Contig Data
morexGenes
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Map Locations of contig_1561744 (6182 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1561744

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11744 1 856 bp AK375921 Available Available None
MLOC_11743 5 3640 bp MLOC_11743.1 Available Available LOC_Os02g03530.1, FRAME:+2, EVALUE:0.0, 13102.m00338 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_11744






CDS Structure of MLOC_11743






Contig Sequence (6182 bp)

>contig_1561744 6182 assembly3_WGSMorex_rbca.fasta
CGCCGCCGCCGCCGCCGCTGCCGCAGCTCTCCCCGCTGCTCCCCCGGACCGCGGAGTCCT
ACGCTTCCATCTCCGACGCCGCGTCCGACATCGCCGTATCCTTCCGCGACTGGTTCCTCG
CTCCCCCCCGCGCCGCCGAGCCGCTCACCGCCCTCGACGCGATCTACGAGGCCCTCGCTT
CGGACGACGCGGCGGCGCTCGAGGCGCTCCCGCTCTCGGAGGAGCTCGTCCTCTCGGTGC
TCCGCCACCGCCCGCGGAGGCTCCCCGACGGCGACGCGGTTCTGCTGCTCCGCCTCAAGT
TTTTCGACTGGTCGGGGCGCCGCCCGCAGTACCTCCACACGCGCGCCGTGTACCATGCCG
TCTTCCGCCTGCTCTCGCGCGCGCGCCGCGCCTCTGTGGTGCTCGACTGGCTCCGCCTCT
TCGCCGCCACCTCCGCGTCCACCGGCCAGCCGCGCTTCCATCAGACGCTCGTCGTAGGCT
ACGCCGTCGCGGGCGACCCCCAGCGCGGGCTCAGCGTCCTCGGCCGCATGCGCTTCCGCG
GCATGGACCTGGATGCTGTCTCCTCCCGCATACTCCTCAACTCACTTGTCGATGCCTCAT
TCCACGACTTGGCAGACTCCTTCGCCCGCAACCTTGCTGCTAGTCCCGTTGCAACCTGCA
TCCGCATCAAGAGCCTCTGCCGCCGCGCCCTCTTCAGGGATGCCACCGCACTACTTGACA
CCCTCCCTTTCGCAGAAGCATCCAGAGGCCCCGCTGCAGGCTCTATTGTCACGGAGTTCT
GTCGGCGTGGGCGCTTTGGCGAGGCAGCCCAGATTGTTGGCAAATTCTCGTCATGTGATG
TGTATGGCGCGTGGATCCATGGTCTCATCGAGGCTGGGATGCTTGATACTACATTGCAGT
TCCTTTCCGATAAGAAGGAGGCTGAGGGATATATCCCTGATGGTCAGCGGTATGATAAGC
TTGTGCACCGTCTTCTCCGCAAGAACAGACTTGGTGAAGTTTATGATTTGCTTGTGGAAA
TGATGGAGGAGGGCATTGCTCCAGGCCGTTCAACCATGAATGCCGCCCTTTGCTTCTTTT
GCAAGGCCGGGCTTGTGGAAGTTGCCATGCATTTGTATAGATCAAGAATGGAGCTTGGGG
TTAACCCTAACAAGGATGTCTACAACAATCTCATCAGGGCACTGTGCCGAGGTGGGGCCA
CAGAAGAGGCTTGTCTGGTATTGGAGCAGTCTATGGAAGATGGATATTTTCCTGGACGTC
AGACATTTGCAATGTTCGCGAATGTGCTGTGTCAAGAGGGGAAGCTGGATAAGGTGAGGG
AGCTGCTCGATAGGGCTCTCAAGCAGGAGGCGTGGCCAATGGACAGTGTATTAGCCAAGT
ACGTTGTTGCATTGTGCAAGAGTGGGAATGTGGAAGAGGCATGCACAGTACCTCAGATAG
CGAGCAGCAAGAACCCTGCGGGCCTATATCGCTACGAATCAACTTACAAGAGCTTGATTA
GAGCATTAATATTGATTAGGAGGGTGGATGTGCTCCCAAGGCTCATACTGGAAATGCAAG
ATATGGGGCACATCCCGACCCGAAGCCTCTACCAGTCGGTTGTTTGTGAATTGTGTGAGC
TGAATAGGTATGGTGAGGTTCTTGAGCTGCTGGAGAACCAGTTGCGGAGGAGTGAACTCC
AACCCCGTGTGTGCTATAACTACTTCATCTCTGGGGCTGGACATGCTAAGAAGGCTGATG
TGGCCAGGGAGGTGTACAGCCGGATGGAGTCTGCAGGGATTGAGCCATCTGTCGAAAGCA
ATATCCTTCTTCTCATGAGTTATCTGAGGAGTAAGCGTATTGGTGACGCACTGCATTTTT
TCAACTGCATTCATGAGAAGAAGCCACCTGGGACCAAGATGTATAACGTATTTATATCTG
GCCTATGTGAAGCTCGGAAGCCGGAGCAGGCAATGGTATTTTGGAGGGAAGCAAGGGATA
AAGGATTAATCCCGAGCATCAGCTGCTATGAACAGCTTGTGCTCCTTTTGAGCTCTGTTC
AAGATTATGACAGTGTTGTGAAGATTATTGATGACTTCAGGGAAACAGGGCGCCCTGTTT
CAGCCTTCTTGTGTAATGTGCTTCTGTTGCACACACTGAGGGGCAGCGATCTTCTCAAGG
CATGGGCGCGTTCAGAAGATAAATCCGGGTCTATTGAAGCAAGAGCTGGAGAGATCAAAG
GTCGGGGGGCAGGACGATTCTTGATTGGCCAACTTATCGAGTTGTTTGCAAGCGGTATCC
GGAACAGGAGTGACTTGGAGGTTTTAGAAGAGGGTCTAGAACAGTTCTTTCCTGTGGACA
TTTATACTTATAACATGCTGTTACGAGGATTGAGCATGGCAGGGAGGATGGATTCTGCTT
GTAACATGTTCGAAAGACTCTGCCAAAGGGGCTATCTACCAAATCGATATACTTTTGATA
TAATGGTACATGGCTTCTGCAAGCATGGCAGCAGAAGTGAGGCTGAAAGGTGGATGGAGG
CAATGTACCGAAACGGGTTCTATCCCACTTGGTACACTATGAGGTTGTACAACAATACAT
CCTTGCGACCACATGATCAGAAGGCCATTTCATTTGTATAAGTAATAATTACATATCTCC
CCGCATCTGCTTGTTGATCTGAAAGTCCTATGACTTTGCCAAAACAGGTAATGTATTGTT
AAACCTCGCTCTTGGATTCATTTTCTACTTCATTGTTAGGTCTAGTTGTTTGAGAAGTTT
TCGTACCAGTAGGTTTTTGCTGGTTTCCAGAGAACTGAGATATTTGGTAGTCATATTTTT
GCTATTGTTTTCTTATTACACAAGGGATGAATCCCTTGCGCTTTATTTTTGGACTCGTCA
CACTAGCCTGCCTACTGGATGTTAATTGGCCAGACAAGAGAAAATATGTTGGATGGATCA
TTTTTGTGGCAATCCCACATTGCTTGCACAGTTACAAGAGACGTGCAGTCTCTTAATAAA
AGAGCGAACATGTATTTTGTCTTATATTTGCATAAATTACATTGTTTGTGCGATTCACTG
CATTAGTGGAACTGATCGTGTGATGTACATTAAAGTGGTTCTTTTTTGGCACTATACATT
AAAGGCGTTCTAGTTAATCCGGGTTATCAAATGTCTAATAGACCAAAACTTCGAAACAGT
TTAGCTTTTAATGTTTTATAAACCACACAGTAATTCAGTTCATAGTCTTACATTGTTTCC
CTCCCAGTTTTGGGCATTGTGCAGGCACTCATTTTGGGGATTAAACATATTCATGTGGAG
CATATTCCCAAACTTAATATTGTAGCGTCCTGAATCACACCTCGCCTGGCACAGCATAGC
ATGCGTAGGTATCAGTTTACATGTAACATTGATATTATTTTTTTGCGTGGCCCATGATGT
ATTCTACTAGCTCGACATAGTTTTTGAGGTTTGCACTGTTTTACCTAGTGTAACAATAAT
AATTCAGTCCCCGCTGAATCAGTATATTATAAGAAATGCAATTCCTTATCATGACATGAT
CACTATCTAGAAGCTTAGCCTAGCACTGTGAATAGATCGAAGGCAGCTAACTGGTCCAAA
TTATGCATTAGGTGTGTGCTTCGAGATCCAATGGCTGTAACACCTTGCAAGGTTGATCTG
TTTATGGTGCAAAGCTGTTGAAGCAACGATGGACTAGGCTCTCTATTTTCGCTGTCAGGT
CCAGAATGAAATTGGATGGATATGTTTGCTCCATTTATAGTTATATTGTGCTAGAAAGAA
AGGAACGGTTCGATGTCCATCAGTTTGTGATTTCGGAGCTTGCTTACCGACTTTCATTCA
TATATGAAAAGATCAAGGGTGCCAAAGTCTTCACTGATACAGACACGTTCTGGTAGATGA
GGAGAGACTTGTTCTACCCTTTTCCCTCTCTGGCCAATGATTTTAGGAGCTAGCATCAGA
TGGCCTGTCGTGGCAATCTTCTTGATAAAAACGCATAGAATGAAGCATAGATGAGACATT
GTTTAGCGTAGAAGGCTTATTTTCAGGGTTAACATCGTCTTGAAATATTTTCAGGGTTGT
CTCCATATGGGTTTCCGTTTTACCTTCCTGGATGAAAACACTGTACATGCATTTATGGCC
ACAACTTTAGTTTATTTGTGTCGTTTGAATTAAAAAGCATACAAATTAATAATTCGTGTA
AAACATCCTCCCTCCCTCCCATAATATAAGAAGAGTGTAGTGTCAAAAATGCTCTTATAT
TATGGGATGGAGGGAGTAATACTAGTCATTTCGAAATCTTTTAAAGAAATGCCACACGTA
TACCCCAAAAGGAAATATAAATGGTCCACTATTATGCCAGTGAGAACAGCCCCATCATAC
ACTTAAAAGGTGGGCCAACTTTCATCTAAAATGGTCAAAAAAAAGGAACGGCTGGGATTA
AGCGGGCCTATATACACAGTTCAAACTTCCATCTAATGTACTTATCACACTCGGACGCAT
AGTCAACGTTTTTTTCTGCTAACATAGCTTATTCCACAAAACAAAGTGGACAACATCCAA
AAAAAGGGGCACTTGTACAACTATTCCTGCATTAAGAAAGAGTACATTCTGCTCATTATC
ACCTAGACATCTCATCTATCAACTGTATTTGTTGTTGTCGACACCACGGCAGGTCGACCC
TCTATGGCACCCGTTCTCAATCGATATCCAAGGTGGAGTATGGCGCATGGCCAACCTGCA
TTGGTTCAAAATGTGGCCGCTTTGTTAAGCAATTCATATACTAGCATTTGGTTGCACAGG
GTCTAAAAATTCTGAAGATCTCTTATCAGATGTTGCTACTTTAGTACTTACAGAGCAATC
GTCATGGACACGCCAGATTGTCTCGCCTAGAAGGTTCGCGACTGAAAGGATGGTCAGCTG
CGGGAAATTCTTCTCCTCCTTCAAAGGGATAGTGTTCGTGATGATCACTTCTTGAAACAA
ACCACTTGATAATCTTTCGATGGCTGGTGGGCTGAAACGGTGATGTGAAACATACTAGTA
AGAAATCAGAGCTATACATGTCACCACAGAATAACGCAACCAAACATACGAGTCAAATTC
AAGTTCAATGATTGCATCTCAGCCTTTTCTGATGAACAGAAATTGTAGCAAGACAGCATA
ATTATTCCAATCTCTATTGAAAGTTTACACTTTGGTTTCACATTTCCATGACACAAATCT
AACACCACAAATAAGTTCAAACCAAAATTTCTTAGCATCAAATATTTGGTAATTGTCACC
ACTGAATTCTTTTTCCCAGCCATTTTTCTAAGTTATTGTATTCATCTAGATTTGTAGTTT
AGATCTGACATACAATGTTAGACTATACCAGCACAATGTGCGCTTTCTGAATTGCGCACA
CAAATTGGTGCAGACTCTGGTTCCATCAAACTCTCAGCTCCATGGAATAAGTCTGTAACT
ACATATATAGTGCGGTGACGGGACTCGCCCCACAGCAAGGCAAGTTCAGTAGTTCATCTA
CCATACTTCATACTAGAAAATATGGAATGGGCGTAAAAGCAGCATACCTAAAAACAGCAT
GTGTACAGCATGCATATACTTCTCTTGCTCCTTCTTGATGCAGCAGCTCAGCTCCTTTGG
CAATAGTTCCTAATTTTAATTGTAAATAGTCTTATTAGGATATAAATATTCATATTCAGA
AGCAAACATTGTCAAATGGTAGCTACTTTTGATATGCAACAAGTGTTATAATTTACTTCT
TAGTTAGCATCTTTCCAAGTTTAAACTATACTGCAACTCATATGACTAGTATCCAAACCT
TATTAAAAATAATAATTCTAAATATATACTCCCTCCGTATCAAAATATAAGACGTTTTTT
GACACTATCACAGTGTCAAAAAATGTCTTACCCTCAACCTAAGTAAACAGTTGCCCCTCG
GTGTGATAGATACTATGACATTAAAATATGGCTCAACTGCCCCTCAGTGTGAAATGCTCA
ATCTTAGAATTATGTTTCCTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGATGTTCC
ACTAGAAAACTACATACGGATGTATATAGACATACATTAAAGTGTAGATTCACTCATTTT
GCTCCGTATGTAGTCCCTTAGTAGAATCTCTAAAAGGACTTATATTTACGAACGGAGGAA
GT