTCGTCCTGCTTGACATCCATATGCA
CCACAGAATGCGTCTCGGTGGGAAAGTACGTGCCACCACTACGGAGGTCAAGGATCCATC
CGCGTCCCCGCGCCAAATCCAGCCGTGCAAGGCGGGTACGTAGCCAAAGCCAACTGACAT
TGACGAGTCGGAGAACATGATGACCCACACCATCTACATGTACACAAGTGTGCACGTACG
GTTATCGCCGCTGCGTTGCACCCAAAATGGACCCGAGACAGAACGCCCTTCCCCGAGCAT
GTTGCGGAGGCAGGGACATATATGGGGGCGCCATGACGTGCGCGCGTCTGCGTGGTCCAA
AAGTGCACGAAAGAGCGATCGAGATCGGCGATGGACGGGCGACGGTACTCGTCTATATAT
GTTTGCTGAGGCGATTATTCCTTGCAAGTGATTGCTTGCTTGCTCACGGGGCATACATGA
GTGGAGTGGATCGATTCATTCGCAAGTGGCTTCTGTCGTTCTTCAGCTGGCTGTGGCTGT
AGGTCCATGGAGGGGTCAGTTGTCGAGCCGGACGGGTCATCCTAAAAGCGGTAATCATGC
ACGATTCATACTCGCAAAGTGCACTATCCGTTAATCAGAAAAGTGGTCAGTCAGCCTAAG
TGGATATGCATAGATGGTATGGGTCAAATTACGACCCCCAGCCTTCGGTTGATCTGGACT
TTAGAGAGCCGAAGAGGCCCATTATGATGATCCAGCTGAGACTTTGTGGGAGAGCTCCCA
ATATTTTATGCGAGGTGGTAATATACGAGGAAGATTTTGCCCGGGCAGCATGTCTCGCAA
CTTGTGTCAGTTGGTGGGATAACCCGGGGATCCGCACCTCGTGACGCAACAGTGCCCTCC
AGCACGGCCAGCCAATAAGTACCATAGAAAAAGGTTAAGAAAGACCCGGTTTTGTATCTG
TCCCGTCCCTCCTAGGCATTGTACATTCATCCACTCATCCACTCATCCACATGTAAGTTT
TCGCAAGTCAAAAAAATCCATCAACGTGTAGACAAACGCAGGAAAAGATCTCTGGCAGTT
GTGGCGGATACGGGGCCTGAGCCGAGCGACTGCCATTCCTCGCTCGTCGCTGCCGTCTCC
GTGCAAGTGTGGCGCTCAGGCCGCGCCGGCATGGGACACAAAATCCAAGCCGAGGCGAGG
CGAGCGGAGCAGAGGCGACAGGGCCTAGCTTGTGGTGGGGTCAACTCGGTCCACATCTTT
TTTGTGAACGAGGCTCGTGGTACTAGCTCGTTTACTTCCGTACGTGTCCACACGCAGGGT
CGCTGTGCAAACGACCGATGATACGGCAACGAGTTCCAGAAAAGAAAAGAAAAAAAGATA
TGGCGCAGCACGGTCAGCTGGCTGCAGTGACTGTCTGAACCTCACGGGGTAGATCCAAAA
CGTACACAGCCTATGGAGCTCAGAGGATTCAGGCAGAGAGGGTCCCTGGCTGGACAAGTG
TGCATTGCATACAGCAACGGGCCGTGGGTCCGGAGCCAAGCGTGTGTGTATGGAGAGTGA
GGCGGTGGTGGTGCGTGTACGCGTGTGGCGCGTACAAAATACTCCCATATACCAAGCCGA
AAACAGAACAGAAAGAAGAAAACCACACACATGGAGTACAACGGAGGAGAGAGACAAGGA
AACCCGGTAGTAAAATATAGACGAGGCGCTGCTTGTGCCGCTTCCTTTCCTGCGGCGGGA
ATAAAACGGAGCACCACCGCCACCTCCACTCTCAAAACGATCTCGATCTCTCCTCCGCCG
GCCCCTCGGCTGATAAAACCGCACCTGTTGACGCCAGTAGCTAGTGCACCGCCATTAGCA
ACCACAGCTGCCCAACGAGCGACGACCTACACCACCCGAGGCGGGCTGAGGCAGCTGAAC
TCGTCCACCTTCAACGTACCTTCGTCTTCCCCCGTCCCATCCATGTGAGTCATCCTCCTC
CTCCTCCCGGTCTTAGTCTGCTTGCATGCTTGCTTGTACCCACGATCATCATCGGGTTCG
GCTAGCGTACGTTGAATTCCTCCCCGTTTCCCCGCTGCAACACATTAGACGAACTCAGGA
ACCATAGCCAAATCAGCACACCAGAAACCACAAGGACCGCTATCCATCCTTGTCGTCGCA
TATATTCGAGGTCAAATGCTGTTTTCCTCTCCGGCCGTATCGGTTCGGCTGCCGGGGAGG
GGTCGCAAACGGAATAGTATAATAAGCAACAGTGGCAGTTGGGTAGCAAGCAGCGCATTC
GGTTCTGCCTTCCGTGGTCGGGAGCGCAAGCTACAGAGATGCGTTCCGTGCCCGCCAACC
CCACTCCGATTCCCCTGATTCCTTCTTCTTCTTCTTACAGCTGCTGGCCGGGTAACCTGC
CCGAGGTAGGATCGGGTTCTCTACCGCGACATTCAGCTCCGCTCTGGCCGTACGTGGATC
TACCCAAGGTGCGTCGTCGATGATGCTTTAGTTACTCACAACCTCTCTAGTTAGTAATTA
CCGGTAGAGTAACACTGTGTTTAGTGGTTGGGATGGATGGCAATCTCTATATATGTGTTC
ATGTAGCAGATGGAATCGTATGAAAAATATCTAGCGGTAATCCTGAAAGAAAGGTCACGG
CCTGTCATTCAGAGAATATGTGCAGGCAAAAAAGGAAAGGATGGATTATTGCCTGGAAAG
AAGATCCTCCCGTCCCTAGCTTTACACAGAATTTAGAGGTTACCTAGTTTCTACTAATAC
TAATACAAAAAGGACTATGCATGCATGGTTGCTTACCACCAGCAGCAACTTGGCCGCACG
ACAGAGAAGAGGACATGACTAAGCAAAGAAACCCCTAAGCAATCCTCCAAACCAAGCTAC
AGATCTTTAACATAGATTATGTAATTCCTCCAAGCACAATTATTTATAGATTTTGCTACA
AATCCGACTTCATATTTTTAAGCATGGCAAATCTGATGATGCACGCGATGGCAATTTTCT
TCAGCAAGCATGGCAAATTCTTAAAATTGGCATACTCGCAACAACATAATTTGTCATCTC
GGGTTTTAGATTCTTTTTAGCATTTCTGTTAATTAGGAGCATATATATTCCTGGTGAAGG
AACTCCACATGTCTCTCTTTCCTTTTCCCTTGATTCAATATCTTTGCAGCTTTGCTTGGA
CAGAAATATCGTTCATTTCTACACTTTGCTTTGCGGCTTTGCTCTTTTGTTTTTCCACTA
ACATGCATGTATATCGATCGGCCGTCCAAAGCTCCACATGACAGGCACACAAAGAGAGCC
ATGTGCGACTCTGCATCCTCCTCAATCCTATGGCTCATGCATGGAGCTTTCTCTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTACCTCCATCTGTAATCCTAATCTTCCTTTAAAGGCAAG
CTCTGCCGCTACACATAAACGCATGCATGCAAGAATGCAACATGCATGTTCAGCAGCGGT
CACTCCACTCACACCTCGCTTTCCCTTTTCAATCATCCAGATCAAATTGGATACCACTCT
ACGTATGCAGCTTTGGCACAAAACTTTTGATGGATCAGCAGCGGCCGCTCAACACACAAT
CAATCCTAGCCGTTGAAAGGGAAATGAGAACGCAGTAAAAAAGAAAAACAAGCCGTGTTG
TTTTGCTTACAGTTTTACACTTTTACTCCGTATTACTTATAGGCATGCCGTTTAGCTCAG
AACCGTCGTGGTCAGTAGTTAGCTAGTTTTATTTTTAACTGGGTAACTGCAGTTTGTTGT
TAGTCGTTAGTCAGTCATGTGGGGTCGATAAAAGAATAGCAGGTCAACCGGAGTCAAAGT
TGGGAGTGATGGCATGGCAGGCACAACTAAATCATATTTCTGTCCAAGCAAAGCAGCTTA
GAACGGTCTTAATTTGGCCATTATAAAAAAGCAAGCCGGGAACGTCACTCCGTTGGGAGC
AGGAGTAAAAAAGTAACACATCGTTTTCGCTCTCACGAGCTTAGCCGATCCCGCCTATTC
ATAGACGATCGACGGAGGCGTACGCCACCAACAATCTCGTGACCCGCAGCCTGAACCAAA
CTTCCTGCTCGTTCATGTCCGCAGGAAAGCCGGCACAGCTATAGCAGCAGCACTCGTCCA
TCGGTGTTCGTTCTTGCGACGATCAAGTGGTCGATCGATGACGCTTGACGGCGGCGTGAC
AGTCACCACCGACGGCGCCGGCGTGCCACCGGCCACGGAGAGGGGCGGTGCCCGCGTGGC
GCCGGAAGTTGTGGTGGAGAGGGCTGCCGCCGTGGTGGCGACGCCTGCGATGGAGAGGGA
CGGCGGCGTTGGTGCCGGCGTGGCGCCCGCTGCGGCGGAGAGCGACGGCGGCGGCGGGAG
GAGCTGCGGCGAGCACTGCGTCATCCGGGTGACGGAGGAGTCGTGCTGCGCGCGGTGCGT
GTGCGCCGGCCCGAACCCGATGATGGCGCGCTACGTGTACGCGCTCATCTTCCTGGTGAC
CAACCTGCTGGCCTGGACGGTCCGTGACTACGGCCACTCGGCGCTGGGCGAGCTCCGGCG
GCTCAAGGGCTGCCAGGGCGCGCGCTACTGCCTGGGCGCCGAGGGCGTGCTCCGCATCAG
CCTCGGCTGCTTCCTCTTCTTCTTCGTCATGTTCCTGTCCACCATGAAGACGAGGAAGGT
GCACGACTGCCGCAACTCGTGGCACTCCGAGTGGTGGCCGGTGAAGATCGTCCTCTGGAT
GGCCCTCACCGCCGTCCCCTTCTTCGCGCCCTCGCCGCTCATCCAGCTCTACGGTCAGTC
CCAAACTAGCTCCCAAGTGTAGACATTTAACTCACGCTTCTTCATCCAAATTGCTGTTGC
TGATCGACGATGGCGTTTGCTTTGTCTGAATTTTCTCAGGGAAGGTGGCACATTTCGGAG
CAGGGTAAGCTACATCTCATGATCTTGCCTGCGTTCTTCAGACATTAATTTACCTTGATC
TTCAGTCACATTCTTGGAGCATGTATCTGATCAGCTTGCCTCCGGGGTTAATTGAACTGC
AGGGCGTTCCTCGTGATCCAGCTCATCAGCGTGACCAGGTTCATCACGTGGCTCAACGAC
TGCTGCCGATCGGAGCTAAACCTCAAGAGATGGTGCGTGGCGCCACTACCTTTTTCCCTC
CTCTGCCTGTCTGACGGCCAAGTTGCTGTGAAATCTGCTCGATCTAACCAGCAACTGGGG
ATGGGTGTTGCAGCCACATGCAGGTGCTGGTGGTGTCGATCGTGACGTACGTGGGGTCCA
TCCTGGGGATCGTGCTCATGTACGTGTGGTACGCGCCCACGTCCGCCTGCAAGCTCAACA
TCCTCTTCATCACCGTCACCCTCGCGCTCGTGCAGCTCATGACATTCATCTCCGTCAACT
CCAAGGTGCTTACTCGAGCTCAATGGCGTCGTCCCGGTTCTACGACCGGTCTCAAAAGAA
AGAAATTGCATACTGATCCGTTGGGTTGAATGATCAGGTGAAGGCCGGGTACCTGGCGCC
GGGGCTGATGGGGATATACATCGTGTTCCTCTGCTGGTCCGCGATCAGAAGGTGAGACAC
AAAGAGATGAATTCAGACATGTCCGTTGAACATCGTATTAGCTAGGCCGTTTCGTGGTAC
GCGAGTTGCTTTCCTTACATCTTCTTTGCATGGTGAAATTTGCAGTGAGCCGCACACGGA
GATCTGCAACAAGAAAGCAGAGGCTGCGACGAGCGCAGACTGGCTCAACATCGCCGTAAG
AACGCCTTCTCTCTTCAGTGATAATACTGCTAGTCCGGTGCAAATTTTTAGCAGGGGAGG
CAAACATGCCACCAGCTAATTTAGTTTCTAGTCTTGTCTGAAGAAAAGGTGCTGACTATG
TATTGTACTGTTGGCAGAGCTTCGTGATCGCGGTGATCGTCGTCGTCGCGGCCACCTTCT
CGACGGGGATAGACTCAAAGTGTCTCCAGTTCAACAAGAGCAGCGAGACGGAGTCGGAGG
ATGACGACATCCCGTACGGGTTCGGCTTCTTCCACTTCGTGTTCGCCATGGGCGCCATGT
ACTTCGCCATGCTCTTCGTCGGCTGGAACGCGCACCAGGAAATGGAGAAGTAAGCTTCAG
ACAAAGAGAAAACACTCTGACAGACTGAACTGACTGACTGCATTCTTCGGTCGCCAGATG
TTCCTGATCTGAGAGCATTGACTAATTGATTAACGCGTTGTCTGATCTGATCCTCAGGTG
GACGATCGACGTCGGATGGGCGAGCACGTGGGTGCGCGTCGGCAACGAGTGGCTGGCGGC
GATCGTGTACAGTAAGTCTGAACGCCATTGCTGGGCTCAAGCTTTCTGCTGCATTCGACG
AAGCTGTTAATGATTTGTTTGTGTGTCCGCTGACGAATGGACACGATTCTCGCGCTTTCT
TGCAGTATGGATGATCGTCGCTCCGATCGTGTGGAAGAGCAGGCAGGTCGGGTCGTCGTC
CGCGTGCGCGTGAGCGGATGCTTTTTTTACCTCGCTCGTGCTAATTACCTACTGATGAAG
AACAACTAATGTACTTACAAGAAACAAAAGAGAGAAGCAGGGAGCTTCACATGATTACCT
ACTGAAGAACAACTAATGTACTTACATGAAACATAAGAGAGAAGCAGAGGGAGCTTCACA
TGATGCTACTTCGCTTACACGACGCATGGACGGATGATGAAGATGATGATGACGATCAAG
AAGTGTTGGTCAGCCGCTCGTTTTTGCCAAGCTGGGGGTAAAGAGGGAGGGGAGGGGAGA
GAAGACGAACGTGTTCCTCTTTGTATATATAATGGGCCAATTTTGCGTGTGGCCGTTGCA
ATTGCAGATAAAAGCTAATCCTTCAGGAGCTGAGTTGATTGTATATTCTCACTCCGAATA
GTGATTTATCGAGGAAGCAGCACCCACGTGGCTGGATTTGAAATTCGTTGTGGGGGTGTC
GAAACTTCGGTGCCTGGAAATGAAGGGGCCAAATTCGTCATATGTTTGGCGAAACAATGT
TGAATTAGTTTCGATGGTTCGACGAGGATAGAAATATATCAAAATCACTACTAAAGAGGT
ACATTTCGGAAGGATATGTCAAGACTCTTGGTGATGATAAGTGGCACAACGAATATGCGT
CATTTGTTGTTACCGGAAAGATTAGAAAAGTTTTTCTACCACACAAGGGATGAGAGGTCA
TTGCGTACACCTCTTTTGTTAGGAGCCCATGTAGCCCATACGCGTACTTGGGCTTCACAT
GGGCCAGGCACGCCTGTGCACCACCGCTGTTGGCTACAGCAACCAATTCATCCGGTTGGA
TCAGGAAAAAGGCGGCACGGACGGCTCCCTCTTCTTCCACCTCCAGCTTTCTCCTCTATT
TTTTTGCCATTGTATCTCCATTGCTACCTTGAAGCTTTGTAATATTCATCTGTGATTGAA
TATCAATTAGGCTGGTAACATCTGGTATCAGAGACTCCTCACCACCCTTCCCAAATTCGT
TCAAAATTCTGCCCAATTCCCCCCTTCCCGACCTTTCCGTCCACCTCTACCACCATGAAT
CCTGCCTTGAAGGTCTACCTGGACAAGCTCCACGGGGAGACCAGGGCACAATACGGTGAA
ATCCACAAACAACTCCAACTTCACGAGGCCCTGCAGACCAAGCCCTCCAGGGAGCACCGT
CTCCGCACTGACACGCTCGGCCGCCGCGGCCTCTGACGGCGGCCTCTCCATCGACACCAT
AATACCTGGGATCGTCCCCGACCCCTTCTCTGCAACAACCCAGGCCTGGGAGGTCCATGC
AGCCACACACGACGCACCCACGATCTGCGCAGAGATGGCGCCTGTCACTTGTTCGACAGA
GTGCTCAACCCAGATCGACGTCGTCGCCAGCGTCGGCGAACTCCACGACATCGCCACCAC
AATCCACTACAAGCTCGCGCTCGATTTCATCCACCAGGAGGTCGAGCAACCCACAACTGC
GTAGGCGACACCATTCATTAGCATCGGCCCATCCTCAACTACCAAGGTCGTTCCTCCCGT
GGTGACCAACACCAACGTCGACCGCAAGGCCAGCGTGCAGGAGCGGGAGGACACACCACT
GCCCTCCATCAACACCTCGACCCCAGCAGCGAGTGAGATGGACCACAGCATGGTCCTCGT
CGTCTCGAGCAACCTTACTTCACTGGCGCCGACCAAGTGCTCGACAAAATACCCCATCCA
TGCGGGCGACCGGGTGAATCCTCTGTTCACCCTGAGTATGCTTTGCGCGACCTATGCACC
ATCCAGCTTGACTCACCCTGATCATCCAGAACCCTTGCGGCATCCATCACTGATTGCACA
AGAAGAATATGGCACTCACCTTGTGGACAAGAACAAAAAATTGGGGCCTGCCACCACTAT
GGCAGGGGTTCGAGCAACCATGGCCGCCGCCTTTGCAAGTGTGTATCAGATACATGGGAC
AACTATTCAGGCCAATACCGTGGCCGTTGTTCAAATATCATTCACATGCATGCTATCCTG
AGGAGCGATGTTCAGGTATAAGTAGTCATGCACATGAAGTTTCATGGTTCAATCCTTGGC
TAGTTCTGTTGCTATTCAAAAATATGGTTTTCCTTCAAGTTTCTTCTTGTTAGATGATTC
CCATGGAAGAGGCTATCAGTTTCCAATCTGTTGAGATTTTGCAACATATACCTGATGACC
CAAGGTCGCTCCTATGGTCGCCAACTAGTACAGAGAGTTTAGGCAAGACAGTGGTGCAGG
AAATACCTTGCAACGGAATCTTGCATACTTTTTCCGGCAACGGCAGAGCAGTACAGGGTT
ATGATGGAACCAAGCTCCGACCAAGACCATGACCACTATTCGAGTTCAATCAGGAGACCA
TCCAGTTGAAGCTACAATGGACATCATTTTCAGGTAATTGCCAAGCAGTACATCGATGTT
CGAGCAATACCTATGTTATCAAGTCTATCTGAAGGTAATGAGCATGTGAGTGTATGAGCA
ATTTTTGAATCACATGGAAATTTGAGGGAGTGGCCATTTCTCTTGAAAATGCAGTTCTCC
TTGGGATCCTGTGGCGTTTTTTATCGTATGGCCTAATTGTTGTTGTGAACAACCCTTCAG
TTATTTGCAAGGCGCGCATCCGCGGTTTGGGCGTCCATTTGAAGGTGCTGCCTATTTCTT
TGATCGAGTAACATGTACTGCTAAACATGACAAGTTGGGTTTAGAGGAAACATAAAAGAG
GAAAGTAAACTATGAGAGTCTGTTGCCTTGTGCATGCTATAGGGTGCAGCTGTTGGAAGG
CACCAACTGTTGGGAAACTCACGCTATAAGAGCATCTCCAACAGACGCGCTATACAAGCG
TCGCGCCGTAAAAAAGACAGTTTTAGCGCGCACGCAACGCGGCGGGCAGCTCCAGCGGGC
GCGCAAAAACGGCGCGCGCACCATTT