morexGenes - Barley RNA-seq Database

Contig contig_1561783
Source Contig contig_1561783
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561783 (9183 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1561783

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11764	1	3184 bp	MLOC_11764.1	Available	Available	LOC_Os05g28510.4, FRAME:+1, EVALUE:0.0, 13105.m02937 protein importin subunit beta, putative, expressed
CDS Structure of MLOC_11764

Contig Sequence (9183 bp)

>contig_1561783 9183 assembly3_WGSMorex_rbca.fasta
TTGAAATCTCCACTAAGATGGACGTACGATAGCGCCACATATCGGAACCATGCCAAAATT
TGCCATGTCAACCTTTGCGTTTGATCTCCATACCTTACCATCTACTTCACACTTGCATGT
TTTTCTTTCTGCTGCAATACTCTTAGATATGCANNNNTAGGGTGTACTTGACTAGTCTTA
ATTGCTAAAACTGACCCACATTTAAAATTGGGAAAATGCTAAGTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGACATACTTTCGATCCTACATCATAAGTAAACATCAT
TAATAGATCACAGCCAAAAAAAATCATCAAGGATTTACAAAAGGAATCACCACAAGAATG
CAACCAAGTTATCAAGCATGATGGCATAAGTTCACAACAAAACTTAGCAAGACAGTACGA
TAAGAATTCCCACAAGATTGCAACAAAGTTATTAGGCTTTATAGAGCCTATGCCACATTG
GAAATAAAGAACAAATTCTTATGGCATAAATAAAGAGCATAAGCTGGCAGCAAAAAAGTT
ATCAAAGAATAATTACCACAAATAGTGCTAAAAAAACCTAGAATAGCATGAATTTTTTTA
TAGGGGTTACGTGCACACTTGCTGACTGCAGCTTGGGGCAACATGAACATGCATAAACTT
ATCAAGGCCTTCCACACCACCAAACAGACAAAAATTCATTCCAAACTCGGGCTTCAACTG
AAAAAAATGAAGTGATAAGTCAGGTAAGTAACAAGAAAAAGAAAGAAAGAAAAATACAGT
TGCATGCAGTGTGCGACCTAAAACCTAAAATAATATAGATAAATTACCCGTAGTTCCCGA
AAAGAAATTTTGTCCGCCTGAACATCCTTATTAAGGACACGAGTTATCACCTCATTCGTC
CATACATTGATAGGGAAAGGCCCAACAGGCAATACAATGCCGAGACCACAAAGGTCAATC
GCATGAACGTACAATAGCTGATAAGAAAGATACAAGAGTCGTGATAAACACAACCGACAA
CAAATAAATATGAAAAGATGAAAAATGACAAAAAATAAAGCAAATGAAAGTGGCATCACT
TACATTGCAAAAAAGGAGGCAACCCTTGGTAGGCTTGCGAGTTAGAAGCACCTTGTGTAG
TTCATCCGCAATGAATTTGGACAAGTTGAGATTTTTAACATCGTCAATGTCCCGCTGCAA
GTTGAAAACAAAAAAGGGAAATTTAATCGAATGGAACACAAAAAATATGAAAGTTACCAC
ACTACTCCCTCTATCCATATATACAGGGCCTAAAGGCTAATCTTGACCATATGTTAGAGG
AATAATATATGACATGCAAGCTACACAAAGCATATTCTCAAATTCGTATGTGAAAGGAGC
TTCCAATGATATAATCTTCACATTCTACATTTCATATACTATTAATCTTATCAATAGTCA
AAGGCAATCTCGAAAAATGCATTAGACCCTATATATATATGGATGGAGGGAGTAACATAC
AATGAAGTTATCAGGCACACAAGAAATAATATGACATAATTACAACACCACTTACCAACA
TAGCATACCACATAGGGCTGACTTTGTTGAAAGTGGTCGGGGCAATGATTGTATTGCCCG
CAAGCAAAAGCCACATCCGCTTGAAAGTAGTGTCAGCGTTATCAGAACCCTTAATGGGAT
CGACAAGATCAGTCATATTAGGGGCATATCCGAGTTCACCAAACAACTCAAGCCCTAACT
CAATATTAGCTTTGGTAGCAATGTTGTAAGGAACATCCTTCCCTCCACGCAACACGCCCA
TAACACGATGCACATATTCTTCATTAACAGGAAGCCTACCCCGCCCTGGTACGACTACCT
CACGGGAATCAGGATCGTACAAGTCGGCAAGCCACACATTGAGACCATTGAAGAGATGGT
CACACTTGATATTCTGAAGGCTTGTGAAGTCCATCTCGTCAATGGCAACCTGCGTGTCAT
CCCTCATGTCTTTTCATGCAAGCAGAAGTGAACTAGGTGAGTCTCTCTTGCGCGAAGGCG
GAGGAGGGCGCTTCATTTTTTTGGATGAACGTCGTCAATTCCATCACTACCTCCTTTGCG
CTTCCTCGACATTGTGTCCGTGTCACATAAGAAAAAAAGATGGCGAATGAAACCAATTAG
ATGACCTATGAACTATCCCAAGTAGTAGAAACAATTATAGTCTGGTGTTTTCCAAGGATA
AAACTCCGCCTATATTGTCTCAATATAGCCGGTCCCAAGCCCGGATAAAGGAGGATGATT
ATGATAGGCTTGGTGAGTGAACATGGAAACTCTATTTGCAAGGAAAATATACCACTTGGT
AATAAAAGCACGATTGACACTACGTTAAGAAATTTAAAAATTACACGCCCTTAATAAATT
AAGCACTATTACCATGATTAGAATTCAAAAGCACGAAGCACTTACAAAACAAAAGCACCA
CACATATGACAACTAATAACACCGTGACCCTCATAAATAAAGCAATAAGCACATGATAAT
TCAGCCGAGATGCTGCTGGTAAGCGCAAACAACATCATCTTTGAAGACTTAGTACCATGA
TAATTACAGAGATGTTACATGGTAACTCAATCACAATCGTGTTGGTAGGTACAACAATTA
CCAACCCAATGCACTTTTAGGCACAAAACAATAACAGTGAAAAAATTGCAGTGTTAAACA
CTCGTAATTTTAGCACAATGTCACTCGTAAATGCAATACGAAAGGAAAAAACATAACCAA
TAGAACAACAACACTGATAACTCAAGCAATGTAAACATGGTAATTAGAGCATCAGAAGCG
TAATTAGAGCATCACAACACTTAATCGATGAACATAACACAAAAAAAATCAAACATAAGA
AAAGTGTGAAAATCCACAACAACTAATGCACATAATAAAATATGCAGCCACTAATACACA
TCTTAAAGTCAACATCCACGAAGTCAACATCACGAACCAAAGCAAAATCCGCACAGAACA
AACCAAAGGCGGTCTGCCACGGAAACCTAACCACCACCGACCCGTCGACAAATTTCGCAG
AAATTGAACCACATTTCGAGCATACATCTCGAACTACATCTAGAAGTCGACCTATTCTAA
CCTAATGCCAACACCAATCGGCTGGATTTGGAGGGAATTCGCACCAAAATCCGCGGTGGA
ACAGAGCGTCGGAGGAACAGGGAGATAGAGGAGTTGGGGAATGCCATTCCCCACCGCAGA
ATCACACGTCATCCGTCGAGAAACGGACCGCGCCGCCACCAGGAACCGCCGCGGACGAGT
GAGAGGAGCCCGAGTGGCAACGACAACACGAGACAGGCAAGGAAAACCGCAACAAAGGAG
AAGAGGGGAGTGGAAACCGTGGGATTGGGTGGAGATGGAGTGGAAATAGGGACCACCTGT
CATCGACGCTAGAAAAATAGTAAAAACTATCGCCACTACTACCGCGATGCGACCGAAACA
TCCCATGCAACGCTCATCATTGGATTGAATATGAACGCCATCGGACTAATGCGGATCTGT
AGACAAGAATTAGGTCGACTCAGAAATAGCAAATCGATCTTTATTATATTTGAGATGCTT
TATGCTCCCGATGAACTTTTATAATAGATCTAATTCTTTTTTTTTAAAAGCAACTATTAT
TATTTTTTAATTTTAAGACAACCCCGCGAAGCTTTATTAAATCGTCACAACATTTACACG
GGCGAAAGGAAGTTCATCGGGTTGACCTAACCACACATGGCGAAGCAATTACTCTTGTGA
ATGAATAAATCAGGTTTGAACCGTAAAAAAAGGGTGTGTTTTAGCGTGACGAGTTAGATG
GGCCAGATGATCTGGGCCACCTCTTGAGCCAGTCCTTCGGTTGCGCCAGTTGTTTGTCCA
TGGCCCATATGCAAAAAATATAGCCGACCACGGAAAACTCTATTTGCCGCGTTCTTTGGC
AAACAGTCGGGGTTACGCAGATGCAATCGATCGAGCTTTAGTGGATGGGCCGGCGTGTTA
AGCGTTCCAACCATACCGGTTTGGGATCTTCTATAAATGTTCGTAGACAATTTTTTCCGG
TTCTGGGAACATTCTAGAAGGTTCTTGAACTAGTTTTTTTTTTTGTTTTCCATTTTTGAT
TTTTGTTTTTTCTTCCATTTTTTTCCTTTTTTCTTTTCTTTCTTCTTTCTTTTTTCCTTT
TGATATTTTTTCTATTTTCAACAAATGTTTCAGAAATTTTTAAAATTAATTTTTTCAGAT
TTTGTTCGATTTTTCAGAATTGTTCTTGTTTTCATTTTGTTCTTCAGGAATTTCATACAA
GTGTAGAATTTTAAAAATTGTTCTATTATTTACAAAAAAACTGTTCAGAATTTCAAAAGG
TGTTAATTTTTTATTTGTTTCCATAAAATGAAAATGTTCAGTTTCAAAAATATGTTCCCG
TTTTCAAAATTTGTTCAAAAATCCTAAAAATATTCATGTTTTTAAAATATTTTCAAAAAT
ACAAAAAAATAACGTTTTATTTTTTTCATGAGTTAGAAATTTCTCAGGAATTCTAAAAAA
TGTTCCCATTTTCGAAAATTCTTCTGAAAATTCGAAGAATGTTCCTGTTTGCAAAATTTG
TTCGTGAATTCAGAAAATTTACACGTTTTCCAATTTTATTCACATAGTCAGAAAAAACTG
GGAATTTTATAAAATGTTCCTGTTTTCCAAATTTGTTCAAAAATTTAATATATCTTCATG
TTTCGAAATTTGTTCACAAATTAAGAGATGTTTGTCCCAGGCGATCGTTTGTCGCAGAGA
GCGGCATATAGGAGGTCTCGACCACCGCCCCTCCTTTCTCCCCCGTCCACGGCATATAGG
AGGCAACCGAGCTCCAAAGCAAACCCCGCGCCCAAAATCCCCAAACCCTAACCGCCCCAC
CACCCGACCCGGCGGAGCAGCAGCTCCCCAGCCGACCGGCGGCAACCGGACCCAGCGACG
AAAGCTGCAGGGACGGCAGCGGCGACCTGCGGAATATCGGGGCAGGCGGCACACGGTCGC
TGAAAAGCGAGTGCGCGAGCGGCCGAGGAGCAGTGAACGCGGCCCCCAAAGAGACTCGCG
ACGCACCGGTACAGTTAAGGTACCTATGGCCGAATGCCCGCTTCTCTAAATTGGATCCCA
TCTCCATTGCTTGCCCAATCTGTCAGACACCGAGCATTTTTGTGAAAATCGAATGCTAAA
TTCTTCACCAAACAATAGTGATTTTGGATTTTTTTTGTTAACAAGGGAAGCAAGTGTAGG
AAAACCTAGCAGTTATAGTGTTTTCAAGTAGCTCCATAAGAAAAGAAAGCTTAATCAAGA
TGCAACCACTTGTAGAATAAGGGTGGGCCGGGTCACACTGGCCCTCAAGGATTGTTTGAC
TGAAGCAGACGACCTAAATTTCGTCAGTTGTGTAAAATGCAAATGCCGTGGGCGACACTG
TAGCTTCCAAAATAATAAGAGGTGGAGGAAACTGACTGGGGTTCAAATGACTTGTGTTGT
GTGTGCTAAAACCTAAAATTGGCAGCTGCTACAGGGGAGTGTTGATGGATGCCAGTTTTA
TGTTAATTCAATTAATATGTAATTCCATTTGCTGAGAATGTAAAAAAATCTGTTTGTTTG
ATGTTTGTTAGGGAATTGGAATACAGCCATGGATATCACTCAGATTCTCCTAGCCGCGCA
ATCTCCGGACGGTAACCTTCGGTCGGTAGCAGAAGGCAGCCTTAAGCTGTTCCAGGAGCA
GAATCTTCCCAGGTTCCTGCTCTCCTTATCAGTGGAGCTCTCGAATGACGAAAGGCCGCC
AGAATCTAGAAGACTTGCTGGCATCATCCTTAAGAATTTGTTGGATGCCAAGGATTGTTC
AAGGAAGGAGCTACTTGCTCAGCAATGGGTCAGCCTGGACTTGTCGATCAAATCAAGAAT
TAAGGAATCGTTGCTGCTAACACTAGGATCTTCGGTGCCTGATGCAAGGCAGGCCTCATC
ACAGGTTATTGCAAAGGTTGCCTCCATTGAGATGCCCCGTCGTGAATGGCAAGACCTCAT
TGCCAAGTTATTGGGAAATATGACACAGCAGGGTGCATCTGCGCCACTGAAGCAAGCAAC
TCTAGAGGCGCTGGGGTATGTCTGCGAGGAGATTTCTCCTGAGCACTTGGAGCAGGATCA
AGTCAATGCTGTTCTGACTGCTGTGGTCCAGGGAATGAACCAGACAGAGCTAAGTGTTGA
AGTCCGTCTTTCAGCAGTTAAAGCTCTATATAACGCTCTTTATTTTGCTGATAGCAACTT
TGCAAATGAGATGGAGAGGAACTATATATTGAAGGTAATATGTGAGACTGCTGTATCTAA
TGAAGTGGAGATCAGACAGGCAGCTTTTGAATGCCTTGTTGCAATTGCATCCATATATTA
TATGCACTTGGAACCTTATATGCAAACTGTATTTAACCTGACGTCTAACACTGTCAAAGG
AGATGAGGAATCAGTTGCACTTCAAGCTATTGAATTCTGGAGCACAATTTGTGATGAAGA
GATTCAACTCCAAGAAGAATATGAGGGATATGACGATGCCAACTCTAGTGCAAATTTTCG
CTTTATAGAAAAGGCACTCTCTTCACTTGTTCCAATGCTGCTCGAAACTCTGTTGAAGCA
AGAGGAAGATGAAGAGCAAGATGACAATGTGTGGAACATTTCCATGAGTGGTGGGACGTG
CCTTGGACTCATCGCTAAAGCCGTCGGTGACGCGATTGTCCCTCTTGTCATGCCATTTGT
TGAGGCTAACATCACAAATCCAGATTGGCATTGTCGTGAGGCAGCTACTTTTGCATTTGG
TTCTATCCTTGATGGTCCTTCTCTTCCGAAACTTGCTCCACTGGTACATGCTGGACTTAA
TTTCCTGCTCAATGCAATGAAAGATCCCAACAGCCAGGTAAAAGGCACCACTGCATGGAC
TCTTGGGCGTGTGTTTGAATTTTTGCATTCTCCAACCAGTGGGAATCCGATTGTAACAAG
TGGAAACCTTACGCGTATCATGACAGTATTGCTGGAGAGTAGTAAGGATGTTCCAAATGT
GGCTGAGAAAGTCTGTGGAGCTATATATTTTCTTGCTCAAGGTTATGAAAATACAGTAGA
TTCAGTCTCTTCTGTGCTTACACCTTATCTTCCTAGTGTCATCACCGCTCTCCTTTCTGC
TTCAGACTGTGCTGACACGGCCCATTTTAGGCTTCGTTCATCTGCTTATGAAGCGTTGAA
TGAGATTGTGAGAGTCACCAACATAGATGAAACTTCAAGCATTATAGGCCAGTTATTGCA
GGAGGTCATGAGAAGATTGAACTTGACATTTGATCTTGAAATATTTTCATCAGGCGACAA
GGAGAACCAGAGTGACCTGCAGGCTTTGCTGTGTGGTGTACTGCAGGTCATCGTCCCGAA
ACTGAGCAACTCAGATGCGGAGTCCATTATCACCCAGAATGCTGATCAGTTGATGTTTCT
ATTTCTCCGTGTTTTTGCTTGCCACAGTTCTACTGTACATGAAGAAGCAATGCTTGCCAT
TGGTGTTCTGGCTGATGCCATTGGTCCAGATTTTGTTAAATATATGCCGGAGTTTTTCAA
GTACCTTGAAGCAGGCTTGCACAATCATGAAGAATACCAAGTATGCTCCATTTCTGTTGG
AGTGGTGGGTGACATTTGCCGTACCCTAGAAGATAAAGTGTTGCCATTCTGTGATGGAAT
TATGACTGTTCTCCTCAAGGATCTTTCAAATCCAACGCTCAACCGGTCTGTCAAACCTCC
CATTTTCTCATGCTTTGGAGACATTGCTCTTGCCATTGGCGGGAATTTTGAGAAATACCT
GCCATATGCCATACCAATGCTTCAAGGAGCTGCTGAGCTTGTTGCTGTTTTGGATCAAAG
TGATGATGATATGGTTCACTATGGTAATCAGCTCAGAAGGGGAATATTTGAGGCTTACTC
TGGCATATTACAGGGTATAAAAGGCCCAAAAGCTCAGCTGATGGTACCTTGTGCAACCCA
CCTATTGCAGTTCACGGAAGCTGTCTACAAGGATGGGAGCAGGTGCACATCATTTTCGTT
GCCATTTTCTTGTTATAATATGAGTGTTTGTTCCTGTTTCTTACCAGTATATGCATATGT
CTGCTTTCAGGGATGAGAGTGTGACAAAGGCTGCAGTGGCAGTCCTTGGTGATCTTGCGG
ATACACTTGGCCCGGTATCAAAAGATTTGTTCAGGAGCCACCTCTTCCATGTCGAGTTCT
TCAGGGAGTGCCTTGATTCAGACGAAGAAGTCAGGGAGACTGCATCGTGGGCGCAGGGAA
TGATAAACCAAGCAGTGGTCGCGTGACATGAGAAATCATTTTCTACCGTTGGTTGTGGTG
GAGGTTTCTTCTTGTGGATCTGTAAAGTCCATTTGCCACAGATGAATGGAAGAACTCCAA
TATGTTGTAGTGTTAGCAGTAGGGGATCCTTGCCATGTGTTCCTTTTGTGATGTGTTCGA
CTTGAACTGCTAAATTTATTAACATGTTCTGACTTGTTGCTTATCCATGCGATGCTGCCT
ATGTTACTGAGTACTTGTCTTTTTTTTTTGTCAAATCGTTTCATGTTAGTACCTGATTAA
TCCTTTTTGTTGATATATGTTATATTGCAAAGTACAGTGTTATTTTCAATATGGTTTCAT
GCTACCTGATTAATCCTTGTTGTTGCTATATACGACCTGCCGCATTATTGGCATGAATTA
TGCCCATGTTGTCATGTCTGAATTCTTTCGATGGAGTTTATTTTGAACATATCATTTAGT
AACAACACTGTGCTGGAGAAACATCTTTGCAGAGGGCTTTACTCAGGTGACTGGTTATAT
GGCGTACGGCGCAAGCGCCATTGCATTGTGGGTACACGTCACTGGTCAAACACCTTCTCC
ATGCCACCACCATGACTCAACCCAATTTACCTGACCCGAGAAATCTTTTCTCAGGCCTTT
TATTCTCAAATGTACTTATTTATTCATTTGTTTGTTTAGGTAGGGCTGACTACCTGATGT
AGTAACCAACCTCTTCAGACTTGAACTATTTTTTGTTTGTGTAGGTGCTGGAATCTTGTC
GAGGGATGTCGGCGAAGTCAAATGCATCAAGGACGGAGATGATCAGCTTCTTGTGAAGGA
TGA