morexGenes - Barley RNA-seq Database

Contig contig_1561607
Source Contig contig_1561607
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561607 (6603 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1561607

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11681	1	338 bp	None	Not available	Available	None
MLOC_11680	1	480 bp	None	Available	Available	None
CDS Structure of MLOC_11681

CDS Structure of MLOC_11680

Contig Sequence (6603 bp)

>contig_1561607 6603 assembly3_WGSMorex_rbca.fasta
CGTACATGATGCGGAGTTGCACGAGGGCGGCTGGCGGCGCAGACGGCGACGCCGGCGTCC
GCAGGCGCGACCTCGGCGGGACGCACCGGCGGGGGGTAGCGTGGCCCGCGCTGGCGACGT
TGTGGTTATGCGTGGCTGCGGCGCTGTCTGTATGAAAGTTTTTGTCAGACACATTGCTCG
TCGTGAGTGATTTTTAACCTTTTTTCTATACTCTCTGTGTTGTTTACGTGCGAACGGATC
GATCGGGGTATCAAAACGGAGGCCGAAAAATGGGCATTGGTGGGTGGCGCGGCAAGGCTG
TACGAAATTGTCGTGTCGTGTCAGCGTGACGCGCCCACTGCATCTGCATGGACACGCGTC
TTGGGCGTACGTACTATGTACTGTTGTTTCTTGTTTGATAGGTTTGTGTATATATAGCAC
GGACAAGGGCAGCAGGTGGCGTATCACTTTCCAAGTCGCGGCCCCGAGATAGGAAGGGTA
GTTTTCACTACGCGCGTAGTAACAAAGTGAATGGCATTCTTTGGCCGAAGACAATGATCT
GTTTTTAATTAGTACTCTCTCCATTTCTAAATATAAGTTTTTTAAGAGGTTTCACTAAAA
AACTACATACNNNNNTATATATACATATTTTAGAGTGTAGATTNNNNNATTTTGTTCCGT
ATGTAGTCTTCTAGGGAAAACTCTAGAAAGCCTTATATTTAGGAACGGAGGGAGTACTAC
TCTATAAAGTCATAGTCGTGCCCAAAAAACTACCGGTTGTGTTGTTTGTGGAAAAACGAA
GAGGCTGGTTGGTTGCCAGCCGTAATTTACAACGTCAAAGGTGTTTGGTTGCCAGCCGCA
GCTGGCCACGACTTCCTAGTTCAACATGAACGTTTGGCTTGTCACATCACGTAGGGGCAT
CTGCTGTAAAAAGAAAAAATGAGGCGTTACTTTCCCACCACACAGGTGTGGGGAACATCT
CATTTTCGGCATGACAAACTGAGCCTCCAATCAAACAGACCCAAAGGCTCCAACAGCATC
ACTATAGATTGGTTTTCAAAAAACATACTGTAGTTTAAGAAATCATAGTATCTCTAAAAC
TGTGGTCTTTCTGTGATACATAAAAAATTGGTTTCCACCTCCTTTTTAGAAACCGAGAAA
TACGTTCGTTCGTCTCACTGAATTCATCTTCTTCTCGTCATCAATGTATGTGATACAGAA
ATCAATACTAGCTAGCCGATCGATCTATTCGGGAGAGACGCATGCACAACGTAAGAGATT
TATAGTCGTGAGCTTCAAACTCGTCTCAAATATCCGGATCGACGGTCCGGTTCATGACCG
ATCACGAAAATGCGAGGAAGAAACATGTCTCAAACGGGCCTTAAATGTCCGGTCTATCCA
ATGTCGTGCATATCCAGCCTAAATCTAGGGTGGAATGGAGCGGTCCGAACGCGCCCGTCG
AGTTCGTCGCGTCAGTTGGCCCACCCTGACCCCATTCCGTCCTCTAAAATATCCCTACCT
CACTCCACTCTCGCTCCGTCTCTTCTTCTACTCTTCGGATTTCTTTGATTTAATCTAGTT
CGATGACTCCTACGACCATGTCGAGCTCCGACAATCGCTTCAACTTCGACCTTTGTGCCG
ACGAGGAGCTGGCCCTCCTCATTGCCCTCGAGAGGTCCAAGGTGGACACAGGGGCTAGTT
TTGGATTCTCGTCTCGCCTCTCCCTCACATGTGCAGCGAGGACGCTCGTATTGGGCCCGC
TCGGCCCACACGCAGCTCCCCATGGGATGCGCAGTCCGATCCTCCCCCATGTCCTACCCT
CGCCCTGCCTGCTACTGCTCCCTCGCGTGGGGTAGCGGTGGGTGCTTGTGCCCACCCAAC
CATCTCGGACGCGCACGCAAGGACCAGAGGCATGTGCCGCCCGCCGCGAGAGGCATCGGA
CAAGGGAGAAGAAGGCGGTGGAGAAACATTTCCACCGCCGCCTCATGTTTTTCGGTGAAG
ACCGATGAGGACGAGCGGCTCCTCGCTTAGGTCTATCGCGGGTCACTTACGACGCCAAGA
CGGACGCTTGGCAGCTCCGCCAAAAGGTCGACAAGGCGCTTCGGCTTGTCATCAAGTAGT
CCGAGTGAGAGGCCAAGTAGAAAGCGACGGATGCGGCTCGAGACCGGCCGTTCTACGGTT
CAAGGGGCTCGTCATCCTCTACTTCTCCTCCTTCGACGACCACGACACATCGTCCGACGA
CTCGGATGAGCCTCCACCACTCGTCATCGCCGCCTATAGCTGCGCTCGCAACCGAAAGAT
GAAAGGGATGGCAGAAAGTGGTGAAGACCCGCATTCTTCAATTTATTTTCATATTTTTAG
ATGTAGTTAAAAAAATTCTATCGTTTATGTGCATTATGTGAACTATAGCGGTCTTTTGAA
GATCCATTGGTGGTCTTTTGACGAACGGATTGTGTAACAATCCGCAAAAAGCACTAACAC
AAGCTGATCCGTGAGTGTAGCTGAGTATTCATGCAATACTCTAACAATTCGTAAGAACCA
AAGAAACTAAGAGAAGACTACCACTTGCCAAACACCTTCGTAGTTTTACCAAAACTGAGA
AAAACAAAGATTTTAGAAATTGAAGTATTCATTGCCCATGAATGAAATACTGAGGTTTTA
GAATACCATGGTTTTGAATAAACGGTGTTGCCAAAGTAGGCCTAAATGGTCTAAAAAAGA
ATTACATCATGCTTAGAAAAATTGCTACAAAGCGTTGCAAATATACATAACCACTAGTCA
ATGTCCAAAGAACAAAAACGATGTGGTGGGAACCCAACCATTGTTGGATGAACTTTCACC
ACCGCCGCACTACCTCGCACCACCTTTGTGCCGGCCAATTCTGGTGGCCCTCACGGGGCC
GCCCGGAGCCCCACCACGACCTCCACAACCGTCGCCAAGCTTGCATCACCGTCGCTATGT
CCTGCTCAATTTTTGTCGTCCAACCTCTTCAATTTGTCGGTTCCACCCCTGTCGAGACCC
CTGCCGATGTCTTCATTGAATTGGCATGTTTTATGTGATTCTCAAATTATAGGGCACTAG
TGTTAGAGCATCTACAACAAGGAGTGCCAAATCCGGCACTCTTTACACCCGTGACGTGCT
CGGATGCATCCGCAGACAGTGACGAGCAGTCCCAACACCGTCCAACACCCTATATCTATA
CAAAATCATGCAATGTAAAGTCGTATTATTTAGATCATCAAACAAATGAATTACACACAT
ATCAACTGATAGCAAACAAACATAATTCATATATAAACATCACCAAAAGTTTGCCACAAT
TCAACCATTCGGTAAATTCTAACTACATTTAGTAGTACGAGCTAGATTATAGAAACGAAG
AGAGGGTTGAGCTTCACCACTTCCTCGCCGGCCCTTTGCCCTTCCACTCGTCGACTGCGT
CCATGACAGAGGGTGGGTTGTCAGAGGAAGATGAGATGACGATGTAGCCCTTCAAGCCGT
GGACGATACGGCCCTGCTTCCGCTTGAGCTTCATCATCCTTGCCGCCTACTATTCTGATT
CCTCAATGTCGAGCCGGAGTGCTTTGGCGTTGATCCTCCGTAGTCATTGGACGTTTGTCT
CCGTTGCCATAAGTGACCGACAGTACACCCACTCGACGAGTTTCTCCTCCTCGTCGGGCA
CCACCGGCATCACGCAACAACGGTGGGGGGACTGCGGGATCACGTCTGATGCGGTTGCCC
TCTCCCTTGCCCTCTGATTCCGACGTGCGCATCCGCGACGCTGACGAAGTGGGCACTAGA
ATACATTGATGCCCTTACGGGGCATCTGCCGAAGAGAGAGGAGGCCGATGGACGGGTGCA
CCAATTAAGTTGCCCACGAAGATCCACCTACGAGGCGGGAAGGTCCATTTCCGTCGTCGG
CATTGTGACCGCGGGCGACGTCGTACTAGAGTCGGAGCTGCCGCCAGTGTCCACCCCCAA
GCATTGCAGCGCAATACGGATGGCCAACTCATACTCGTTGTCGGCACCATCAGAAAGGAA
CATGTCCTAGCCGCCAAAGTGGTTGCTAGTGATGGACATGATCTCTAGAGGTCGGGAGTT
GGAGGATTAAAGAAAGAGGGAGCGGAGTGGATTGAGACTAGCGTTCGATCCGAATGAATA
TTTTTTAGGTCATGATGTGTTAGACGTGGTCCGAATATATATAAAAATACCGGTCAGTCT
AGATGTTCGAGGCTGGTTTAGGCCGTTCATGATGGGGGTATCATAGCTAGTATCATAATC
TTGGGACTATCAAACATGTTGAAGTGGCACATAAATAAATGAGAGAGAGAGAGGGTTAGA
GTAACATACGTACTGTATCATGTTAAATGTTATGCTAGCATGTCTCATGCATGTCAATAA
ATAAGACCATCTATGATACTAGTTTATGANNNTATGCACTATGAAGATAGTATCATACCA
TAGTATCATATGCATGATATCATGGTATCATATGCATGATACTACTATACGATACTTTCA
CTATGAGTAGCCTTAATGTCTCTCGACGGGTCCGTTTTCTTTGACCGGTCCGTCCCTTTG
GGCATTTGAGCGAGGTTGAGGCGGCGGGATGTAGGATATCTTGAAAAGTAGAAAATTTTC
ATGCGCCTGAAAATCTTTGCTCTCCATATGCAAAACCATTTTAAAGACGCTAAATTTTGG
AAAACGATTAGAATCAATCGACTGATCTCTGTCTCTCGTAAACCTCCTCCTTCGTTCAAC
ATGTGTCCTCGTGGCCCTGCACACCGCATCCATCCAGCCTTATCCTCATCTCTTCTCCAC
CTTATCTTCACACAGTCACGAGACATCTCCCTCCCCAGCGTCTCTCTTCCTTCTCTCCCT
CCCTCTCGTCTCTCTGATGCAGACCGTCGGGAAGGGAAACAGAGTCGGCCGTCGCTATTG
CCGGAGACTTGCTCCCCTCCTTCTTCTCCTCCTTCCCTATTGCGCTACACTGATGTTGCA
AGCCCTGCCTTCAAAAGCCGTCGTGTTTGTGCTCCAACGAAGCATCAATGGAGGGTTGCC
ATGGTCGTCAGCAACAGAGCTTCGCCGGAGCTGTTGGTGATGCGTTGGAGCTCTGTCGGG
GCTGCAATGGAGCTTTTTCGTCGGAGCCGATGATGCCGCGTTGGAGCTCCGTCGGTGCTG
CAATGGAGCATTCGTCGGAGCTGTCGGTGTTGCGTTGGAGCTCCGGCGGAGTTGCAATGG
AGCTTTCTTGAAGCCGGCGATGCTACGTTGGAGCTCTGCTGAAGTTGCAATGAAGCTTCG
TCGGAGCTTCAGCGGAGCTACAATAAAGCTTTTGCCTAATGCCATCCGTGTTGCATTGAA
GTTGATACTGCCATTATGCTACAGTGATCGGATCAGATGGCTGACGAAACGGATGACGAA
ATCATTCGATTGATTTGTAGCCGCCGTCCTGAATTTTTGGACAGCTGTCAAAAGATGTTG
TACCGAGCTCATGAATTCAGCGGTGGTGCCTTTAACTCTGGCCTCGCACGGGGGCATCTT
GGGAGCCACCGACACCGGAGCAGATCCCACCGCTACCGGCGCAGCAAAAAGCCATGATGC
GCACGAGCCAGCGAGACCCTCATCACCGGCCGCATGCGCCTCCATCCGGGTCCGGGACCA
GCCCCAGCCCCCACACGATCGCCACGATCCACGCCTACGTACGTCCTCAAATCTGTCCTG
CTCGCGAATCAGACGGCCATGCATGCATGCATGGCCTCTCCCCACCCACCAGGGCCCTGT
CCCCGCGCCAGGCCGCTCACGGGTTCGCGCTCGCGCAACGCTTGCCTCCGACTCGCCGGA
GCGTGCAGTCGCTAGGCCTAGGCGTGATGCCACGTTGCCGCATTTCTTGGTTTCTCACGT
CCTTTTTTAACTGGATTTCTTACGTCTCTGGCACAAAGGAATCTGGGCTTTCATGTTTCT
GATACGAAGTGTCCCGTGCTTCTCGGCCCACATTTGCGTGATTTTCGACACTCTGAAGTG
AACGCACATCTCAGGTCAGGTGTTCAACCTACTGAACCACTATTTGCACCGACAAGAATA
CTACTCCCTCTGTTTCTAAATAGTATAAGACTTTTTAGATATTGCACTATAAACCACATA
CGGATGTATATAGACATATTTTAAAAGATATATTCATTCATATTGTTTCGTATGTACTTT
TTTATTAAAATTTCTAAAAGGTCTTATATTTTAAAACGGAGCGAGTATTAGTATACGGCG
TTCGATCACGTGCCCAACAGTAAGCGAGTGACAAAGTATATGCAGCATGAGGATGCAATG
TGCAACCACCGGAATTGTACATGATACATCTGAGATATCATCCATCCATCCATCCATATA
TTTATAAGAAGAAATTAATAAATGACCAATGTGCATGCAGTACACCAAGAATCCTTCGCA
GTACATGCGACGCCCAGAGGAACGTCGGCGGGGACAACACGCTCGTGTAAACAAGATGAC
CAAAAGTAAAGTAACCATCAATTAAAACAAGACGACGAGCCCGGCAGCAACCAACGCCGC
GAGCGCGGCGACGCCGGCGCGCGCGCTCCCGGCCGCCGAGTCCTCCTCTGCCACGGGCGC
CAG