morexGenes - Barley RNA-seq Database

Contig contig_1561958
Source Contig contig_1561958
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561958 (6641 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1561958

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11854	2	2095 bp	AK361152	Available	Available	None
CDS Structure of MLOC_11854

Contig Sequence (6641 bp)

>contig_1561958 6641 assembly3_WGSMorex_rbca.fasta
GGAGGAAGGGGGAGAGGAAAGGAGGAAGAGGTGGGCACGCACGTCGATCCAACGCCAGCC
ACACGACCGGCCCAACGTTTCGGCCGACGCGGTGGCCGAAAACGTTTACCCTTCGTTTTC
TTGTGCCTTTGTTTTTAAAAAAATATGCCCTTCGCTTCAATACATGTAGTTGTTTTAGTT
CCGGATGGAGTAACTATTAGTCAAGCCATTAAATCTGGATAATTCCAATTATAAAAGGGA
CTTAAAGGTAGGCCATGTTTGGTTCATAAGTCTTAGTACTTTTTTAGTCCCAACTTATAA
GTCCTAAGTCCCTAAAAAGTTCCTACGTGTTTGGTTTCTAGAACTTAACATGAAATAAAA
TACGATATTAGAACTATAAGTCCCTATAAGATTCTCCTTGAGAGTCTTTGTAGCATGGCA
CAAATACTTTAACAGGTTGTTCTTAAAATAAACTTTCACGGGTTGAAGAAAATATTCCAC
AACAAACAAAGAAACAAAAATATATGGCGCGGAACTATTGCATATATATAACAAGGAATG
GACGCAAGCTATTGCACCGCATATAGCGATCACATGCATGCATATATATGCAGTTTTATT
TTTGGAGCTTCATCGCATGCATTGATGCATGGCATGGAGACTTATTTTGGCACGAAAGTA
ATTTAACTTGAATCGTACGTGTTGTGCTGCATATTCTTGTGATGGATTGGCTGCTACTCG
ATGCATCTCACGGTTCATGCATGGAGATCATCGATGGAGTAGACGCATTGCTTGAAAGCC
TCGAGGTTATGCTGAAAGACGGGTACGAAGGCATCGACGCTACCGTCTCCGATGTAGGAT
GGCATGAGGAAGATGAGCCCCTCGAACGGGAAGTAAGAGGGCATGATGTACGATGGCGTC
CCCGTGCCGAAGTCGAGGTCGTAGAACGGGAAGGTGAGCCAGCTATGCACCTCCAGGTCC
GGGCACAGCACTTCCCTCAGGTTCAACGCGGCGCTTGGTGCCAGCCCTTCCTCCTCGATG
ACGCCGGAGCTCGTGAAGTCGACGAACGACCGGAAGTACTCGGCGTCGGCCACCCTGGCC
ACCTCGTCGTGAATGGTCTGCGCGGCATACTTCAGCGGCCGGTTCAGCAGGTCGCCGGCC
GTGGCCTGCGGGAACGCCCACAGGACGAGGTTACCGGCGTACTCGGCCGGCACGCCGAGG
CGGTCTCGTCCGTCCACCGACAGACGGATCTTGGAGGTCTCGTTGTGGCGAAGTCCCCTT
GCGCGCGTGGTGGCGCGCCACAGGTGGGCGAGGATGCTCTGGAACCGGCTGAAGGGGCGG
CCGCGGCCTTCCGACGCGCTGGCACGGAGACGGGCTATCCAGTCCTTGGTGAAATGCGCC
TTGTGGATGACGATGTTCTTCTTGATCTTGCCGTCGGCGTCGCTGCCGACCTTGGTGGGC
AACGGTGGCACTGGCATGTAATACTCCCGATTGCGGTGGTCGAACTCGACGCGGGGCACG
GAACGTGACTTGAAGAGCTCGTCGTGGTTGTACACGGGGGGAAGGCCCATGTCAACTCCC
CTGGTGGCACGCCCCCAAGCGACGAGGAAGTTGCTGGTGCCACGGCCGTCGGTGACGGCG
TGGTTGGACGTGAACCCCACGGCCAGGGAGCCGCAGCGGAACCGTGTGAGCTGCAGCACC
ACCACCTCGTCCATCCCTTCCTCCAGGTTCGGGTGCAGCAGCAGCAGCTCCGGCTTGGGC
ATGGGCGGTGCCACGTCGACGAGGTCGGCGTCCACACACGCCTCAACGACGCGCGCGCCG
TGGTCATTGAGCAGCACGGCCGGACCTCCGCCGGGCGCCTCCCCTAGCTGCCCCGCGAAG
CCGCGGTACCTGGCCAGCGCCGCGGCCAGGCCCTTCTCGAGGGCGGCCGTGGAGGGGGAC
GGCGGCGCAAAGACGTAGATAATGGCCATTTGGATCTGGTACGTCACCCTGTCGAAGACG
GAGAGAGGGACATACTCGAGTCCAGCGTCGACGGCGGCATCGGTCGACGCAGCCGGCCGG
ACGAGCTTCGAGCTTAGGACCTGAACCTCAATTGCCGGTGCCGGTCTGTCCGGTTTGGAT
GGGACCGGGACCGGTGACGGTGAGCTAGCGACCTCCATTCCCGGCGCCGACCTTTGCGGC
TTGGACGGGACACGGAGCGGTGAGCTAGCTACCTTCATTGCCGGTGCCGACCTGTCCGGC
TTGGATGGGAGCGGCAGCGGTGACGGTGAGCTAGCTACCTCCATTGCCGGTGGCGACCTG
TCCGGCTTGGATTGGATCGGGGGCAGTGACCTAGCTACCTCCATTGCCGTTGCCGACCTA
TCCGGCTTGGATTGGACCGGGAGTAGTGGGCTAGCTACCTCCATTTCTTGCTTTGTTGCT
TGATCTGTGCTGCGGTGCTGCTGCGTTTTTAAAGGTCTTCAGCTGCATGGGTAGGCGGCC
GGAATTTATTTGGAACAACACGTATGCATGGATGATCTCCACGCGCTCCACGCGCCGCGC
CCGTCTCCAGGCTGCATGGGGTAGGGCAGGCGGGCATTTATTTCCAAGATAAAACGTATC
TGCCACGCGTTCCACGCGCCGCGCACGGATCTGGTTCATATGGTACGAGCGGCCAACGAC
CGTTCGTGTCCCCTCACCGGGGGGCCTACCTATATTACGTTCGGAGTATGCATTTAGGTC
ACCTTCAACAGAAAAATCAAATCAACGCGTCGATTCAAACGGACACGCGTTTGTTTTCCG
TCACGATATCACATTCCTATAAGGCGTGGAAAGAAAAAGACAAAACCAATGTTTTGAAAT
GCTTTCGAAAGTATCATTTTCAGATCATCATTTTTTTTGTCACGCCTTACTAAAATGTGA
TATGATGATGAAAATTTGCAAGCGCTTAGAACTTTTGTCAAACTTCATTAAAAAAATCAG
AATTTTTTGTTTTATTTGAATTTTTTATTATACTGTTCATGATGGTGCATTTCATGACTC
ACTCGCACCTTTCAAATTCATCTTAAATATGAGGACGCTACGACGGTTTATGGACCGTTC
GGGCATGCCCGATCAATCCGCCACGTAGGACGCGACCCTACCTTAAAACACCTTTTTCTT
TCTTTATTCATTCTTTTCTCTCTTTTTTTTTTCCATCAATCATGTGCAAATGATCGAACA
TATGAAAAAAATAAGGCACTGATGAGACCGGATTTGCATGAGTTAAGAGCATCTCCAACA
GGAATATCATTTTTTTGTGCGCCACAGAGCGCTGCCTTCAACGGCCGCAGAAAAAAATAC
GCGCGCGCCACTCCAGCAAAAGCCTAAAAATAAAGTTAAAACAAGATGATGGGCATAGAT
AGTCTAGATAGATAAAAACCACTCCTCGTCAATAGATAGTCTAGATAGTTTATAGATGGA
GATACTCCTCGTCGATAATTCATAGTACATAAAAAGCAATAAAAACGATAAAGTACTCCT
CGTCGTCTTCTTCTGACGCGACAGTGTCCGATTCCTCCGTCGTGATGAAGGCGTCAGTCC
AGCGTTCATCGTCGGAGGACCAAGTCGACTCTTCCTTGAGCTTCATCTGGAAGACTATGG
CTTACTTCCGGATATTCCAGTCTTCACGATAGGCGTCTTGCTCCGCCCTCCTTTGCGAGA
AGAATGTGCGCTCATCAATGATGCCGAGGCATGTTCGTCCATCTCAGCGATGCCGAGGCG
GCGCTCTCACCTTCGGTTCCGGCGACGGTCCTCTTCGATGACAAACCGCATGCAAGGTGC
GACCATCTGCGTCCACTCCCGCGTCATCACCTCGGGGGAATTCATCTCTCTATGAGACCG
GTTGAGGCGCCACGCCGCCGCGTCATAAGCACGGACGGCCTTGTCGGTGGTGCCGAACGC
GGCGAGGCCGAGGCGCATGTCGCCGGAGCGGATCTCGTTGTAGAAGGTGCCGGAGGGGCG
CGTGGACGCTGCGGTAGCCCGAAGTTCCATGACGATGCGGCGACGGCGAGGCGAGAGAGA
GATAGGAAGAGAGCGTGTGGCGAGGTAAGGGTCGAGTGGGAGCGATGGAAGGATGCGTGA
AAAAGATGCTGAATATATAGTGCGCACCTAGCGCCAGGTGTCAAATCTACCGCGCGGCCG
TTTTTTTCGGTGCGCGCAACCGCTCCGCACTCGACCTTTTGAGCTAGCTACCTCCATTGC
CGGTGACGACCTGTCCGGCTTGGATTGGATCGGGGGCAGTGGCCTAGCTACCCCCATTGC
TTGAGTTCTTGCTTTCTTGCTTGATCCTGTGCTGTGGTGCTGGTGCGTTTTTACAGGTCT
CCAGCCTGCAGCGATAGGCAGCCGGAATTTATTTGGAAGAACACGTATCCATGGATGATC
TGCCGCGCGCTCCACGCGGTCCACGCGCCGCGCCGCGCCCGTCTCCAGCCTGCATGGGGT
AGGGTGGGCGGCGATTTAATTCCAAGAGAAAACGTATCTGCCACGGGCTCCACATCCCGA
GTACAGATCTTTCGTGCTGATAACATGTTTGAAGTAGAAAGTAAAATACGAAAAAGATGA
ATGAAAGATGGTTTATAAGTCTTTATTTATAATAAAAATGAGGTATTTATACCGGACGGA
AGTACATTTGTTGCTTGGTAGTCAAGTAACCAATAGTTACTTGGTTACTTGAGAGTCAAG
AAATCACATAGTTGCATTGAGAGCCAAGGAAATACATGGTTACTTGAGAATCAAGTAACT
TATCTACTCCTTCCGTTCCTTAATATTAGTCTTTTTAACTGTTTTACTAGAAAATTACAT
ACGGATGTATATAGACATACTGTAAAATATACATTCACTTATTTTATTCCGTATGTAGTA
CATTAGTAAATTTTTTTAAAAGACTTATATTTAAAAACGGAGGAGTAACAATTAGCTTAA
TTAATAAGCAACTATTCTATTCTTAACAGTTCATATGGTACGAGCGGCCAACCGTTCGTC
TCCCCTCACTATATTACGAATTATTAAACGAGATGGAAGAAACGACCGTGCCGCCCGGGA
TTCGATCTGCCTCCAGCTATCGGAACTTGGTTCACGTGCTACACCGGGCTCGGTTCCAAA
CATATCATTTTCAACGCCATTTAGAGCAACATGGTTTAACTTTTTTTTTTGTCACGTTCT
TACTAAAATGTAATATCATGATGAAATTTTTTATTATACAGTTCATACAGGTACATTTGA
GCTCGAGCTCAAATATTCCACGTTCGAGATGGTAGAAGTTCTTCCGTGTAAGTATGTAAG
AGCATCCACAGCCGGACCTCTCAAACCCATTTCAAACATTCAAAAGGTCCGCCCGATCAC
TCACCGGTCATAAAAAATCAATTCAGGCGGACTTCTCATATCTATCTTAAACGTCCGCAA
TAACCGCCACCTTTTAAATTCATCTCAAATATGAGGACGATACGAGGGTTTATGAACGCG
TCCGGACATGCCCGATCAGTCCATTACATAGGACGTCCACCTTGGACCACATTTTTTTTG
TTTATTTATTCTTTTTTCTTTCTCTTTTTTCCACCAATAACGTGCAAATGATCGAACATA
TGAGAAAAAATATAAAAGATACAATTGTGAAGATAAAAAGGAAAGGTTAAAACAAACAAT
TCAATCACTGACCGATCATGTCCGCGGGCGTTTATGAGGCCGGATTTGCATGAGTTTAGA
GCATCTCCAACAAGAATAGCATTTTTTTGTGCACCACATAGCGCTGGCTCCGACGGCCGT
TGAAAAAATTGCTCGCGTCGTGCTAATAATAAAGCTAAAACAAGATGATGGGCATAGATA
GTTTAGATAGATAAAAACCACTCCTCATCAAGAGATAGTCTAGATAGAGATACTCCTCGT
CGATAGTTCATAGTACATAAAACACAATAAAAACCATAAGTTACTCCTCGGCGTCTTTCT
CCGACGCACCAATGTCCGATTCCTCTGTCGCGATGAAGGCGTCAGCCCAGCGTTCGTCGT
CAGAGGACCAACTCGACTCTTTCTTGAGAATCATCTGGAAGACTTGGCATTGTTAGAACT
CATACATTCTGATATTTGCGAGATTAATGGTGTGGTGACTAAAGGTGGAAAGAAATACTT
CATGACATTGATAGATGATTCCTCAAGATATTGATATGTGTATATGTTAAATACTAAAGA
TGAGGCTCTACATTACTTTAAAAATCTATAAGGCAGAAGTTGAGAGCCAACTTGAAAAGA
AAATTAAACGACTCCGGTCCGATCATGGTGGAGAGTACTTCTCAAATGAGTTTGATTCTT
TTTGTGAGGAACAAGACATTATTCATAAGAAGTCACCTCCCTATTCATCCCAGTCAAACG
GGGTTGCCGAACGAAAAAACCATACTCTAATTGATTTGGTTAACACCATGTTAGATACAT
CAGGTTTATCGAAGGCATGGTGGGGGAGGCTATATTGACTTCATGTCATGTCCTGAATAA
GGTTCGTACAAAAGATTATGGGGTCAATCCCTATGACGAGTGGTTAAAGAGAAGGACGAC
AATCTCGTACGTACCTACTTGGGGTTGTTTGATGAAAGTCAATGTGTCAATCCCCGAAAA
GTGTAGGCTTGGACCAATGTCACGCCCAAGATGCGATCCTA