morexGenes - Barley RNA-seq Database

Contig contig_1561804

Source Contig contig_1561804

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1561804 (2431 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1561804

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11774	1	970 bp	AK369830	Available	Available	None

CDS Structure of MLOC_11774

Contig Sequence (2431 bp)

>contig_1561804 2431 assembly3_WGSMorex_rbca.fasta
TAGGTAATTATCTTTAAGTTTACAAGGGTAATAGGTCATTAGTAATCCATAATCTGGTTT
TAGCTGGGATAGAGTAGATTATGAGTTTTTAATAATTTGGTCATCTAATTTTAAAATCTA
CAACATAAACTGTCCTGTTTGGAAACATAATAGATTATAAAACCAGATTATATAATCTGT
GTGGTTTCAAACAGGGCCTTTCCTAGGAAATGAGACGGGGAAGCGAATATTGCCTGGTAC
TTCAATATTACTTACATGCAGACAGAGAACGAATAATCTATACCTATTAATAAAAAAATA
TGTATTTCTTAACCCGTCATGCTATTTTATAGAAACTCTCCTGATGTTTCTAACATTAAA
CCCGCGGTACATATCAAATGTCTTTTTCAAATACTCATATCTTCTAAACCGTAACTTTAA
ATTTAACATGTTATATATGGATTTTGATTAAAAAATATGTAGAATTTAAATATGATGTTA
CTTTTCGTGTTAACCATTTTAAAAATACTATCTAGGATGCAATCTTAATCAATAATGCAT
TGCCCGTCCTTTTTTCATACCGGTACCGATTCGGATTGTTGATGAACATCTCAGCAAAAT
CAGGATTAGAGATGAAATTGAAGCTCACTTGACCGTTTCTTTGTACATATTAAATCTACA
TGCAAGCCGTATTTAAATAAAAGACCTGTGGAATTTTGAAATGTGTTTTTATAGGCTAAC
ATCATCTTTGTTTGGGTCGTAGCTACAAATACTTAAATTATAGATCACTTTTTATAAATT
AAGATTATGTGGTATTTTTTTTCCGTTGCAAGCCCTTTTGCTATATATATATATATATCC
AAATAAAAAAATCTTGTAACAGTGAAGGAGAAAGTATGTATTACTAGTGCAAGTTTTGTC
TCACCTGTCAGACAACTTGCAATGGAAGAGGGTCGTGTTGATCCATGTCCAATGCATCGT
GTTTAGGGAGTTGCTTAGTAAAACAGTGGGTTTGTAAAACTTAGCAAAATGTAGTTTCGT
GGAATATATATTTGGAATTATAGACGCTGATATTTTTCAATATACATTTGGTCAAAACTA
GCAAAATTTGATCTGATATAAAGCCAGAGGGAGTACAACTTGTTTTTTTAGTTACTTTGT
AAAACTTGTACTGTGTACTGTATTGGTTCCCACCATCATAAAAAAAGAGAGAAGCAAAAC
TCTGTCCGGTTTTCACTGAAAAATAAAATTTAGCATAAAGACAGTGTGAGCTAAAAGGGA
GCAAAGGGCCAGCTTCCCTGTTCCAGTCACCACAGGTCCGAGCAACTGCCGGGCACGTCT
TCTCCACCCTACAGGCCACAGAGACCGTACGTGCAGCAGGTTTGCTCGCTCGACGGCGCA
AGACATGACGACGACGAAATTTTCCCACAGAAAGAGGAGCACTGGATATTTACATGCCCT
AGTCATCTACGGAGTAGTCTGCAGCACAGAGACGGGCTCAAACACTACCAAGTTTTGATC
TAACAAAGTACACAACGCACGTCGTATACCCCAAATTTCCTGGGTAGCTCCATCCCTCGT
CTTCCTCGCACCCCATTTACTGAAGTCCGCAACACATCCAACCACAAACTTCTGCGCAAT
CTCTACAACAGCGCAGGTTTCCTGGTTGCATGCGTAGGAATTCCATGAACAACCCTTCAC
GGTCACGGTGGAACTGCAGCCTCAGAAGTCCAGAGGTGGCGTTTCCTGGTACATTGGCAG
AATATATGTCAATACTGCCGTCGGAGCTGAACTAGTTAGACCTGAACACCAACTAAGAAA
CAAAATAGACCTGAACAATTACACCGAATACAAGGAGAACCTAATCTAGCTGTATTTCAA
TCAGTCGCCAATAAAATATATGTTTGAAGGCCGTAAATAATCATCTGCGAGGAATTATGT
CCACAAAAACACCAACTAAGCTCATAGTATACACTGATAGCACATTCTTTTTACACATGT
ATTAGACCAATATTTATCTTCACAATCTTAATCACATCGAAAATATGACCAGATTCTGTG
ATAAAAGTAAGATATACTCCCTCCGTTCCTANNNNTAAGTCTTTTTAGATATTCCACTAC
GGACTACATACGGAATAAAATGAGTGAATCCACACTCTAAAGTTTATTCCGTAAGTAGTC
CGTAGCTAAATATAAGTCTTTTTAGATATTCCACTATGGACTACATACAGAATAAAATGA
GTGAATCCACACTCTAAAGTTTATTCCGTATGTAGTCCGTAGTGGAATCTCTAAAAAGAC
CTGTATTTAGCAATGGAGAAAGTAATATATACAAGTACATAAGCAATAATCTCACTCAGT
TATGGCATAATATAAAATGCATGACTGTGATATGACCAAAATAAGAGAGATTTTTTTTTT
TTTTGGGGGGGGGGGGGCAATTTTAAACATG