Map Locations of contig_1561486 (9279 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1561486

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11621 3 2309 bp AK362026 Available Available None





CDS Structure of MLOC_11621






Contig Sequence (9279 bp)

>contig_1561486 9279 assembly3_WGSMorex_rbca.fasta
GCATGTGTACACTCACAAACACGTTACTCTCTTAACCTATAAGTCTTCAANNNNNNNNNN
NNNNNNNNGGGCACTAGATGCACTTACACATAGGCAGTCCACTTGTCCATTTAATGGACC
AAGGCCGAGGTACTTGTAATTATCAATGTTCATTTCATCACTTGTTTTATTATGTACTCT
CTCCGTCCCAAATTAAGTGACTCAACTTTGTACTAAGTTTAGTACAAAGTTGAGTCACTT
ATTTTGGAACGGAGGGAGTACTAACTTGTTTATATTTGTGCAGGAAAAGGAAAAAAGGAG
CACCAAGATATCCAATTGATTATGATTCCCCAGCACCCGAACCTGAAGTGGCAGCCCCGC
AACTTGAAGTTGTTCTCACTCCAAATAGGCACATGATCACTATGCCACAAAGTCTTCAAG
GCAGTCCCAATCCAGTGACAAGAAGGTAGCACATCCACACACTATAGAAATATCTAATTT
TCCTTGGAATTCTTAAATTTCTCGATACATGCAGGATGTTGGCTACGGCGTTGGCTGATG
AGAAGACATGTGCATCATCACTACTTGAAGTTGTTGCCAGTCACAATAGGCACAAGATCA
CTATGCCACATAGTCTTCAAGGAAGCCCCAATCCTGTGACAAGAAGGAAGTTGGCTATGG
CATTGGCGGATGAGGTGTCCCAACAACCGACCACAACCGTTGGGAACACCATGATTGCAT
ATGACATGTCCTCGAGTTCAAGGGCTAGAAAGTTGACCCCGGAGAGAAGGAAGAGCTAGT
GTTGTGCTTGATCTTCTATGTTCTCTATGTTTTTTTACTTGTAATTTGTCAGACTTGGCA
TCCTACTTTGTGTAGAACAATGCATCAAGTGCTTCCTTATGTTTTTGGTTGTAATATGTC
AGACTTGACACCTTATGTTAGATGATGTATGAAAATGGATGATGTATGGACATGTAAAAT
GCTTTATTTTGCTATACTAAATTCAAGTGTGATATGGATATGAATATGTCTTTACAGAAA
TATATGTTAGAATTTGGATGATATGTGCATAAATTTTGTGAAATAGTAAGAAAACAATGG
AAATGTTGTCCAAATTGAGCCAAAATGCTGCCCAAATTTTGGACTTTTTTCAAACAACCC
GGAAAAAATTGAAAAAAAAAATCCATAAAAACAACCATACATGTGTGACCATTTTAGTAA
AATCTGGGCTCATTTCAATGAGCCATTTTGGTGGAAATTCAAATTCAAATTCTATCTGCA
AATTTTGACCAAATTTGTAAGTAATCAAAAAAAATACAGAAAATCACTTATACATGAGTA
ACTAATCTAGGAAAGTTTCATATATTTTTATCAATGGTTCAAATGATTTCTATGCACTCA
AACATTCAGCTTAACTAGTTTGACCAAAGTTTGAGCAAAATTTAAAAGTCCTCAGAAAAA
ATTGAAAAAATTACAGAAGATCAATCATGTATGGGTGAGTAATCTGGAAAGGTTTCGTCA
TATTTAGATCAATGGTTCAACAGTTTCATGCATTTCAACTTTCAGCTCAACGACTTTGAG
CATGTGAAGCGAGGCGAGTGCGATATGCGAGGGAGGAGCAGGGTGGAGCAAGGGAAGCAT
GAGGGGGTGCGATAGTAAGGTAGCAGGGGTGGGTGGGGTGGGAGGGCAGCAGCTAGGGTT
CATAATGTTTTTGGGGTGGAGTTGATCTATGTTTCAGTCAAAGAGGTATAAGGGTATACT
TGTCCTCTGATTTCTGCAGGTATTTCTTTTAGCATTCGCAAAGATTGTTTTTGTGTTACA
ATGTGGAAAAATATTAAATTTCAAAGTAAAAGGTGGCAGAATATCAAATACAAAATTAAA
GTTGGCAAATAATCAATGTACCAAGTAAGGAGTGGCAAATACTCAAATTCCCCTTTTTTA
GTTGACTAACAAATATTCCACACTTGACTCAGTCGCACATTAAAAAATATATTTACCTAT
CTATTTCAACTTAACTTTTTAATTTAACTAATGTATGTTATTTTATTGATACATTATTTG
ATTATTTATATAGATAAAACCTTTTTGGTTTAACTAGCAGCTTTGAAAACTCTAAAAATG
CACATTTATAATACGGTACAAATTTGTCATACAATTAATTTAGTCACCATTAAAAATACA
TTTGTGCTACATTGAACTGTATTTTTTGAAAGAAAATACATTATTTATTTCATGGTGTTT
AAGAAAAATTAATTGTCACATTCGTTTCAGCATAAAGCAAAGAGCAAACCAATACTTTCA
CATTATTCCACCAATTTACATATATACCCTTTGACATATTATAATGTGTTTTAATATGTA
ACACTAAATATCTTTAGAACTTGGTAGAGTGATTTTACAATATATATGGTTGTAGTAAAT
AGCATGAAAGATTGACACCGGTTCATTGGTGCAATATAAGAATTATTTATTTCATGGTGT
TTAAGAAAAATTCTGGAGCTCAAATGGTCCCTTGTGAATAGTAAAATAAAAAAATAGTAA
AACAATTCTCAATTGGCTCTCCCTTTAGCACGCCTCCCCCAGGTTGCACTGCACTAACGC
TGCAGCTCACGCCTTTCTGCCTGCTCCGCGGCTCGCACCGTCCTCTGCCGCACCCAGAAC
TTACATTCGTCTATGACGTCTTGCAGGAAGCGCTGGCGCCACACCTCCATGGCATGCTCG
TCTATCCCGACGATGAGGAGGCAGCGATCCTGCCTCTGAGCAGCCGGAAAGTTCATCTGC
AAGAGCGCAGCCGCAGGCGGCCGCTTCGACGGTCTCAAAAATGTCGAGCCCGAGGCAAAT
GTGCTCCAGAGCGTATCTCCACATAAAGTGTCAAGCCCGAGGCAAATGTATCCAATAAAA
CTACTCAAAGGGTGCGACGGCATCGTGGCAACGAGGAAGAGGCAGGGGCAAGGAAGAAGG
GCGCCGACGACGAGGAAGGACACAAGGGACGGTCAATGACGCAATAAAGGCAAGGAAGAA
GACGACGAAGGTGACGGTTTTCAAGCGCCCGGGCATGGAGAGTTACCGCGCACGAGCTTT
TCCCGCGCCTACTGGAACACACAAGACACCCTCGCATGCACAAAAAGCGCGTTTTTTCCA
GCACGCGCCACATTTACCGCGCCTGTCAGGGTTGCTCTTAGAACAGAAGCTGATTAAAAA
TAGATTATCGCTGCTCCAATCTCTTTTTTTATTGTTGGGAACGAATCAATACAAGGACGC
CCTTCCTATTAATTAAGGATTACAAAAGCAAACCCTAGACCTAAACTCTCTCTCTCTTTC
TCTCTTTTTCTCTCACATAGAATAGAATAGAATACATGCAACAAAAGAACTCTTTGAATG
TTGCTGCTGGGGTTGCCAATGGAGCGCGACACCAAAACCCCAAAAAAGCCCCCACTGGAA
CCAGCCAATACAAATTTTGACTCGACAGACAGACCAAACCCAAGTCCTCCTATAACCTAC
AAGACGCACAACCACACCGCCTTTTCCGACTCGACAAAAGCAGACGTCCTCCCGTCGCAA
TTCAATTCCTCGACTCAGTCACGCTACACTTTTGAGCAGACCTGTATACAACCAGAGGAC
AGCATACAACACCAGCCAACCCAGGCAGGCAGAATCAACCAATCAATCGCATCATCATCA
TATAGGAAACCACACAATGTGCTACGCCCTGGACACCTGACGGACCAACGACTTTGCCCA
ATCTCATGCCCTTCCCTCCTTTTCTGATGTTCAGCTCCGTTGGTGGTGGTGGTGGTGGTG
GTATAGCGAGAAACTGTGACGAGGATCTGTCGGCACCATCAGACCCCGTATCTCGCTAAT
CTCTGCACCACTGCCGGTTCCAGGGTGGACATGCACTGTTCCCAGCCGGCAGCTCCGAAC
ATCTACAAGGAAAGAAAAGATCACTATTAAGTTTCTTGCATACAACATGCACAAAACTGA
AACGACGACGACAACAATATAAAAGTTTTTTACCTGCTTGTAGCCATTCAAAATCTGGGA
CACTTCATTGTGCAAACCTTCGCTTTTTATCTCCTGTGCACAGATACAGGTGAGCTCATA
CATGCGACACTACTGTAGGTATACGGATGTAACAGAAACGACCAACTTACATTCCAACTT
GCACAGGCCTGGCATACGTGGACTAGTGAGCTCACAGCCCCTGTGGGGTTTGCTGCCACC
TAGTAGTGCACACACAAGAGTTTTTGTTGTAAGTGACCATTCGCATCTATGAAGAGTGTA
ATAGCAAGCATTATTATGTAAAGAGCTGCAGGTTTACCATTGCGCACAGACCATGGAACG
CATCCTCTTTCTCGAAATCATCTCTTATCCTGTGCAAGAAGGATTGCACAAAAGCATTAA
GAAAAAACATGCTCCATATCTCATATGCTGTCGAGCTACAAACAAAATCTTTGGCTATAG
CATAAAAGCTACAGAAAGAAAAAGGAATGCTCACATGCACAAGGCATTGCACCAGGCTGG
CATGAAATGCTCCATATGAGGGGCCACAATGTCTGGGCAGACCCATGACAGCCTCCCGAG
AGTGATCGCACTATTTTCAATGAGTGACTTGTTCAAGCTCTGTAAATGGCAACACATAAA
ACACTTAGCTGGAATGCTCACTCACCTAGAGAACATGATGAGAAAAAAAAATCACCTCTG
GGGTTGTTAGAATAGGTACCAAGCATGAAACAACACTGATCACCACAGGTGAAATTTCCT
TGCCAATCTGCCAAGGAATAGTCAATCAGACATGCAAGAACTTTTACAATAGTATGCTTG
ACTTTAAGGCACAAAACAGAGAGCGCCCGCTGCTCACAACTCTTATAAATACAGTTTTGA
AATTGTTATGGGGCATGTAATAAATGTCAAAAGGCTGGCGCTACAAGTAGTAAACCAAAG
GTATATGCTGAGAAACTACTCAAGGCACATGAAAATAATATACTTGCCAGTAATAATACG
CTTGGCACGAACCTTGATTGCTAATTCTCCAATGGCCCAACAAGCATTGTTAGCAACTGA
CACAGCATCCTTCACAGATTGCGGAGTCTAGATCAAAGAAACAATGTGAGGAACAAATGG
AGATATTATAATGATGGACCAGAAAGAACATAGGAAGAAACAATGTGAGGAACAAATGGA
GATATTATAATGATGGACCAGAAAGAACATAGGCACTTAGTCACGTACCAATTGCTTTGC
TGCAGCAGTAAGGAATTCTTGGAGGCGTGGATGAAGATGTATAGGGCAGACCTATATATG
AAAAGGTGTTGTGTTATAGGCTCAAAATGGCCGTAGCGGTAACAAATATCAGTTTAGGAG
CTTTGTGACCAACCCTAGCAAAGTCACCGAGAAGGGCCAGAGCACTTTGTCGAACATCCG
GTGCCTCATCCACGCAGCATTGCAGAAGTAGATCTCTCAAGTTGCTTTGCGCAACCTAAA
ACAAAGAAAAAGATAGCTTGCCCAATAAGGAAGTCTTCCTGGTATGATAAAATTTAGTAC
TAGCCAAACTCACATCAGTACTGTGTCAGGGGTATATGAACCTTAACGAGTGTGTATTTT
AGCTATTATGAAGAACATGTACTACATGATACTAATAAATTCAACTTTGTTTTCGCCATA
AGTTGCCAGCACATGCAACCCCCTCAAATTACTTTGGTAGTTCCACGTTGAGAACATAAG
GCAGGCAAAGTGAATATCATTGATGGGAGAGTTGAATTTACCAGACTTTCGATACCACTG
CCAAGTCCTTCTGTAAGTCCAGACAATAGGTCCAATGCACAGACAATGAACTCCTTATCA
TACAACGCACCTGCTGCAGCAGGATCAACCTGCATGTAGAAAGGAGATATCCCTTGAGCA
ACAGAATGGCATGAGTTTGTCTCATGTAATTAAACCTATAGCAAGCTCCAGCAAAGATTG
ATGTCAAATTGGCAAACACATTGATTTTAAGTGGCAATAATCCAGGGTACTTAAAAGAAG
AGAGTACCAGAAACCAAGCAAACAGGAGAAGAAAACCTCTATGCTTAGACTCGACAAAAC
TTATGACTGCAACTGTTCACAGAATGCGTCTCTAGTTAGGAGCAACTTCATCAAGTATCT
TCTATATCAACAAGAATGACGAGGACAGATTATGTAAGGCTACTCATAGTGGGGGGTATC
ATATACTAGTATTGTTCATATGATACTAGTGTATGATACTACCTTCATAGTGCATATTAT
CATAGAGTAGTATCACATATGATCTTATTTATTGCCATGCATGACACAAAGTAGCATAGC
ATTTAACATGATACACTATCTACCTATATTACTCTAACCCTTTCTCTCTTTTTTAATTCT
CTGCCACATCAGCATGTTTGCTATTCCCGAGTGCATGATACCGGTTAAGATATCATCACT
ATGGCCAGCCTAAGAGGTTTTCACCAATGTGTACTAATACAAGGAAGATATAACCTGGAA
AGATCCTACTTGATATCATATTATTAATTCATCTTCCAGAAGTGACCAAAAAACACACAT
TAAGCATTGAGTGCTAAACACTGCATCATTAAGGCCTCAATTAAAACAAAACAAAAACTT
GCATGTTAGGGCACGAGAATGTGTTTTGTGCCTTCATGGTTAGATTTGATGTACAGATCA
CAGTAAGTAATAAAGTTAAATCTAGCCTTATAGTAGGAAAAAAATCGTGCAGACCTTTGC
CAACTGCTGGGTTTGGATAAGGCTGATGCACCTCACAAACACTGGCTCAGCAAACTGAGA
AAATCCTGGTCCCAGTGCCTGAAAAGAAAAGGTCCATAGGAATTCCCAATGTTATTTTGA
GTACAATAAGACGGGATTCAACAGAGGTTCTTTTGAGGCCACTCATCATGTCCTAACCCA
CAATGGAATGCAAAGTAATTCTGCTTTAGTAGAATGAGAACTAACTTATAGCAAACTAAT
TGCTGCAGCAGGAGTTATACTAGTGCAAACATACGAGAGAACTTTTCACTTCTTGTAGTA
CAGTATCAAAATAGGCAACTGTTGGTGGTAATGAATAGACAAACACTAGGCAAACTGGAG
GACTTCAGATTAACAGTATTCTACATACCAATATACCATGCGAAGTTTATAAGGAAGATT
AACATGGACTACAGAACTTTGACATAGATACAGCAAGTTCAGACTTCAAAACTACAAGAT
GGTCTTTCCAAGATGAAAAAATTAACAATACCTGTGCAATGGATGTAAAGCATTCAAGCA
GTGGAAATAGATCCTTGTCAGAGTTGGGAAGTTGCTGCCACTTCGCGATTAATGGTGGCA
TAAATATATCAAGATATTTTGCCTGCATGGCATTTTAAAAGGAATTAATAATCTCTACAA
GGAACTAGCACGCTGAAAAACTGAATGAGGAAACCATCAAAGAAATATATTTGATAGTCA
AGAGAGCAAGTAAAAGAGTAATTCATCAAATGCTGAACCTGGTTTAGCTCTGCTCCAACA
GCATCAGCAAGGGTGCCAAGAGCGTCATAGAGTATCCTAAGGTTTCGCCTCTGCTCAGAA
GGAAAACATAACATTACAACTAAGAAAAGATAGACCCTGGGCTATGCCTGTAACTTGCCC
CATTTCGGTATACAAGGTCAACCTCATGTTTGAGTCTAACTACCATGAACTAGGTGAGAT
GGTCTTGTATACCAAAATGGAGGGAATAGCTGATTGCAAACTATGAATGTTTGAAATCTA
ATGAACCTGGTATTTTCCATATGCACACATAAGGTGCTGCAAAATGACTTCCAGTCGCGG
TACTAGTTCTTCTGCAGCCTCCTGAAGAACAGAAACCAATATGTACTAATTAGTAATTAC
ACACAAGATCTCAGTGCAGGAAAACAACTCAAAAATAGGTAAATAACCTCTTCAAGCGTT
GCAAATGCAGAACAGGCAGCCTCCTGCACTCTTTTGTTAGTATCCAATATCCTTCTAAGC
AAACCCATAAGGATCTTATCAAATTGCTCGCGACCATTTGGATGGCCAAGGCTCTGTGCC
AGCAAAAAAAAAGTGTCACAAGAAGTTAACAGAGACAGATCTACGAACTGAGCACACATA
AACAAAGAACAAGTCAGCATCAGTAAAACATTATCTGAAGTCCACAGTAGAACAGACCTG
CCCCAAAAGAATTAGAAACACATACAGACCACTGGGTGTATACATTGAAATGAGAGTCCA
CCAATACAAAACATATTATACATGTATCAATACAATCAAAAAAGCTACATATTGTAACTA
CACTACATCGTGGGTAGAAAATATAATGCTTTTGCAGCCTTGCAGCAAAGGTATACTTCC
AAACAGATAGGTAGCATCAAATACATATGATTATTCTGTTACCTGAACAATGAACTTGCT
GTATCGGGAGAGGGTCCAACAAGTAATACTCCGAATAAGAGGAAACTTATCATCAAGAAG
TGGGATTAGGAAGGCAACCATCTGCAATTGAACAGAACATCTCAGAAAAGATGCAGCAAA
TTGCAAGCGATGTAGATAGATAATTGAAGACAGGAAAATTAGTACTTGAATTGCAACTCA
CTAGAATCCAAAATCTCACAGATATAACACAGATCATGGAAGAATGTGAAATTTATTCTG
CAGGAACTATGATGCAAATGATTTCTTTTTATGATTTTATCATGTAGGGAACTAATGATT
GCATCAACAAAATATTCCTACAATCAGCATTCCAAACTTATGACATGCTGAGAAGAAAAT
TCGCTGAGAAGAAAATTCACAGAAATGTTACAGAAGGTTCATGAGAGAAGCAAGTAAAAT
TCAGGAAATTATCAGCCACGGTTTGATGCATGGCATGTGTTCTTACTGTTACTGAGGCTT
AGTCAGGAGAGGAATTGCTTTCTTGCAATGTATGTGGGGCTATGAATATGTCGTTGGTTA
CCTGTGGAAGATGGGGATATAACCCAGTGATGCATCCCTCTGCTATAGCACCAATCGATA
AAACAGCAGCTTCCCGCTCCTTCCAAGACTCATCATCTGTCCGGGCCAAATTTTGCTGCA
AAATTGTACAAGTTGATGTTGGTTATCCAACAGGTTCAAGAGCAGGCCCATGAACATGCA
CGTGGGCTAACTAAGGCCCTGTTTGGAACCACTCAGATTATGATAATCCAGTTTTTATAA
TCTATACTGTCTCCAAACAGGACAGATTATGTTGTACTCCCTCCGTTCCGAAATATAAGA
CCTTTTAGAGTTTTGACTATAGACTACATACGGAGTAAA