Contig Data
morexGenes
Links



Map Locations of contig_1561932 (5388 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1561932

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11844 1 307 bp MLOC_11844.1 Available Available None
MLOC_11845 1 1529 bp MLOC_11845.1 Available Available LOC_Os12g31350.1, FRAME:-3, EVALUE:7e-14, 13112.m03191 protein SSXT protein, putative, expressed





CDS Structure of MLOC_11844






CDS Structure of MLOC_11845






Contig Sequence (5388 bp)

>contig_1561932 5388 assembly3_WGSMorex_rbca.fasta
TTTTGGCTTCGAAGCCGGAAGCCGGAAGCTGGCTGGAAGCCCAACCAAACACCCCCTGAT
TTGTCGTGTATGGTAGTGAATCGGTTGGAGGCAATTTTTTATTGATGATTGATTTGTTTA
TTATGGCAGTGGATCTGCTGGGAGACATGTGGGTGCATCTTCAGGAAGAAAGGAGATGTG
GTTAAATCAGCACTTACCAAACTGGGCGGGGTTGCGACCGGTACAAGGAAATAGAGAACC
GTGGGAAAGATCCATCGATGGTGGGGCCCTGGGGGGATGAACGACATACTCCCTCTTAAT
AGTAGGGATAAAACTGAAGGACTATTTGATTTGTTATCACGATGTAGCAAGTGCCTCACC
AGTTCCGAAATATTATATTTTACATGATTCGACATAAATTATAGTATAATATCTACCGCT
ATTAATCATTGCAAGCAGTAGTTTCCAAGTGCAGGAAACATTAAAAAAATTGCTTCAGAG
GCAAAACAATAAATATAATATATATAGTAAGGCAGCTAAACCTTTGGCGGGAAAAACATA
GTAATACTAAGTTCACGAACAATACGTGCTTGTAATAACTATTATGAATATTTAAGAAAA
CCGTGGTCATCCGCAAGATGCACAAGGTTTGATTGAATGCACTAGAACTTATCAAATCCA
CAATTTCATGTCCCTCCACTGCACTTATGTCTTCAAACCAAGGAAGGGAGAGGATACAGA
ACTTATGGTACCAACATCATGAGCCATTGGGTTGCAAACACAATGTAAATCCCCTAGAGG
CACAGCACAAAGGTCGATGGTGATATCTTCTCTATCGATCAAAGCGTTAAGACACATAAA
GAACCAAGTTGGTGCTCGGATGGTAACTGAAAATGGTTGGACGACCCTTTAACCACTAGG
GTTTGGCTCCCTGTGTGTCACCTAGAGGAATATTTGTTCAGTGGTAGGGGAGACACCCGT
CAATATTCAACCTCTGTGTGTCCAGTAGGTATTGTGTGAATACAAGCTAGTGGTGGTGTT
CATATTTACATGTTGTACTGAGTGTTTCTAACACAGGGGCACCAAGACACGCTACCTAGT
TTTAAAAGATAATCATACAATGGTCCGTTCAACCTTTTTCACTGGTACTCTAGACAGTTG
ACCTGTGGTTCAACAAAAATGTTTGGTACAATATATTTCCTTGTAATGACACCCAAAAAA
ACTTGCTAGGTTCAGTGGCCACCTCAGCCAAATTTGAGACACCAAGCGAAACATACAGTT
TACAAATCTCAAGTATGTGCTTTTGCGTTCACAAATAATAGCAATCCATCATCAAAGAAG
TAGTGTTTTTTGACTAACCATAACCACATCAATCATATCACATGTGGTAATGGCTAAGGG
TGTTAAAGCAGAAATCCCAATTCAATTCACTGACAGCTCAGTTGCTCAAGCGGGCATTTT
CTTTGCAAGCATATTATTTTACAGTTTTTTGCCTGCTTCATTTACTCAGCCAGTTCCAAT
ATTTACTGTCGGCCTGTTGGGCGTCGGCTGGTCTGGTTTTAGTAGAACAATGGTACTAGC
TAATGATAAATGTAAGAAGATAAGTAGGAACAGCTGAAGACGGCAGCAGAAACACAATAA
TTGTATTTTGTGCATAAAAAGCCAGAATACAAAGGAAAGCAGGATGGCTCATCAGTTAGC
AAAATTAAAGACCATATTGAATTGTATAATCTTCAGAAAAAGAGGTTCAGTCCGTTACAT
ACTGAGCACATTCCGCCAACTTTCCCAGGTTCTGATTTTCCAAGATAGCCAAAATTAGTT
GTTTATTTTCATCCAGGTACTGCACAATGAATAATGCCAATTAGGGGGATTGGATAATTA
TAACAGGTCGTGTATAGAGATAGTAAATTCAAATAGAAAGCCAGGTGGACAACAAAATAT
AAATAAATAAATAAAAACAACACAGTGCAGCATTAGAAGTTCTATAGGTATGAACGAAAA
CACAAGAATTAAAGATCGAGACTACAGATTTTGTTCAATCATCTCAATGCCCAAATTATA
AAACTAGAAAGAAGAAAGGACCACAAAGCATTAGTATAAATCTGAAGAACAAGAGATCAT
TTGGAGTTTGGGAGTCAAAAGTACAGAACTATATTCTGGGAGTGAAAATTTTTGGTCTGT
TTGTTGCACAGCATAAGCATGAGCACCCTTGTTAACTTAGAAAGTAGTTCAAACGGAGTA
AATCCAAGGTTGCTCTCAACATTTTTCTGGAGTAAAGCAACTTGGTCGAACAATGTGGGT
TTTAGTTAGTCGAACGAAGCAAACCATACTCCATTTCCAGTAAGCAGTACATGCATCCAG
CACGAAGCAAAAAATAAAACTTGTTTGAATCTAGCAAGACAGTAAAGGATGCATAACAGT
AATTAGTTGCTAGTGACTGCAAAACAAACGCAACATTCAAAGATTGGCAGCTGGAATGGA
AATAAGGCTAATAGGCTACAGAAGGATGGAGATAATACTATTAATTTATTGAAGGAGAAT
ACTGGTACCAACTAAATCAGAAAAAAAAAAAAGCTATTCAAATCACATCAATATCGGTCA
ATAAGAACGCCATCTCTATTAATCCACCAGACGAAACCACGGCTGGTAAGGGCGACAAAC
GATCGAATATTTGGCCGGCAACAAACCCTTCAAACCCCACCTAGGAGGCACGCCAGCCCT
ATCGAGAGCTGACAGAGATGTGGAGGGGGAGAGAGGGAACCTTTTGGATCTGCTCGGTGC
TGAGGCCGGCAGAAGGAGGCATCCCAGGCGCCGCCGCCGCCGGCGGCATGGGCATCGCTT
GCTGCATCGTGGCGGCTCTCGCTTCCTCTTTGTTGGGCTGTGTTGGGAGGGTTTGGAGGG
TTTGCCGGTGTAGGAAGAAACACAAAGCGCCCACCTGATGCCGACCTGCCCCCTAGAAGA
CTTCTCAGATACTCCTGTAATTTGGAAGTCAATTACATATATGCCCCTTGACATTTTGTC
ACGGCCTGTTTGGTTACCTTTACCTATTTTGGTCACTTTGCCTATATAGCCTAACTCAGC
CTCAGGGTCGGATCCATAGTGGTGTCAACTATGCGGATGACCTATTTTTTTTATATAGAT
CTAGTATTAAAAAGAAAATCTAATTAATATTGGACAGCTGGATAATGGAAGCCTGAAGTC
AAGGCGACGAGGGTGAGGCCAACATGATGTGAGCGACGAGCGCTGTCATTGAAATATGAT
GTACTCCTCGTGCAGTCATGCTATGTACAAGCGCTACATGGATCTGAGAAAAAAAGATCG
CTACAGGTATAGGGATCGAGATCGAGCAGGGGCGCAGGGCAACCAGACTCTCAATCGTGG
CTACATGAACGTCGCCTCCTCTCGTCGCCTAGTGTCCTCGTGTCGCCGCCTCGTGGTTCA
TGCCCTCGTCTCTCGTCAATTGGTCATTAGTGATTGGATCGATCGGAAATGGTAATTCGC
ATTCAGGCCGACAAGACGACACGGCACTACTGACGTTGCCTTCCTCGCCTCCTCTCTCAA
TTTTTAGATTCGTCAACGTTGTCTAGTCGAATTGATAGGTAACTGACTCCAGACTTTATG
TGCTTAGCGAGTTCCATTTTTATTAATTTTGGGTCCTATTCCTAATTCCTAATTTTGTAA
TTAACTATTGACAGGGATCGTTACTTCATTAGAGATTGGTTCTTACCTCCTTGATTAAAG
ATCACGATATAGCAATTCTACTAGAGAGGACCCAAAACTAGGTGAGTTCGACGGTTCTTG
ACTCCTTAATGAAAGTTTTCATTTCAATTAATACTAAAAGAATGAGGATATTTAAATAAA
TAGCAACCACAGTTGGATATGTAAGACTTTTTTACATGTACAATTGTCATGTAAGACATT
ATATTATGTATGACTTTGCTAGTTAGTTTTTTTTGTAAGATAGACCCTAATTTTTAGTTC
TGCAGAGGGTCTTGGATTTTGTCGGACCGACCGTCCTAGTGAGCCTCGTTGAGAAACCAA
GTTTTGCATATTGTTTGTTTGCATGCATCCCTCCAACCTGGTTGAGCAGCAACATATGCA
TTTGTGTTTGGTTATCTATGTGTTTTGTCCAGATGTAAAGAGATGTTGCTTGGTTACATA
CAACACAAGTGATGTGGTAATCTCTTTTAGAAGTGATGAGGTTATCGGTACACACACAAC
AACAACGCTGGTAGAGTGTATGTGCGTTACCATGAGCCATTTTTTGGTATTGTTACATAA
AACACGATGAATTTTTGGCCTGTACCAACGACATCGTCTTGGGACCTTTGTTGGTGCATT
TTATGAACCTGGACATAATCCATCTCCATCTCTCTCATAGATGTAAAAATAAACATATAT
AGAAATAAATATTTTGTATTATTGTGTGCAACATATATACAAAAAGAAGAAGAATTATTT
GTATGCATATTTTTTCTTATGTATAACTCGATTAGTTTTGTGATCCATCATAGTTATGTC
ACTAACTTTCTCAATCAACATTTTCAAAGCATCACCCAAAGCCATCGGTTTTTATCTCTG
GTTTACAAAAGTAAAAATATATTAAAAAATATTATATACTAGCAATGAGAACAAATAAGT
TAGTGAGATCTATTTGTATGGAGAATATTGAATATTACATTTTTCTGAACCAAGATAACT
TATTTGGAATCACATGCCAACATGTGAAAAATACATACTAAACATATCAGCAATGAGAAC
AAGTATGTTAAGGAGATCTATTTGGGCGGAGAGATGAGGAACAATGGGGGAATTTGTGTT
GCTGGGCGGAAGATTTGCGAGTTACTCCCTTCGTCGGCATGGGCCATTCCTCTAAACATG
TCATCATCTTTGATGCACATGACCTTCCTCCTAGCCACACTCGAATCTAATAACCCCATG
CTTCTTGTCCGTCGGTGATGCACCATTGTTGCTATTGTTGTTCTCCTTCCTTCTGCTACT
ATTGTTTTCTTCATCCATTCTATCAAACCGCCAACCTCACCCAGCCTAACCCATGCCATT
ACCACACACAGTTGACGAGTATTGTTACACGTCGCCTAGTTGATGTTGACCCCTACCCAA
GTCACCATCATCGGCACTTGCCAACGCCACTCATAGTTGACGGACATTGATGCATACCGC
CTTGCCACCCCCTTGCCTGAGGCGTCGCCTCCATCGTCAGTTGTGGCCTGACATCCCTCT
AGACCATGTCACCATCATGAGCAGTCGCAACCTCCCTCACCACTCATTTGAATCCGTCCA
TGCATCATCGATGAACCGACTGTTGGGTAACGTAGCATAAATTCAAAAAAAATGCTACGC
ATATTCAGATCTTCCTANNNAGAGACCAGCAACGAGAGGGGTGAGTGC