Map Locations of contig_1562052 (11158 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1562052

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11878 2 2008 bp MLOC_11878.1 Available Available None
MLOC_11879 1 2029 bp AK376760 Available Available None





CDS Structure of MLOC_11878






CDS Structure of MLOC_11879






Contig Sequence (11158 bp)

>contig_1562052 11158 assembly3_WGSMorex_rbca.fasta
AGTATGGAAAGTGTGTTAGCGTATACTTCTCCCTCATTGCATATGATGAGTATCTATCAT
GTTATATTCAATTGCCTATGAATAATATTTTTCTTACGTTACACAAAAAGACTTTTATTA
AAGAGCCCCTAACTTCTATTTCCACGCTCTTTATTTTCTTGCAAAACAACACCTAACTTT
TATTTACTTGTTCTTTATTATCTTGCAAACATATCTATTACACCTAGTAAGTACTTCTCG
TTTATTCATGTTTTAGGTAAAGCAAACGTTAAGTATGCGTAGAGTTGTATCGGTGGTTGA
NNNNACTTGAGGGAATATTTGGTCTACCTTTAGCTCCTCGTTGGGTTNGACACTCTTATT
TATCGAAAAGGGTTACAAACGATCCACTATACTTGTGGGTTATCAGAGAGATTGGATTAA
TAGGAATGATTGACTACTCATATCAACAAGGAATTCCTTCTTTTCTGAAATCTCATTCGG
AAAGAACTCCAAAGTTAAGCATGCTTGGCTTGGAATAATTCTAGGATGATTGACCGACCG
GTAAGTTGGTCCCGGATGCGCACGAGTGAGGACAAAGTGTGCATGAAAGACTAGTGTTGG
TCTGTGGGCTAGTCTAGATCCTCCCACACATAATGGGGCGTTACAATTGGTATCAGAACC
GACCCTTGCGGTTACACTGGCTTGCGTGGGTAGGATGCATGGTCATGTGACACATGGCGC
ATGTGGCCCGTTGTGTTACACGACATGACACATGTGCTGGGCTGGACACGCATACATGTG
CCAAGAGGGAACGTTCCTGATAGGCCGACGAGGACGTCGGTTCCTTTTAGTGGGGATGTA
TATGAGAGTATGGCTTAATAGAAATTATAGACTACTTGTATCAACAAGGAATTTCTTTCC
AGAATCCCATTCAAAAAGAACTCCAAAGTTAAGCGTGCTTGGCCTGGAGTAATTCTAGGA
TGGATGATCGATCGGGATGTTTGTCCAGGGTGCATACGTGTGTGGACAAAGTGTGCAGGA
AAGACTAGTGTTGGTCAGTGGGGCCAGTCTCGATCCCGCCAGGCATAACGGGGTGTTACA
CCCACCCTTGAGAATGTTAGCATGGGCTTTCCTTTCTTCTCACAAGGCCCAACCTAATTC
ATAACCTAGGGCTTTTCGCTTCCCCAATCACCTTTATAACCCTGAAATCTTGCAAAGCCC
GTCATGCCATCGCCGCCACAACCATCTTGTCCTTCATCCAAATCACATTGATCTCTTCTC
TCGTCCTCTCTATTGAATCAAATACCCATTATAGAGGTATGATATTCAAATCCATTGAGA
TTTAAATTGGTTCACTATGCTTGGTAAGCCCTACGTTGTATCTGATCTATGCTAGCTCAG
TTAAATCTTTGGTCTATTGGCATGAGTTCTTGCCTTAGTATTCTATAAATCCATGTTGCA
TCATTATTTTGTTCTTCCCAACCCCAGGATTGGTGTATCCATGCCCATAGTTGGGTTGCT
AGTTAGGCCATACCTTTATTGTCTCAAGACAAGGATGGTAATATATCTACACAATATGGC
ATGTTTCTTGGTACGCCAAATTTGCGTAATGGGACTGTCAAAATTTTGAATCCCTTCGAC
AAAAAAATGATTTTTGTTTGGCATATTCTCTAAAAGGATAAACATGGGGAGCACATGAAG
TTATATTAGTGGAATTATCATATAAGGTACCAAAGCATGATTGCCTAACTAGATGAATAT
ATACAAATGTGCAAGTGTGCCTCGCCACAAAATTATGCATGTGTCCACTCTATGTATTCC
TAGAATTTATGTATGATGTACACTTGTGTGTCCAATATTTGAATCTAAATATGGGATATA
TAGTGTTGTATTTTCTTCCCTAAGATCTTATATCGAACTTATGTTTATGTTGGTGGTTAG
ATATGTAACAAAAGGACTTTGTAATAGTGTTATTGAAACAAATTAATGTAGTTTGGAATA
ATCATAGAAATGTTGGAACAGAAATCTAAACTTGGAAAGTGTTTCATATGTATATGCACT
TCTTGAGTAAAACTTGAGTGGTGTTATATAGCAATGTTACTGCAAAAGTATAATATACCA
AATGTATTATATATCTCTTATTGTATTGCAGAGAGAGAAGTGTCTACCATAAGTAAAGGT
CCAATCATGATACGTCGTCAAAAACAGTATTACACTACCAATGTCAAGCTAAAAGAAGAG
GAAAAAGAACTAAAATAAATATGAAGGTGATCAGAAAACGGAGGAGAAGCAAAATTCCTT
GAAGAAGAAGATGGCTAAGTACAAGGAGGAGAAAGAGCAAAACATGAGAGTTGTTGATAA
GAAGTATGAGGAGGAGAAGGAGATGGGGGATTGGAGGAAAAGAAAGGAAAATGAGAAGAA
GATAGTCACATAAGGAAATAGGGGAGGATAACATATCCAAAATATAATCTACTTGATAAA
ATATAATACCAATTGAGTAGTGACTCTTAGCATGGATAGTGCTACCCGCCCCCCGCCCCC
TCCCCCCTTCTCCGCGCCTCCTCCTTTGAGACGACTCGTGGGTAACCCTAGCGCCGCCGC
CGCGTTCCCCCTCATGTCGCTTCCCTCCACCGCCGCCAAAGGGGCTCTGTGGCAAGGGTG
CACGGTTCCGATGAAGTTTGTGGGGATCTGGCGACTCCATCCTATATATATGGAGGACCT
CGGCTCCCGGTGCGGCGACCTCGATTGGTGGCGTACGGCGCGGCGTTGGCCGTGGGTGGT
GCCATCGGGTGCACGTGGGTGCTCTTTCACAGCTATGCGGGCGGCAAGAAGGCTATAGAA
GTTGGCGATGCGGCGGGTCCTCGCAAGTCTACAGGAGTTCCTTGGAGAAACCTCGTCTCC
GATTCGATCTACTCCGATCTATGGTGACGCTCGCCTTGCCAACTGCGGTTGTCGTCTGCC
GGTGTTGGCTGGACGGATCTAGCGGATGGGCGTGGATCCGGGGGTAACCCTTGGCCAGCG
TGGCGGCCTCCCCAAAGGCGATGCCTCGAAGCGCCAACCACCTTCCTCGAGGCTTTGGTT
TGGATCCTCTCCCTTCGACCTCCTCCCTAAGCTTAGGTGAAATCCTATGTTCCTCGGCTT
TGGGCCACGATGACACCTTGGTGTCATCCTCTATCCCAAAGGCATCGGCTGATAAGTCTT
TTTTTTTTGAATCATCTAACAAGTCTTATTTTGAAATAGCTTGATGTTATCAAATGATTC
CTCTTATTATCGAGCTAAGATGTGCATGGGTGCACATGGATATTGCTAACAGAATTGGAT
GGTCGTCCACCCAAGAAGTCTAAGACTGAGGGGAAAAGGCCTGCTCCTTCTCTTCTTGTT
TATACAAGTTCTGCTGCATCAGCATCTAAAGGACGAAGAAGAGACGAGTCAGCATCTAAA
GGTGACAGTTTGGCAGGTAACCAAGAAGAAGCTTGGTAAAAAAGATTGGTAAGCAAAATC
AGTTCCGCCCCGATGTTCAACAAGAGCAATGGTGAAAACTATCCTGGCAGAGGTAACTCT
TCTTTCTTCCTTCCTTCCTGTAAGCGTGCCCTTTTAATACACTATTAGTACTAAATACTA
GAACAAAGTTGAGGTGAACTGTCCTGATAATCTGCATCTTTTTTGTACTAGTTCTCACCA
AGGTTCAGAGAAGGCCATTGCACACACACAAAAAAAAGGGGTTCAGTCTCTCTCTCTAAA
AAAAAAGGGGGGTTCAGAGAAGGCCGGGATTAACGTCGCACAGGCGTCCAGTAACTTAAG
AGGGAGAAGGAAGACGCCATGGACAGGGCTCGGAGGTTCAAATACGAGAGGCCCTTTTCG
CCCTAAAGGCAATGAAACACACTGATGTCTATGCCTCATACTTCATGTGGTAACTATAAT
GTCTTCTCTCCATGCACATGTCCAAAGCCAAGCATTTAGTTTCCAGTTTTTCCCCCTCTC
TGTCTTGCTTTCTGAAAATATTCTTATGCATTTGACTGCATTGCTGGCTTACTGATGGAC
TTGGGACACTGCAGATCATCCCAGACAAGTTCGAGGACAAATTCCAACCCAAGGACAGCA
GGAACATGATGCTGTGGGACCCGCAGACGAAGCAGTCGAAGGCATGGTACGACGGAGTAC
ACCGGCGGCGAGTGTCACTGTCCCTGTGCGCTCTCTCCATGGAGAACAACCCGGTGAAGT
GTACGTGTGCGTCTTCGAGCTTCTGGACCAGGAATGCAACGTCAAGCTGCACGTCCACGG
GGTGGGAGGTCACCCCCATGCGTCACCGCCAGGGCCAAACCCTGCCACACACGAGTGATA
GTTTGTGTGTACTGTACCTGGAATTACCCCCAAACCCTGCCACAGACGTGTCCGGTATAG
TGTCGTTGTTAAGACAAAAAACATTTGAATTTGTACCCCATTACTTCCAAACCTAGGGTT
TTTCCCCCCTATATAAGGCGCCCGAAATCGATCTAGCGAAGTTCCGTCGAGCATTCCAGC
CGCCGCCGGCACAACCAACCAACCCATCCAAGTCACGTCGAGGTCTTCTCCCGTCCTCGG
TCTCTCCATCGAATCGATCGAACGCCCGCCCCTTGGAGAGGTCTGTATTCGGATCCATCG
AGATCCCAGTTGGTTCAACGGAATCTATGCTTGGTAAGCCCTACTGCTGTGCATCCGATC
TATGGTGGATCAACAAAATCTTTAGCCCATTCGTACCATTATGGTTTTCAATCGCCTTGG
CGCTCTGCAAATCCATGGTGGGCATCGTGCTTTTGTTCTTCCCACCACACGAAATGCCTT
CTTTTTTTTAGAGAGAGAGAGAAAACAAGAAATGGCGTTCTATACAAATCCTTGACTTAC
TTCTTCTGATCTGACTTGGCGGGCGTATATATATTCCTAATGATGTATTCGGTTTTATTA
AAATATTGGTGATTAGTTTGATGCTAACTCTTGTCCGGTGATAGTCCTTGTGTTTAGGCC
ATACCTTTCTTGTCTCAAGATAAGGGATGCTGCAAATAATTTGAAATGGATGAACGGGTG
GGGCAGTGCCTTTTACTTGAGCGCTGAATCTACATATAATTAACAAACTATCCAACTTTG
TTTGCAACGGATATCCTAACTACATTTGTTATTTTCAAGAACACTCCTACCGACTCCTTT
GTTGCAAAACTAACAACTAAGATAAATATATTTTCCATATAAGCTCTTGAGGGAAGAAAA
AAGAACAAGATGTATCCCATATTTGTATTCGAAAGTTGGATACACAAGTACGCATGCATC
AACGCTAGGAGTATATATAGAGTGTGGCTGCATGCATATGCATAATTTTGTGTTGCGGCT
AACTTAGATATCTGTATATATACATTGTTAATCGTCCAGTCCCCATGGTGAGTAGTAGTG
GTATGTATATCATTTTTTACCTTTGCAAAAAGTATTATACTAATATATGCATATATATCT
CCAATTGTTTTGCAGAGAGAGAAGTGTGTGACATAAGTAAAGGTCCAACCATGGTACATC
ACCAAAATCAATATAGCACTATGGGCGGCATGGTAGACAATAAGCACAATGTGAACGTAA
AAGAAGGGGTAGTTGAATATATGAAGGCGAAAGAGAAAAAGAAACAAAACAAAGAAGAAG
GTGATAAGAAAAAGGAGGATAAGAAGATGGTGAAGTACAAGGAGAAGAATGATAAAACAA
GGAGTAATGGTAAGAAGGATAATGAGAAGGAGAAGGAGGATCAGAGGAAAAGGAAAGAAA
ATGAGAAGAAGATGAAGGCACATAAGGAAAGAGAGAACGAGAAGGGAAATGATAAACAGG
AGGAGGAGTCAAAACAAAGGGATGCGAAGGATGAGAATGATAAAACAAGGGGTAATGGTA
AGAAGGATAATGAGAAGGAGAAGGAGGATCAGAGGAAAAGGAAAGAAAATGAGAAGACGA
TGAAGGCACATAAGGAAAGAGAGAAGGAGAAGGGAAATGATAAACAGGAGGAGGAGTCGA
AACAAAGGGATGCGAAGGACGAGAATGACCCCAAAAAATGCCCTCAATTCTTTAGGTCGC
TCATAACCAGATCATCTATGGAACAAGAGGTAGGTTTTCTTGATTTATAACAACAATTTA
AGAGACTAACCCATTTGTGCAGTTCCATTTCTATCTACCATATTTGCATGATTGTTGTGA
AGGTTATCTTTTCCATCGGGGTCCAGTTTAGGAATGGTGCTTACTAATTTGACAAAGTTA
AGATGGTAGATAGAGCCTATTTCATCACAGTTTTTTTTAATTAGTGACTGATATTTTTCA
AACATGCACTATACTATGATGTCTGACTTTGAAAAGGAATAAAAGAGAGATAACATATCC
ACGACATATATGAGTATGTTATATCTAATACTCCCTCTGTATCAAAATATAAGATGTTTC
AAGACATGAAGTGTCAGAAAACGTCTTATATTTTGATATAGAGGGAGTATATAAACTAGT
TCATGAAAGTTGGTATTCTTCGTATTTATAGTTTTTTAGATTGTAAAGAAAAGAGAAATA
TGAAACATTTTCCCCAAAATAGAATGCCAAGTGAGCACTGACCGAGACAATATATGCTCG
TTTGGATAGGGGTTTGGACCCAATCCTTGAATTAGTTCAGATTGATTATTTACACCGTTA
ACTATTACCAAACTCTTGAAATCAATCTCCAACACTACTATCAAACATTTCACTACTAAA
GGACCAGAATTGATCACCTTTGACGGGTGCCGGGTCCATCACTAATCTGTTGTTAGTGGA
GACTCATCCATCACTCGTGGGATAGGACCCGTTAGTGTAGTTGACTTACGACACCGACAG
TCCCTTTGCTCTCGCTCGTCATTGACCATGTCATCAGTGACGTATGATCACCCTTAAGTA
GTGACAAGTTAAATGCTATTTATTCATAGCCTGCATGCACCCCATTTCACTTTTCACTGA
AACAAACATTTCATAGATTCAGGACATTTGATTCAAGATTCTGAAGAACTGCAACATCAC
ATAGATGGAAACTCATTACACATTCATCTGATCATAAAATCCATTGGGCATTTGTAAGAT
GACTTGGCGCAGACAATTCCATAGCACACAGCCTTTTTTATATTATTTTTTAGTTTTTGG
TTGTGCTCGACATGCTTTGTCATTGATTAAAATGATAACATATGTTGCAGACAATTCCAG
AAGACTGCCACAAATACTTGGAAGAGTGTACAGGAGTGGTTTACCTCAGAGGTCCAAGTG
GAAATAAATGGCCTGTAGAGCTGGCTAAAATCTCTGGGGAGCTATGCTTTGCGCGTGGAT
GGAAGGAGTTCCTCCGTGACCACCGCGTCATGTATGGCTACCTGCTGGTTTTCCGTTATG
ACGGGCAGTCACAGTTCTCAGTGACGGTGTTCTTGCCATCGTACTGCGAGGCGCCGTACG
CGTCTCTCGCCCAGCCGCAGTGCATGGATGCCGCCGTGGCCGCAGAGGATGAGAATGTGC
ACACGGGCACCGTTGCAGATGGTACTGCCCCACAAAAAGAAGACTCTCACATTCGCATAC
GTGCAGATGGTACACCACAAAATGGACATGAAGAAGAAGAAGATGCTTTAGAAGAATATG
AAGGGGGCGACAACATGAGTGCCAATGCTGACGGCACTGGTGCACAAGAGGAAGAGGAAG
ACACATTATATGAAAGTCCAGAGAATGATGAAGACAGTGAATGGCGCAGTGCACCATCGC
AGCAACAGCATGAGGATCGAGGCAAAATTGACAATGGTTTTGTGGTCAGGACGAGGACTT
GGCTCAGGAAGGAGGATGATATCATGGCAGAAGTGGTCCAATCCAAGAAGTCCAAGGTTA
TGGAGGGAATAGTGCATGAAGCTCTATCTAGTGATTCAGAGTCGGAAGGAGAAGCATTAG
GTAACAGTTTAGCAAGTACTCCTAATTAAGAAGAACCCTCTCACACTGATCGATTGATTT
CAGAATTATTAGAACTACTTCTACTTTTTAGTTATATATATTGGCTTGAAATGGTGTAAT
GTTGTAAACTGATTGATATGCTCTTTTTATCGAGCTAACCTGTGTCTCTGTGCACATCAT
TTATAAGCAGAATTGAAGCATCGCCCATCCAGGAAGTCCAAAGCTGCTGAGGGGAAAAGA
CCTGAAGCTCTATTAGGTGACAGTTTGGCAGGAAACCAAGAATAACCCTCCGATCGATGC
TTGATTTCAAAATAATTGATAGTACTATATTTTACATATATATTTGTATGAGATGGCTTG
GTATTGTAAAATTATACATGTGCTCTTCTTATCAAGCTAACATGTACATATGTGCATATC
GATTTAAGCAGAATTGGTCCGTCGTCCACCCAAGAAATCCAAGGCTGAGAGGAAAAGGTC
TGCTGCTTCATCAGCTTCTAAAAGAACGACATCAAGTGACAATTTGGCAGGTAATTAGGA
AGAACCCTCCCACACTGTTTGATTGATTTCGAAATTATTAGAACTACTTCTACTTTTTAG
TTATATATATTGGCTTGAAATGGTTTAATGTTGTAAAATGATTCTTATGCTCTTTTTTTT
AGCTAACCTGTGTCTCTGTGTGCATCAATTATAACCAGAATCGGAGCATTGTCCACCCAG
GAAATCCAAGGCTGCAAAGGGGAAAAGGCCTCAAGCTCAATGCGGCCATTCGGAGTCTGA
GGGAGCAGAATCAGGTGACAGTTTAGCAGGTAACTAAGAATAAACCCTCCGATCGATGAT
CGATTTCAAAAAACTGTTACTACTTTTTACATATATATTGGTATGAGATGATTTGGTGTT
GTAAAATGATTTCTGTAGTCTTGTTATCGTGTTAACATGTACATGTGTGCACATCAATGT
AATTAAGCAGAATTGGTCCGTCGTTCACCCAAGAAGTACAAGGCTCAGGGGAAAAGGTCT
GCTGCTTCATCAGCTTCTAAAATGACGACATCAAGTGACAATTTGGCAGGTAATTAAGAC
GGAGCCTCTGGTCGAGAATTGATTTCAACATAAGTAGTACTTGTTAGTTACACGCGCACA
CACACACACACACACACACTGGTTTGAGATGGCTTAAATGTTTGTCGGTTTTGACTCTGC
TATCTAGATATCAATGGTCTTCTCTGCCCAAAAAAGAAAGCAATAGTCCTGTCATCCAGC
TAACTTGCGCGCATATAGTTCATACAGGTGTATTCGCGCCAGAATCCGTATGCAAGGACT
TGACCACATTACGCAAATCTTTTGGTAACAAATATAGAAAGGAGGCCCAGTTCCCGATGT
TCAATAAGAGCAACAGTGAAAACCTACCTGGTAGAGGTAAATCTTCTTCCTTCCTTCCTA
CACTAATTACAACAAAATTTCAACTGAACTAGTATCTTAATAATTTGCATCTTCTTTTAT
ACTTAGTTCTCATCAAGGTTCAGAGAAGGCCAGAATTAAAGTCGCAGAGACGTCCAGTAA
CCCAAAGTGACAAGAAAGACGCCATGAACAGGGCGCGGAGGTTCCAATCCGAGAGGCCCT
ATGTTATGAAGGAAATGAATCACAACAATGTCTATGGCTCGTGCTTCATGGTAATTGATC
AAATTCTTTTCTGGATACACATATCCTAAAACTGCATTGCTCGCTTACTGATCGACTTTG
GACACTGCAGATAATACCAGACATGTTCGTTGAAAATTTCCTCCCGAAGGACAGCAGGAA
GATCACACTGTGGGACCCGCAGGCGAAGCCGTGGAAGGTGTCGTACGAGTACACCGGCGG
TGAACGTCCCCGTGCGGCGTTCAGCGCCGGGTGGGGCGCGGTCGCCATGGAGAACAACCT
GGAGAAGTGGGACATCTGCATCTTCGAGCTCCTGGACCAGGAGTACAACATCAAGCTGCA
CGTCTTCAGGGCCGTGCTGGAGATTACCCCCTTCGTCCTAGCCCCAAAACATCATCCACA
GGGTTGTGCATAGCCCTTTGTTTTTGTTCTAGTAATATGTTGGTGATGGAGGCGCGTGTT
GGTGACTATTTTGTTGAATTATTATCGGATCATATTACTTTGTGAATCATGTTTGTGACT
GTTTTATTGAGTATTTACGTTGGTTTTCTTGTCGTGGCAATATGTTCGTGTGCGTGTGCG
TGTGCGTGTGCTTGCGTTACTAGCTAAAGTACAGAATGCCATGTTTGCTTCTAGTAACCA
TTTTGTTTGAAACGGACTATTATTTTCGTAGTACTCTATTAACTTGTAGGCTTTGAAAAA
ACAGTCAAGTTGTGAGCTGTCAGAACCTGTTTTGTCCCTTCTACTAGAAAACAAGGGTTT
GGCTGATTTTTTAAACAAAATGTTCAATTCTTTGTTACTACTAATTTGAACTAAAACCAT
GACAAGGATTATGGAATGGAGGGAGTGTTGTTTTATTCTAGCTGAGACGTCAATATTAAC
AATGTCGGGTGACAAGAAACTCATTTTCTCAAGTCGTCCTAGTTACCTTTTGTTGGCCAC
AAAATAATACTTGAATCTTTTCCAAGAAGTGAAGAAACCAGCCACAGCAGAGCTACCATT
TATTTTTTCTATACTTGTAGAACCAAGGCTCGCGATGAGTCCGTTTTTGAATTAACAAGC
CATCAACCGGCCAGGATTACAACTATCAACAACTTACAAGTAAGAACATGAAAAAATAGA
AAAAATAACACACGATAGATATAAGGTGCACAGATGATAGAGCTTAAAGGCCACGGCATA
AGCGATCAAAGCATCGCAATGCCACGTTCATCGCCCTATGGTACAGCATACACCTGCAAA
ATGGACTAAGGGCTACCGAGGAATGCACCGCCGCCCTCGAATGGACTAAGGCTCTATAGT
ATGTTATGTTGTGTACCACACNTGATGTGTGCCTTGCTATGAATCTGTCAAGGGTTACTA
GAGTGATCCAGGAATGGATCACTGGACAACTGCCGAAGTTATCCTTAGTAACTAGTGGAN
NNNNNNNNNNNNNNNNNNNNNNGAGGTGATGAAAGAGTTCGTCGTAAAGGGTTACGTCAA
TGCAAGCTTGTCACTAATCCAGAAAAATCTGAGTAGTAAACCGGATTCGTATAGTGGAAG
AGTCATTTGGAATAGTTCCAAATGGCGCATGGTAGCAGCATCTATAGGATAAAATAGA