morexGenes - Barley RNA-seq Database

Contig contig_1561906
Source Contig contig_1561906
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561906 (8928 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1561906

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11835	2	1731 bp	AK361207	Available	Available	None
MLOC_11836	1	237 bp	MLOC_11836.1	Available	Available	None
CDS Structure of MLOC_11835

CDS Structure of MLOC_11836

Contig Sequence (8928 bp)

>contig_1561906 8928 assembly3_WGSMorex_rbca.fasta
ACAGATCAATCGAGATAATTCTCAATAACGGAAGAAAATTCAGCGTAAATCCATTGATTC
ATGCATAAATAATTATTGGGTCCAATCACTTGATGAATCATTAGTTACCTTGGAGAGGAA
GTCGATCCAGATGACACGCAGCTCGTGGCTGACCTTGGGGTGCGCGAGCGCGTCGGAGAA
GCGGCGCACGAACCTGTCCTGGCGGTCGGGCGCCCAGCTGCGGTACCTCTCCCCGGGCTG
CACGAAGTCGTTCTCCTTCTTGATCCTCGTCTTCTCCCTCTTTCCAACCACGGGCCTCGT
CGGCACGGGGAAGCTGGCCGGCTCGGCCTGCCGGAGCGGCGCGTGGCGAGACGGGTAGTA
GTCCACCTCCTCATCGCGGTGCATGAAGTTCATGGCGCCGTCGTAGTGGTTGTTCTTGAA
GCCGCACTTGGGCGCGTTGACGGGGAGCATCAGGTAGTTTGGCCCCAGGCGGTAGCGCTG
CGTGTCGGCGTATGCGAACACCCTGCACTGCAGCATCTTGTCGTCGGAGTAGTAGATCCC
GGGCACGACGAGGCCGGGGCCGAAGGCGAGCTGCTCGTTCTCGTTGAAGAAGTTGTCGAC
GTTGCGGTCGAGCACGAGGCGGCCCACGGGCTGGAGGGGGACGAGGTCCTCTGGCCATGT
CTTGGTGTCGTCGAGCGGGTCGAAGTCGAAGCGGTCCTCTTCGTCGGGGTCGATGACCTG
CACGAAGAGCTTCCACTCGGGGAAGTTGCCGGCGTCGATGGAGTCGTAGAGGTCCTGCGT
GGCGTGGCTGTGGTTCTTGCCGCCAACGAGGGTTGCCTCGTCGTCCATGAGGCAGCTGAC
GCCGCAGGTGGGGCGCCAGTGGAACTTGACGTAGTGGGACTTGCCGGCGCGGGAGACGAA
GGTGTAGGTGTTGACGCCGAAGCCGTCCATGTGGCGGTAGTCGGTGGGGATGCCGACGTC
GTCGAAGAGGAAGAAGAAGGTGTGGAGGCTCTCCGGGTGGTGGGAGAGGAAGTCGAAGAC
GCGCCAGTACTCCTGCACGCAAAATTTCTCATATTTTAGTGAGGTCTGAAATATTTTGAT
TCAAACTGGTTTAAAAATAAATTTAAGTTGTGTTAGAATTCTATTAAAGTCGAGCGAAAT
TAGAAATTTCAAAATCCGAAACAACTCTTTTTGAAATTCCGCATATATTTTGGTGAGGTT
CGAAACTATTTTGTTTCCGAAATAAAATAAAGAAAAAAAGTAAACCATGCCTGCACGTGG
GACTTTGGGTTGGGCTTGAAGGCGTGGATGACGTCGGGGAACTTGATGCCGTCGCGGATG
AAGAAGACGGGGAAGTTGTTGCCGAGCAGGTCCCAGTTGCCCTCGCGCGTGTAAAACTTG
ACGGCGAACCCGCGCGGGTCACGGATGGTCTCCGGCGAGCCGCGCTCGTGGATCACGGTG
GAGAAGCGGACGATGACCGGCGTGCGCGCCCCGGGCGCGCGGAGGAAGTCGGCGCAGGTG
AGGCCGGTGACGTCGTGGGTGCACTCGAAGAAGCCCTTGGCGGAGGCGCCGCGCGCGTGC
ACGACGCGCTCCGGGATGCGCTCCCGCGCGAAGTGGGCGATCTTCTCCAGCAGGTGATAG
TCCTCCAGCAGGATCGGGCCGCGCGGCCCCACCGTGAGCGCCTCGTTGTCGTTCCACACC
GGCTGCCCGGCGTTCGTCGTCGTCGTCTTGGTGTCGAAGCTGCTCGACGGCCGGAACTGC
GCGCCATGCACACCAAACCCACACCCACGCAGAGCGCGTGTCAAAAAGATTATAGTAATA
AGTACTCCCTCCGTTCTGAAATATAAGATCTTTTAAAGTTTTGACTATAGACTACATACG
GAATAAAATGAGTGAATCTACACTCTAAAATATGACTACATACATCTGTATGTAGTATAT
AGTGTAATCTCTAAAAGGTCTCATATTTAGAAACGGAGGGAGTAATTAACACTACAAAAT
CTCTAGTATAATCGACATAGTATCTTTGTGAATGGATTCAGAAGAGCATGCTAAAGATGA
TGATGAATCAGTTAACTATTGGAGTGTGCATGATCTGCTGATGTGTACCTTGCAGGGATC
CATCCTTCCTCGAGTGAGTGAAGTAGCGTAGCTAAGCTGGGGGTGGGGAGTGTCGCTCGC
TCACTCACTCACTCACTCTCACTGCACTGATCTGCTCTGCTTGGAGCTCCATCCTGGTCT
TCTTCTTAAATAACGGCGGGGGCGTGAGGTGGCGTGCCGCTCCGGCTGCCGTGACCACCC
TCTGACAGGTGGGTGGGCCTGCATGGAGACAAGAGAGGATAAGGTGTGGTGGGCCCGCCA
CGTGTGGAGAAGTCTGTAGCTGGGACGGGTGCACCGCATCGACCGATCGTCGCCCCATCG
TCATCTGGTTCCGTGCAAATACAAAAGAGGCTGCTATGCGTGCATCAGTGCATGTGTCTC
CTTCTGGACAATGATCTGTTGCACTCACCCACCGCGACGCAATGCTCGGAACGTAGTGCG
TGTGTGTGTAAAAATCGCGACTTGTGTGCGTAAAAATCGGTGATCAACGTTGGGGTGGAT
AATGATGATCTTGTCTAGCTCACTGGGAAAAAAAAGAGATAAGCTTGTCTATCCGAGGTG
TCCTTACATGTTAATTTATTTTTCAGCTGAGAATTTTTCTGTACCTAAATATATATAGTT
GGAAAGAACTAGATTGGTTTTTCCCAACATAATTATTTAAATACAAAAGGAGTATATTTT
TAGAATTTGTTGAGAAGGTAAACTTTTTAAGCCGCAAAAATGATGCAATTGTTGAGAAAT
CATACAAGCACGTCTTCTATTTTGTTCACCACACAAAAACAATATTGTCACACTCATAAA
ATGTTACTCATTCATTCCATTTTATAATATAAAAAACATTTTTTTACACTAGCATGCAAG
TTTGTTTCATCAATGAATTAGAAAACTCAAATGAACACTGGTAACCAAATTCCTGATAAT
AGCAACAATCGCACGAAGCTCTTCCAAGAACACACAACAAACTTAATAAGCACAGCCGAC
GTTGATTAGTGGCCGCTCCCCACCTTCTCGCTTCACAAAACACGCGGGCACACTGGTGAG
AAAAGAACTACGAATATGGTCTTTTTGTGCTAACTCTTGGTTGGACTAAAATTTGATCGC
GTGTCACAACATTTAATAAACAAAGCACATGGCTATGGTGCTTTGGTGACTCAGTTAGTG
ATAATCAAAACACCTCGCGCCTCTCTGGCTGATTTACTTATACAGATGGAGCCACTTAAT
TATCAGCTGAGAATTAAACAATGCTAACGACTATGCATCTTTCAGAAAGTAGGAAAGCTA
CTTGTCGCCACGTGGCAAAACGTAGTTGTTCAATTACTCTACCCTTATTACTTGTCAATA
TGCCCTCTTTAGCCAAACAAAAAAGCATGGTCGAGGATGTGTAAGGGCTCATTGCTTATT
TGGAGTATATATTTGAACAAAAGCATCATAATTGCTGTTTTTTCATTTGCGCGGCTGAGC
TTGTTTGTACCACAAAGTAATTCATAAATGAGACAAGAAGTGTGTTGCAGATGGAATGCA
TCCTCGTCTATCCTCATGGATTTGTGAGCAGATTTTCTCTACGTACAATGAACCCACTAG
TTCATCAAGTGATATAAGAATGGCTTCTCCTTTTTATATTATGCTAAACATATAGATGAA
TGTTTGCCCTAGATAAATAATTGCAACAGTGGATCGAAAAACTGATTGAAATGAACACTA
GAAACACATCCTCTTGATAAAAAACAACAAAGACATGAAGTTCTTCACACAGGAAACTTC
ATACGCAGGTCATACATTTATCATGGACTCTCACACCTTCTAGATGCTTGAGGGGAAGAG
AACCAATGTAATTATTGACGAAAAGTGCCATCGAGTAAAATTTAGTCACGTATATCAATC
AAAGTACAATAGTTAACAAAGTAGACGGTACTCAATCTGCTTATGACTAGTTAATGATAA
ACAAATCACCACGCGCACCTTTGGTTGATTTTCTTGTACAGATCGAGAGCCACTTAATCA
GGCAAGAATTAATAATGTTATCGGTCTCCCAAATCTCTACACAACTTTAAGAAAAGTTGG
AAAGGTATATTTCCGCTCCGTGCCAAATTTAGTTTTCAAATTACTCTACCTGAATGAATT
ATCAAAACGTCTTCTTCTACTGAACATAAATGCAAGGGGTCAAGGACAAGGGAACATGGC
TTAATATCCACTCCTTTTCTTCGTGAACATGACATATTTCGAGAGGAGAGTAACTAGTAC
TGAATTTAAGCAACGCACCATGCATGAGTAGTGTTAATTTAAGGAGCTTAATTAAATTGA
AGGACAAGTGCGCACATGTCTCGGTGCTAATATTGCAATAGAATTTGTGGACACGCGGAA
ATGAGATTCATATATTATTTCTCTTACAAAACCCTGTTCAGGAATGCTAGGTATATATGA
CTATGTTCATATATAATTTGATTATTCATTGTATTAGGTGTCCGCTTTATTATGTTCTAC
AAATTAATACAGTGAGTATGAGCATCAAATTATCCATGGTTACTGATAACGGTGAAGCTT
GAATCAAATAATAGATGGAGCTATTTTATAAAAAAAGACTACAAAATCCTGAAAGTAAGT
CGCTTGTCAATTTACTCTATGATCGTATGTTTCTCCATTCTCCGAAACAAATATACGATT
GTCCTAGAAACTAGTTAGCGGTATCTATCGATAGAGGAATATTAGTTCAAAAGGAGGTGA
GACACGGCCTATAGGACTTGGACGGTGCACCGAATGGAGCAGCACATGACATGAATAGTG
GAATACAAGCTGTCAAGATCTGAGTTTTGATGCATACACAAGCAAACGTCAATAATGGAG
CAAGCCACCTTTGGATCTTATATGGGGAAGTATCAAGCTAGCAGGTTTCATTTTGTGAAT
GTCACTTCATACATATATGTCTTGTTCAGCTAAAAAAGTAAGTTTTGTTTTACCACTCAT
TCAAAGAGACGACTAATTATTTGGTTCCAATGATGCAGAGGCCGAATGAGTTATCTTTTT
TTGTTTACAATCTTAGAAAAGCTAATGCAGCCCTGAAAAGTAATGGTTGAATACGTACCT
TCTTACTGAAGCATCAAAAAGAAAAGTATGACGAGGCATTACATTGCCATCATTCGACAG
TGAATTGACAGGAATTAGAAAGAAACTAAGGATAGTCGGTATCAAGTAGGCGCACGAGCT
TGACTGAAACTTGACGAGGAACAGGAGAGGTGCTGAGATTCGTCTCAGCCAAAGTGCATC
GCAACAAAACTAAACCCATCCATCTAGATCGATGTTTCCCGCTGTACTGCATGATGTGAT
AAGGTCAGGGAGGCAGGATCAGTAGGACCAATTAGACCCTCAAGGAAAATATCTCCTCCA
CGCTGATTGGTTTATTCCAGTATTTGATTCCATCTAGAACAGTGTACCTGTTTCTCCCAT
TCCACAAGATCAATTTTGCTACAGTTTCTAGAACTATTAATAAGCAGAGGTATAGAAATT
ATGTGTGCAAGTAACAACGAATAGTATATCGTAAACTAGATAGGCATGTGTCAGGCTAAA
TGATGGTGAATCTTGAAGTTGGTGGCGTGTTTCATCTCCTATGGGACGCTCTACTCACTT
GAGTTGTTTGTGCCCGAGTTCTACTATATCAAGCATAGGAGGTTTTTCAAGCTAATTTTA
TTCTACTTTATATAGTTTGTAGAACCTGTCCTCTACATGGTTCATCAAAATTTGTATGTA
AAACTTCCTCAAAACTCAAAAAAAAAAATTACACGTAAAGATTGTTTCCATTTCCAAGTG
ATGATATCCTCTCATAGGATTTGGATTCTTAGTGTTATTTTCCTGTACAAATAATTTGAT
TCACATGACTAGGATCCTGAGGAACATCTTTTTCCTAAGGAATATTTTGCACTTTATTTT
GGACAAAAAAACTCCTTCTACTCGAATGTCATGTTATTATTATTTTTGTTCTTTTCAGAA
AAGAAGCAGATTCCCATAGTTTTCCAATCATGTAGGACTGATGAGGAACGTGATAAGGAT
CTTATGGTTCAAAGGAATTTCATGAATTGTTTTTTGTATCTCGATCCTTAGGATTTTTTA
TCTAGGTCATTTGATTCATATAATTCAACGCTTAGAACCGTAAGGGAAGTTTCCATCAAC
AAAAATCATAATGATCCTTAGGATTTTTATAGCTAGATCATTTGATTCATAGGATTGGAA
GACTTAGGGGATTTTCCTTACGATTCCTTCGTATTTTTCTTTTGGAGGAAATTTTCCATC
AACCAAAAGTTCTTGATACAACTTATTTGGGTTTTTCCATGGTGTCAAACACTTATCATC
CAAATTCATGTTTTTTTTAGTCCTATAGGGTTTAAGAGGACGCGGTACACTCCAATACTA
CATTTATTCTATTCCTGCGCTTTTTGTGATGGGTGATTGATAACTTCTTAAAAATGATGG
TTGTGTGCATCGCAATGATGGAGAGGCTGTGGGTCACCATACCTTTAAACAAAAATATAA
TATTCCTGCATATAGAGATAATCCTTTGACGAAATTTTCAATGCGAGGAGTAAAATTCAA
AAAAAAAATCATACAAATTGAATTTGTCTCGAACATTTATCTGTGAGAAAATCCTGATGT
AAGATTCTTTCCAACTCGAGAACCAAAAAGTCCACAATTCTAGTTTCTTTAAATTCATAT
ATAATATGGTTTGAGAGTCATATGAAACAAAGAGAATATGAACCTATATCTTTTCACATG
TTTGTGTTTGGTGAATCCTAGATATTTTGGACTGGAAGAAGTATGTGTTTTGCTTGATTC
CAATAATTTCGGGTTGGGATCCTCTCCAGTAATGCACCGTGCAGTACCGTCGATCTACTG
TGGACTCTACCCCACAAATTATTCTTTTTTTGCAGGGAATTTCAGAGAGCTTTATTAAGT
AAAAGCATTCGGGGGGCAATCAGCCAGAAGACTGCTGATCAGGAAGCTAGGAGTGGATTC
CAGACAGCTTTCAGTCACATTAAGCGTACATGCACGCTTAGCACACAGGTGTACAGGACC
GTTAGCGGTTTTTATTACATGAGGAATATCAAAAGACAAGAAGTAGCAGAGAGCTCTCTA
ATTACAGCAATGATCGGTGCTACTACCGATCGGTCGATGTAGCTATAGTTCCAGAGGATA
ACTGACTCAAGACAATCGGATTCCAGTTGCTCGTGCAAATAGCCTCGAAGCTTGGCAAAG
ATGACACCCTCGCGCAGCACGAGCACCTCGGCAATGAAAGGATCCGTTATCCCCAAATGG
GGTTTGCACCATGCACCCAGGAATGCTGAGGAAGAGCGGGCTACACCCCCATATCGACAG
TACCATCCCTACTCAATAATTTTACGTGAGACCAGTATTCCTGGACCTACATTAAAGACA
TGCATGCATTAGAATATCGCCGGAAGTCATAAAACAAAATAATCCTATAGTAGTAGAGAA
TGGCGTTTGGAGGCCGAACTTCATGGTGGCCGAAATTTTTGAAAAATTCAAAATTCAAAC
TTTTTTGCTTTCAAAAAAATCTGAAAAATGATATGCAAGTAAGGAAGGATGTTATGTGTA
TGTAAGAAAAAATTTAGGATAATATACCTTGAAATATGATCTGCACAAAAAAGACAAATG
TATGACCTGAAACGATCAATAGTATCATGTGTTAAGAAGTCTTAGATTTGTCTTTTTTGT
ACAACCTTCATTTCAATGTATTTTTTTCTGAAAATTTCCATACATGTGTGTTACGTGTTC
ATTTATCTCTATAGTTTTTTCAGAATTTTTTAAAATGTAANNATATGAATTTTCATGAAA
TTTGAATTTCAAATTTAAAGACCTTCATGGAGGCCGAGCTCCGTATAGTAGCATTCTTTT
TTTTGTTGAGGAGTAAATAATCCTATAGTATCCTTGTTGTGCTTCCAGAAACCTCCACAT
TTTGGATCGGAAGAAGTATGCGGCCTGCTCGATCAATAATTTCACGAGGAGTGATCCATC
TATTCCTATGCCTAAAACAAAGACATGCATGCATGTATTCGTATGGCAGGAACTAAAGTG
GTGAGGCGAAATTAAGTGGAATCGCACAAAAAAGAGGATCTTATCTATTAAAGTACAGAG
GCAGTGCCCTCCATACGGGCGAGCTATGGATCGATGATCGCTAGCCGTTGGATACGCGCT
AGTTAATTAAGGTCCTTGCATGTGTTCATGGCCGTCGTTGTCACGCGTGATGGTCCGTCG
TAGTATCCTGGTCTGGCTACTACTACTACTCCCTCCGTTCCTAGATATAAATCTTTTATG
AAATTTCACTAAGAGTCTACATACAAAGTAAAATGAGTGAATCTATACTNNNNNNNNNNN
CTATATACATCCGTATGTAGTCTGTTAATGAAATCTCTAGAAATACTTATATTTAGAAAC
GGAAGGAGTACTAGTCAGTGCGTCCGCAGCACGCGTCGGACAAAAAAAACATATACGTAC
GTAAAGATGAAAGATGTCGATCGACAACATGTCGTGTCACCACCTAGCTGGCTATTCACT
GCGGCCGGGGACCGCTACTAGGAGTACTTGCTAACTTCCACACGATCGATAATGGCTAAG
AGCATGGTTAATAGTATAGCCAACTGCTGGCTATCTTATAACCCATCTTATAACTAGTTT
GTATAATAGTTAGCTATAAAAAAGAACTACTTTTATCATATATAGCTCACCTTTCATTCT
CATAAAGCATCTAGGAGCACGTGCTAGAGCTAGCTCTTCATGAAGAGCCCGCTTCCCTTC
TCTCTNNNCTTCTCTCTCATCCAACTCAACAAAAATATAGTATTTTAA