Contig Data
morexGenes
Links



Map Locations of contig_1561416 (5090 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1561416

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11592 1 459 bp MLOC_11592.1 Available Available LOC_Os04g49990.2, FRAME:+1, EVALUE:4e-72, 13104.m05113 protein AT hook motif domain containing protein, expressed





CDS Structure of MLOC_11592






Contig Sequence (5090 bp)

>contig_1561416 5090 assembly3_WGSMorex_rbca.fasta
AGGGGGCGGCCGAGGAAGTACGGGCCCGCCGGGACCATCGTCTCGGCGGTGAAGGCTCAG
GCGGGCGGGCAGTCTGGTGCGCGGGGTCCAACTCGAATCCTGACGGCAAACACAGAGGAC
GACCCTCGGGATCTGGCAAAAAGAAACAACTCAATGACTTAGGTTCAGCTAGGACATCAT
TTACTCCTCACATAATAACTTTGAAGCCAAATGAGGATGTTGCCTCGAAAATAATGTCTT
TTTCACAACAAGGCTCACGTACTACATGTATAATCTCAGCAAACGGTGCGCTGTGCATAG
CAACACTCCGTCAACCAACAACCTCTAGTGGCATAGTGACATATGAGGGCCACTTTGGTA
TTCTCTCTCTATCAGGCTCCTTTCTTCTCGCAGAGGATGGTGACACTCGCAGCAGGACAA
GTGGTTTGAGTGTTTCTCTGGCTAGAAGCGATGGACGTGTTGTAGGAGGTTGTGTTGCTG
GAATGCTTATGGCTGCAACACATGTCCAGGTTGTGGTGGGCAGCTTCATTGCCAAAGGTA
ATAGAAAGCCGAAGGAAGAACAACCGAAGCGCGAGCCAACATCTGTGCCTATGCAGACTG
CTTCTGGCTTTGGTGCAGTAGCATCTAGCGACCACTCGGACGACCCAGGGAGCCCTATAG
GACCCAATGGCAACGCATTCAACAACGTAGGCCATCCGAGTCACGCTTCATATGCTCCGG
TTGGCTGGTCAGTCTCCGGGAACCAAGGACGCTACGACCCAGACATGAAGGTGGTGTCCT
GGTCCTCACAAAAACAAAGGGTAGTGGCCCTATCTTCGTGCGAGGCAAAGTATGTAGCAG
CGACGACGGCGGCATGTCAGGGGTTGTGGCTTAGTAGGCTCATTGGAAGTCTGACAGGTC
GTGCTCCGGCCAAGTTTGAGCTGCTCATTGACAACAAGTCAGCTATCACCCTTTGCAAGA
ATCCTGTTCATCATGACCGGAGCAAGCATATAGATCTCAAGTATCATTTCATTAGGAATT
GTCTTGAAGAAGGGAAACTTGAGGTTGATCACATTGGCACAAATAGGCAGCTAGCTGATG
TTCTCACTAAGGCGCTGAGCAAGGTGCGTTTCATTGAGATCCAACAGAAGCTTGGCGTCA
TGGAGGTCACTGGAAGCAACGAGATTAGGTGGTGAATTGTTAGGAATAATTCATTGCTTA
AGTAATTTACCGTTTTCCTCTGAATAAGCATGCATGCATCGCCTGTGATCTGCATGGTAG
TATTAGCCGGCATGACCTGGATGGAATGACCGTTTCTTCAGTATTTAGTTAGCTTTCTGT
TAGAGTAGTGAGAGTTGCGGTGAGTGTGTCGTAACCTTCTCAGCATAGCTCTTTTGGCAG
ATGGTGATCTCACCCCATGACTGCTTTACTTCAAGGCCCAAGTAGTAAGACAACAACACA
GGAAAGGTGTACTTGGCTACTTGCCGTTGTAGTTGACCCATGGTGCCGTTGCTGAGTAGC
ATTACCTTTGCTGTAGGGAAGGAAGGAGGGGCAACTCAACCTGAAATTATGTCCTGACAT
CCATCAACACCGGCCGATTCTATCCTACGTAAACAAGCAGACCCTCGTCAAGGTCTTGAG
TCTTAAGTCTTAACGCGTCCTTTCAAAAACATTCTAGTGTTGTACTCCCTCCGTCCCAAA
ATAAGTGTCACTTCTTTGGTACTATATTTGTACTAACTTAGTACTAAATTTACGACACCA
ATTTTGAGATGGAGGGGATAGTTGTTTTATTGTACTAGATTGATGCACTAGAGAGCATCG
TTATTTCATAATCCCTCCGTAAACTGATATAAGAGCATTTAGAACACTATTTTAGTAATC
TAAACGCCCTTATATTAGTTTATAGAGGGAGTGTATGACGTGAGCTTTAGTGTACGACGT
CGATGTCCATGACTTATGTGCAATGTTTCCTTATTTATCCATACAAATATGGTTGTTCGA
ATGGTAGAACGCCCGCAGGGACGACACTTGTCAAGCGGGAAAGGTTGGGATGATTGCTAG
AACAATCACTATATGTCTTCATTTATCGAATGATATGTATCCGAGCAAGATATTACATTA
CAATTTGTCACCATGTGATCCATTTGGCATGTCACAATTTGTTGAAATTAGAAAGAACCC
AAATATTGGTCCTCTTGTTTGAACATCTAATTCAAGGGAGTGAGGCTTGTGCTTTAGGTC
AAGTGATATGTATCCGAGCAAGATATTACATTAGAATTTGTGATCATGTGATCCGTTTGG
AGTGTCGCAATATGCTGATATGAGAAATAACTCAATTATTGTTCTTCTTTTTTGAATATC
TAATTTAAGCAAGTGAGGTATATCCTTTTGGTCAAGTTTTATAAAGTAAACTGGAGCCAT
AATTTATGTTTTAGTTTGTCATGAACCTGAGTTGTAAATACACCTCGAGTTCGTAGAGTA
ACTAGGTGAGACAAATTAATGAAGATAGAAATGCAGGTTGCCAAGTTTGCACAACCAGGA
AGTCACACTGAGATGTCCAATCCACATGTGAATTATCTCAGAATTATCACCTCACTGTAT
AGCGAGCTACTTTTTATTTTGAAGGAGCATATGTGAGTTTCCTTGTTTAATGGTTGCCTC
TCATGCTTCTGATGAAGTTTTGTGGCTAAAATTGATGTAATATTACTTTGTGATGTGATG
GTGTAGGCAATATTTGCCATCGTCCTTGTGAACGTTCTTACAGGAGTTTTCAAAATAAAG
CAAGAGAATCCTTGGATGTCAAACTTCATTCATGTTTACTTACAGCCAGGTATGCACTCT
AGTATACCAGATATGCATAGAATTATAAATATTGTATTTAGTCTGTTTCCTCTAATCATA
AAGACTAATACCCGAGCCATTGTGTTTATACAATTATGACATATGACATCTCATTATGTT
GGCATATTGACAGGTAGACACACATATGCGCAAAATATTGAGAGATTGGTCCACAACGTG
TGTAAGTATAGTCTTGTGTGGGCAACAAGCATACAGTGTCTGTCCACTATGGTATATCTG
ACTTTGCAGCGCTCTGCTTTAGTTAACTTCTATTTCCAAAGTTGGTTCCTTTCCTCTCCT
ATGTTGCTAGGTTTTACTAATGATCAGGTTCGCTTGAGCACTTGAGGAACAATGGGGAGA
CATCAGGGACGAGGCCCTGCCTCCTTGCCATACCCGAGTTCTCCAGTGTCAAGCCTCGGA
TGATTCCTCTAATTAGATGTATATATGTAGATATACCTTGATGTATAAGGACCCATTTTA
CTCCTTCTGCATCCTCATTACCAGTCCATGGACATGGTGTATATTGTACATATATACCAG
CATGGTGTTAGTTATAGAACAACTCTATTATAAATTTGGGTCATCTCCACAACCACCGCT
GGACCAAACAATTTAGTGGTAGTTTTATTGTTGATGTGTTGTACAACTGAGTTGTTTAAC
CGTATAGGAGAAAACTGATCTTAGTTCCAGGATTACGCGCTTTGATTATTTTCATGCATC
CCTGACCGTTCATGGTTGTGTATACCAAAATTGTATCATATGATATCCATATAATTGGTC
CTATATCAGATTACCCCTACAAGTCAGAGTAATATTATCTTGAAGGAACATGGCAACAAC
ACTCCAAGAAGAATGGAACCAGAAATCTTAAAAAGGTACTCCACATGAGATTCATAAATA
AAGGGTGTGTGATGACGCAATGAGCTAAAACAATGAGGCAATAGTTGTCGGATTTGGACT
GTAAAAGTGGTTTCTTTTTTTGATTAATTATTGTGTCCCGCACCAACCCCATTTATCTCT
TACCATTTCTCATTATTTCAAATGAAAGAACGCTATGAAAACAATGCTCTTCTTCTATAT
ATTGTCTGTATCCATTAGCTATCTCGGCGGAGTTGATTTTGTGAGTTCATGCATGAGAAT
CAGCAAAATAATTATTTCCTATTCGATGCATTTACTTGCTTATAACTATCTATTTCACAT
ATGTAATATGGACCGTCCTCTCTTGGAACTATATATTTCACATATGTAATAAGAATTTGA
CTTGATAAAGGGCAGCCGCAAAGTTGATAAGAGGATGGGCATAGACTTCCGACAAGGAGA
TGGAAAAAAGTGAGATAATGTGACTTGTCCCTGGTCGGAGGCAAAGTCGACAAGATTGCT
CGGTAGGAATGGCGTTACAAATGCTAATTCTCATAGTGATGTTGAATATGTAGCATAAAT
CATATTAATATTCCATGTCACATATTCGCTATTCTTGCTAATATCAATGTGTCAAACCCG
TGACAACTTGTTTTCTTGACGATATTAACATGTGATAGTGAACGAAGTTATACAATGCAT
GATTCATGTGGTGGTTGGTGGAGGTGATGTGCGTTTGAGATAAATAAAGCTCATAGTGGG
GAAAAATCCACATCACAACATTCACCATAGAATTAACGTGCAAACCAAAAAAAATGCATG
AATGTTTACTGGATAATTCGAAGGCACAGGACTTCACTAAAAAAGACCGTACGCTTATCT
TTGTTCAAAGTTATGACTTGGTTATTGAATACAATGTGATGAGTGTGGTTATTTACAATG
TGTATTATCACCTCTTTATCAAAATATATCAACAACATATTATGCACATACATAATAAAT
AACGTACATGTATATTTCATCGTTAGCCCATGGCAACGTACGGGCACTCAACTAATATAT
AGTAATAGTTGAATACCTGACGTGAACTAATAACAATCGTGCTCGTCTATATATGCTTCG
GGGTCAATAAATGCATCTTGATCATCACTATCATCAATAAATACATCATCATCATCACTA
TCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAAGAAGTGACAGGTCATCG
GCAAAAGTAACCTCTTCTTTTTCCGGCTCTTCCTGTTCGGGCTCAGGGGTTACGACGGAT
TGACTGTCACTATCTACTTCAATGTTGTGGGGTGAAGGAGAGCGGTTCTTGAAACGTTTC
TTCAACATACGTGTTTCTTGAAATAATTCTCTGTCATATGTGTCTGGGTT