morexGenes - Barley RNA-seq Database

Contig contig_1561472

Source Contig contig_1561472

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1561472 (2530 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1561472

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11612	1	684 bp	AK376379	Not available	Available	None
MLOC_11613	1	553 bp	AK373953	Not available	Available	None

CDS Structure of MLOC_11612

CDS Structure of MLOC_11613

Contig Sequence (2530 bp)

>contig_1561472 2530 assembly3_WGSMorex_rbca.fasta
GCGGCGGGTGCTGGCGGGGACGCGCGCGTGGCAGCACCCGAGGGGCGGGCGCGGCAGGCC
GCCGAGCAAGTCGCTGCGGATGGTCGCCGCGGCCGGCGTGCTCCGGTGGGGCGGGTCGAG
CCGCCGCAACGTCATGTGCGTGGAGGCCGAGGTCGGGGGCAGCTCGGCGTTCCAGCGGCA
CCGGCAGAGGAAGGGCCGCCGAGGCGACGACGCGTACGCGCCGGGGCTGTTCCGCGTGGT
GACGGCGACGGGGAAGGAGGTGCACTTCGTGTGCCAGGGCGGGGAGGAGGCGGCGGAGCT
GTGGGTGCGGGGCATCAGGGCGCTCACCAGGGCGGTGTTCGGCAAGCGGGGGAACTAGGT
AGTGCTCCGTGTAGGCTTTGGCTTTGGTAGTTTGCAGCAAGCGTGCCTGTAAAGAGTAGG
GGACATTAGAGCGAGTTGATGCGTGGAGTTGGGTGTGCTGGTCTTCTGCTCGAAGGCTTT
GCCGAGTTGCCATGATGTTTTTGGTTCAGGGCCTGTAGTTTGTACAGCTTTAATTTGGTG
TATGTTTTTGCCCAAGTTGCTTTGGCTATGCTTCTAGTTGGCTTTCACTTTGAAGCTCTT
ACTATGTTAAAACTTATCCTAAAATCTTAGGATGATATGCCGGTTCAGTCTCTCGAAGGT
ATTCTAGGGGTATGAACGCTCGCATCTGTACTTTGTTTAAAATATATATATTTCCCAACC
ATAACTAGCATTTTAGTCCACCAAAACATACTACTCGCTCTGTTTCTAATTATAAGATGT
TTTAGATATTGCAATATGGACTACCCAGGGATTAAAATGAGTAAATATACACATTAAAAC
ACGTCCAGATGTATAAGAATCTGAGAAAATAGAATAAACAAAAAACATCTTATACTAGAA
ACAAAGGGAATAAAAGCAGTATGCAGACTCTTGAAGCAAGAGGTCAGCTTTTCTTTCACT
GTCCATTGACAAAAATTTGCTGGAACTACCTATGTCCCTCTTGGACATCCAATGGACAAG
GCCTTCACGAAGAGATTGATCAGCTGAAACGACTAATCAACCAGCCTTTCTCTTTGGAAA
TCATCATTATAGTGACTTGGGCTCTATGGAACACAAGAAATGAGTTCATATTCGAACATA
TCAGACCGAGTCTTTATGCTTGCAGGAGAAAGTTCAAAGAAGAAATCAAATGGCTAGTCT
AGCCTGTATATTTAACGCTGTCTTGCAGCGGTTGCTGTTGTTGTATTTTTTATTTCTAGT
CTAGCCTGTATAGCTCTTCTGTTTTCTCTTCTTCAAACATCTGTATATTTATTTGAAAAT
AAATAAATAAACCCAGCAAAGTCCTGCTGTTTCCCTAAAAAAAAGTGACCTATTGTTATA
AGAGGGTAACCACAGTCAACAGTAGACTCGGACAGAGGGCTAGGAAAGAATTCAGCCATC
ATGGACATAGCAAACCAGCTGAACAGGAGAAACCATACTGGACACAGTAAACCAGCTTTC
ATCATTCTCAAAGTATCAATTTGTGACTCCTACAGCATAATCGAAGTTCCATCACCAACA
CCTGCCAGCTTGTCCTGGCTATCACATTGTTTTGAATTGCTAACAATATAGCTACAATGC
CACAAGAAAAAACTTTTATCATCGATATGCTGCAGCACCTCAGTGGCTCAACATCAATGG
CATCGAAGTTGTGGAAGGTAAACGAAGGAAAGAACATCAGCTAGATGGACAGGTTCAGCT
TCCAGAGATTTCCTTCTCCTTAGCCTTGCACATATCATCTGCCGACTTGATGAACTTCTT
GGTCAATTCTTCGACCTGGAGGAAACATAATGTGTAAGATATTTACTACTCCCTCTGTAA
AGAAATATAAGAGTGTTTATATCACTACTTCTTTACGGACGGAGTATCACACAACATATT
TCCTTTCAGAACATTGTTCAGTTACTCACTTCCTTCTCGAGTCGCTTTATATCATCCTTT
GGCATGCTAGATGAAGATTTCTTTATCGTATCAAGTGCCTAGAAACACAAGGGAAATGCA
TTGAGATTTATTATGTAATAATAGGAAAGGGCATAAGAAAATCAAAATTGGATCCTAGTA
TTTCAGAGAAACATGAGTAGTCGTGAGGATCAAACGCTAGGACAAGCCATATATTCAGAA
AATATTACGGCACAACAGTGAACATTACACACAAGGAATACTGTAGAGTAAGAATACTGC
TCCCTCCAATCCATACTACTTGTCTTAGATTTGTCTAGATACGGATGTATCTAGACACAT
TTTAGTGATAGATACATCCGTATCTAGACAAATCTAAGACAAGTAATATGGATCGGGGGT
CTAGATACCCGTATCTAGACAAATCTAAGACAAGTAATATGGATCGGGGGTCTAGATACC
CGTACCTAGACAAATCTAAGACCAGTAATATGGATGGGAGGGAGTATTACATAGATCAAT
TTAGTACTCCCTCCGTTCCTAAATATAAGACCTTCTAGAGATTACACTATAGACTACATA
CGGAGCAAAA