morexGenes - Barley RNA-seq Database

Contig contig_1561877
Source Contig contig_1561877
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561877 (6701 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1561877

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11813	2	2259 bp	MLOC_11813.2	Available	Available	LOC_Os01g01689.1, FRAME:-3, EVALUE:0.0, 13101.m00095 protein phosphatidylinositol 3- and 4-kinase family protein, expressed
CDS Structure of MLOC_11813

Contig Sequence (6701 bp)

>contig_1561877 6701 assembly3_WGSMorex_rbca.fasta
TACGAAGTTATTACGTTTCTATGCTATTACTCATTGATATTGGGTGTCGCGGCGATTCGA
ACGTTCGGGGAACCCGAGGGTCCTCTTACGGAGACCTCGCCAAAACTCGTAGATTTGGTC
CATTTTAGCCACTTACTATGGCTATTACTCACTCATTTTGGGTCCTGGAGCGATCCCAAT
GTTCAGGGAATCTCAGGGTCCCGTTATGTTGACCTTGTGAAAACTCACAGATTTGGTACA
TTCTCGCGAGTTTTTATGCTAGCAGTCACTAATTTTGGGTCCCGGGGTGATCCAGACATT
CGGGGAACCCTCGGGTTTGATTACGGGGACCTTGACAAAACTCGCAGATTTGGCCTATTC
TAACGAGTTTTCTATGCTATTACTCATTGATTTTGAGTCCCGGGGCGATCGGAACATTCG
GAGAACTCCATGGTACTCTTTTGGGGACCTCGCAAAAAGCCATAGATTTGGTCCGTTCTG
GCTAGTTTTCTATGTTACTAGTCACTTATTTTGGATCCCAGGGCCATCTGAATGTTCGGG
GAACTTCATGGTCCCATTACGACGCCTCATGAAAATTCACAGATTTGATATATTCTGGCC
AGTTTTGAGTCCCGGGGCGATCCAAACATTCAGGAACCATGGGGTACGGTTATGGGGACC
TCGATAAAACTCACATATTTGGCATGTTTGGCCAAATATTTATGCTATTACTCAATGATT
TTGAGTCCCGGGGCGATCCGAACGTTCGATGAACCCCGGGGTCCCGTTATTGTGACGTCG
TGAAAAGTCGTTGATTTGGTCCATTCTGTCTAGTTTGCTATGCTGTTACTCACTGATTTA
GGATCCTTGGGTGATTCAAACATCCGGGGAACCCCGAGATCTCGTTACACGGACCTCGAT
AGAAATTGCATATTTGACATATTCTGGCCAGTTTTCTATGATATTACTCACTGATTTCGA
GGCCCAGGGCGATCCGAACATTCATGGAACCTCGGGGTCTCGTTACGGCGACCTTGTAAA
CACTCGTATATTTGGTACATTATGTGCAGTTTTCTATGCTATTACACACTGATATTGAGT
CCTAGGGCGATCCGAACATTCGTTCCATTCTGCCTACTTTTATGCTATTACTCACTGGTT
TTGGATCTAGGGGCAATCCGTACATTCCGGAACTCCGGGTTCGGTTATGAGGACCTGGAC
AAAAATCACATATTTGGTAATTTTGGCCAGTTTTTTGCTCTGTTACTCACAGATTTTGAG
TCCCAAGGCGATCTGAATGTTCGGGGAACCTGGGGTCCCATTACGATGACCTTGTGAAGA
CTCGCAAATTTGGTCCATTACGATGACCTGGGGTCTCATCGATATTGGGTGTCGCTGCGA
TTCGAACGTTCGGGGAACTCCGGGGTCCTCTTACGGGGACCTCGCCAAAACTCACAGATT
TGGTCCATTTTAGCCACTTTCTATGTTATTACTCACTCATTTTGGGTCCCGAAGCGATCT
CAATGTTCAGAGAAACCCCAGGATCCCGTTATGGTGACCTTGTGAAAACTCGCAAATTTG
GTACATTCTCGCGAGTTTTTATGCTATCAGTCACTAATTTTGGGTCCTAGGGTGATCCGG
ACATTCGAGGAACCCTCGGGTTCGATTACGGGGACCTTGACAAAACTCGCAAAATTGGCC
TATTCTAGCGAGTTTTCTATGCTATTACTCACTGATTTTGAGTCCTGAGGCTATCGAAAC
ATTTGAGGAACTCCAGGGTCCTCTTTTGGTGACCTCACTAAAACTCGTAGATTTGTCCCA
TTCTGGCTAGTTTTCTGGAACATGAAATGTAGATAGTTAAAGTGGTGGAGTCGGACACGT
TGTATTCTAGACCAAGGCACCATACGTTGTAACCCAAACCCTACACAGGGGAGCTGACGA
CCGGTATCTTTGAGAAGAGCGCGCATAGTCATTACCCTGAGGATGTAGCCACCTCGTTAG
TGAATTATAAAGGTTGCTCATAATGCTATATCCCTATCCACAAAGAATATTCATGTCTTT
GCTAGTGCATTGTGGTTAGTGAATATAAAGGTTGCTCATAATGCTATATCCCTATCCACA
AAGAATATTCATGTCTTTGCTAGTGCATTGTGGTTAGTGAATTATAAAAAAGGCAGTAAG
TAGTCTTTGACAAGCACCTGATTATGCTGAAGAATCCACGTGTATTTCTTCGTTATCGTC
AACACTAGCCATGAGTTGAACATTTCTTCCCCTGTGGACATCCTCCACGCAAAAGGCCCA
TCGATATACAATCACAAAGGGTATATATACAACAATTATATGTGGACCTACAGGGCCCAT
GTTGATGACAAGTCCCTCTCCCGCCTTGGCACAAGAACAAGCACGAGAGGCGCCGAAAGC
AAAAGCTTCTCTAGCGGTCACAAAATCGCTTTTACGGCGGGTTCGGAATCTCCATCTATG
TTCCTCACAGGCGCTTTACAGCCTTTGCGCACAAAAACAGGCGCCAGGCACCAAAAGTAA
AACCTCCTCTAGCACTAGCAGTCACAAAACCGCCTTTGCTGCACTGCACTGCAGGCCCAA
ATTCTCCATCTATCTTCTTTCTTATGGGCGGCGCTTTACAGCCAAGGCGCCCACCCTGGG
AACATCTGGCACAAGCGATCAGCGTCTACCGCGTCCTGTATGAGCTGCTGGACCTGCCCC
TCTACGCTCCTCATCTCGCCATCCTCGTACCCATCCAGCTTCTGCTTGACACGGAGTATG
GCACGGGCTGCGTCCTTGTTGCCCTCGCACGCCTCTTGGGAGTCGTCCAGGCACGAATCA
TTGTATTCAGTTTCCTGAAAAATCAAAAGTTACATTACTTCGATGGTTTGCTGCAAGACC
CCTCCCCTCTTGGGAATTCTATGTCTCTCGGAAGGGAAATTAATGTTCAAACAAAGATCG
TCTGGTTACCTTCTGACGCTGTAAAGCTTTCAGTGGCGAAAGGGCCCATTTATAAAGAGG
GTCATGGATGAAGACCTGACATGTTAGGTCAATCATCAGGACAAAATGTAATGCCGACTT
GCCTGATGAATGGATTTATAAAAAAAACAAAAATAAAACTTTTGGCAACAGACAGACATA
CTTCAATAATGGTGAGCAATGCCTCTTTATTTTCTCTCATAACAGACAGGGTCTTCTCAC
AGCATCTTTTGAATACGCCTTCAGTGCCAGTAACTCCCATACCGTCTATGATATCCCTTG
TCAGCCGAAATGGAACCTGAAAGAAAGCACAGGTGGAAACTCAATTCAGGCTATCATTTC
TTATAGGCTTCATGAACATAGTTGGCCTCAAGAAGGAAACTAGCAGGCAAACATTGCTAT
GGTATGGTTTCGATCACGTACCCGTTCAGGTGTTTTAAGCATGAGGCCCTGCTCAAATGC
GACACCAAGATCAATGTGCACAACCTCAGCTGTGTCTTCATCAATGAGAATGTTCATGGA
ATGGCGATCTCCAAGCCCAACAATATATCCCACCTGAACCATCAAAATTAGTAACCGGTA
ACATGTTGAACTTTGGTAACAATGTTGACTGGCTAAAATGAAAGTTACCATTGAGCTTGC
TGCCACACTTCTTGTGTACGCAAGTCTACTTTGGAACCAGTCTGCGGGCTGCAGGAATCT
CTCAATGAAGAAGTGGTGCATCACAGGCCTGGTTATTGCAGGACAAGGGAAAAGGTAAAG
AAAAATGTAAGCAAAACAGACAACTTTACTTCTTCTGCATGTTTCAGTAAATGAAAATAA
GAGATCAGCAAAAAAAACCTAAAGTTGTCGCAGATTTTGAAAAACGCCTTCCTTTTATCT
TTCTCCTACAAAACACAAGTGCTTTCAGAAAGAAGACTAATCATCGTTTATTAGAATATG
TAAAAGTGAAAGCTCCAGATATGAACATACACACGCCAGGTGCTCTCTGCATTGCATAAA
TGTCCAGTCTCCAGTTCCATATCGTGCATGCGCTCCGCCAATTCTATTGCTGTCCGAACC
AATGAAAATACGGGATTTTTTAGGAATCAAAAATACGTTTAACTAATAAAAATCATTCAT
AAATTTGAATTTATTTTACATATAACAACTGGAATCATGAACAGAATTACCTGTCTAAGA
GATAGTCGCCAAGCGGGATAGTCCTATTTACCCATTCAACGACACCAGCACTTGGGGTGA
AAGGAACAACCTTGAGAAAGTAGCTAGATTTGTCACACGTTGCAAAATAGGCATGGAGAA
ACTTAAGAGAAAGGCATTCACTCCTACATTATATGTGCGTATCCGCAATCTCCTTTCCGA
AGTATCTCTGTGATTTTGCAAGAACATATTTACCAAACTGAAAAATTGCTCCATTACCTG
AAATTTACACAAGACAGCGTTTACTCATACGGTGTATTATGATATTCACAGGCAACTATA
GCTTTCGCCAGAGTTAAGTCCTGATTTAAGTGTCAAACCCTGTATGTCTAATACATTGTC
AAACTTCTCAATAAAATGAAAGAGAAGAACATACAGCATCTTGTCGCAGGTCATCATTTC
CAGACTTTGCAAGTTGACGGTATCTGTTACCATCTGAGCCAATACACTGAATAACTTTTG
GAGCATTAATTCCGTTCATTATACTGTCATGGAGGAAGACTTCCAACAGTCAATAAAGAC
CAAAAACAGTAAATCCTCGGGTACAAACAATGTCTTAAACCAAAACCCAACTTACGTAAT
AGAATCCACCAGCCCACTGAAATGTGGAAAGGTACCTTCTTCATATCGACAATTAGGGTC
AACTGGAATAGTAGCAGTCACAACAGGAACCTGATGAATGAAATCAAACAAGGAAACAAA
GAAGCAGTGTAGTGAAATTTCCATAAGTCATTTAAAACACTCACGGTTGAGAACCCAGAG
ACTCGGGTTATTAATCAAGGAAACTCAGAAGGTCCCGCAAAGAAAAGACTGCTTATTTTC
CTAACCATTTGGTAATTTTTTCAGCTGGAAGCGACAGAAGGAATTTTTAGAAGTAAATTT
CACAAAAAAGTACCTTCGCAAGTTCAAGCTGGCAAATGCTGCGGAACTCCCTGGGTAGTG
AGATTTTTTTGTTTGTGTCCTGAAAACCAGATGTACAAAAAGAATATGTCAGCATGGAGA
ATGTATGTATACAAATCCCCTACAAGCCGTTATTTGAACAGGTAACTTACCTCCTTCCTA
GTCTCTAGTTCCGCTAACCTAATGTAGATCTCAACCATTTGCTTCATCTATAAGATGTGG
GGATGAGCATCACGAAGAATATATTACATGACCTCCTTCAGGGGTAAGAACATCGCGATA
AAATGATGGTAGTAAGAAGTGGCAAACCTGACGAATCAAAGCCCCATGAAACGAAGATAG
CTCCTTTAATAGATTCTCAGCAGCAAGCTTCTTGTCCATATCTACAACAAAAGAACTTCT
ACTTCTTTGCTTGTCTTTGACACGGTCACCATTTGCTAGAGCCAAAAGCTGAGGCCAAAG
AAAGACACAGACTTAAAACAGCAAAAGAGTGTTCTACTGGCCTGAAAAATCTGAGATTTA
ATAACTAAAATGTGTTCGAGTTGCTCCATACATCAACTAGGTCTAATGTATAAAAGTCAG
CTGGGGTTCTCCTGAAACAATGTTGTGTTGGTATTTGTATTAGTTGATACAGTACTGACC
ATGTTATACGATTGTTTTACATACATTCAGCATTTGGCTGACTAGATCTGGGTTCACTAT
TCAATATACCATAGGTTCAACACTAAAATAATAAGAATGGTATGAAAACCATGAAAATAG
ACCTTGATCGTAATTCTTCCAATACATAGAAGACTGTAACTTTAATACCTGACATATTGT
ATGATATGGATGATCAATGGCCATTTTCTTCAAGAGAGAAGCTAATGCATTCTGCCAGGG
AAAACAATGATATTACTTGAGAGGTTCATATTCATGTTTACTCGTGGAAGCAACATATGA
CAGTTCTCAATGTTGTGCATACCTGGAAGTTTGTTGACCCCTGAGCATCTTTTGAGCTCC
CAAGTCTAGAAGCAATCTGGTAGACCAATGGTATGAACTTGTAGGTTTGTACCTATCGAG
CCAAAAAAAAAAAAAAGATTTTTACCATGGAAGGGAAAAAAGTACCAGCGGGAATAATGA
AATGGAGCTAAAAAGGATGACCTCTTTTGTTGTTTTAATCATTGAGTCCACAACTTGTTT
CCTTGAGAAGAGATTAAACCATAGGGAGACCAACCGGAAAACCTGAATGTAAGATGTTTG
ACACTGACATAACCAACAGTGTCCTTAAGAACATAACAGAGGATTGAAGGTAAACCGTTT
TGCTGTATGAAACACATTGAGACTGAAAGAACAAGAACATTCCCAGCAAATATATTGCAT
ACCACTTGTAGGTCATATTTGCCACCAACAACTAGGGAACGTTGGTACCCCTCAAGTGCT
AGACTCAAGAACTCGTCTCGATCATCCTGGTAAAAAGGTCCAAGTTAATAAAATGCTCAA
AACAAACTGAGAAGTTTAATATTGCATGGAATGCATTGTTAGAGTATATATAATATAGCC
ATGTACCTCTTCGTATTTATCCCATTGTATAAGGGGTTTTCTGCATATAGTCCACACATG
TACATGTATATATATCGGCCTATGGCCTCAGGGGAATACAA