Contig Data
morexGenes
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Map Locations of contig_1561310 (5697 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1561310

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11544 2 1369 bp MLOC_11544.2 Available Available LOC_Os04g01510.1, FRAME:+3, EVALUE:8e-163, 13104.m00062 protein DUF1295 domain containing protein, putative, expressed
MLOC_11545 1 697 bp MLOC_11545.1 Available Available None





CDS Structure of MLOC_11544






CDS Structure of MLOC_11545






Contig Sequence (5697 bp)

>contig_1561310 5697 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCGCGATCCGTAGACCGATGGGGTGTCTGATTTGCGGGTCCGCGT
TAGAGATGCCCTTAAGTTGAAATTTGTATGTGTGGATTCAAGTGTGTGAAAATGGCACAT
ACCAAACACTTCTTCGACAAATCACAACTCCCAAAATACCCTGTGCCCTTGAGCGGCACC
AACTATTGTTTTTTGCCTCCTACCAGCGCCATTGAGGATCTGCCTTGTCTTTTATGGCCT
TATCGTGATGGAAGCATGGTGGATCATAACCCTTGCCCGCGGAGGGCTCCCGCAGCTCTT
TTAGGTGCTTTTTAGAGTCTGTCTACAATTTAGAGAGTTTTTACTGTACCCTATACTGCT
AACCAGAGAGGAAGCGGTATATTAAAAACCGATCACTGATTTTTTGAGGGTAGAATAGAG
ATAGATTTTTTGTCATGAAACCTTCGCGATGTGGTCGAATGGCCAACGGCGGATAATATC
GACGAGAAACCAAGATGGCAAGCCCCGGCGCCATGTCCCACTGGACCACGACGCCTCCGC
CTCGAGCTCGACTAATTCGTCGCACCCGAGGACCACCACCGGCACCAGCGCACTCCCTCG
TCGTCTCGACTGCGTCCCCGGCCATCACGTCGCGTCCATCGAGCCCGTGCTAAGCTGTCG
CGCCGCTTTCCTGTTGTCTTCATATACCGTAGCATCGTCTCCCTGTCCGCCATGAACTAG
TCCCTGGAGCTCGTCCTGCATGCACACACCCGTTCGCGGTCCACGGCCACATCAACGACC
GTCATTCGCGCGTTGCAGCACAACAGTTGCTGGTAGTCTGCTCACGCCTCCCGCACGCAA
GCAGTCGAACAGCCTCGGGTCGCCTCGCCACCGTCCACAGTCAGCGCGATCCGAGACTGA
GAGGGCAGGCCGGGGCAGACCGCAGCCATGGTTTCGAATGCCCGGCATGGCCAGCCGCCG
GTCGCGGTCGAGCGTTGGGAGGCATCGCTTTGAAGGTGCACCTTGGGGCCCAGCCGACAT
CGCCACTGCGGTCCAGTCCCCGTAGGTCGAGACGGTCGGACTGAATTTTTTACTTTCCAA
AACGCCCTTAGGATTTGTATACTGGAGGACCTGGGCGAAGAAGTGCAAGATATACCTCTC
GCCATTCTATTGGACAATTGCAGCAGTACGCAACAATCGTCATCATTAAATTTCACTAAT
GGACGATCAATATTTAACGGAGGTATCATAAAAGAACTCACAATTTATGTCCTGCGGACC
CTGCGACGGCAACCACCAGATGCAAAGGGTAAGTAGCAACACCATATACTTCTATGGGCC
ACTGCAAGGAGTGGTCGGAGGTAAGTGGCAGCGTTGCTGCAACACTACAGAGAGTGATGA
ATGGGGGGTTGCTGCAGGGGCTCCATCGTGATGCGCGAGCACCGCGTCATGCTACAGGAA
GGGTCGACACAATGGAGTATCATTGGGCCACCATAGCGTAGCAACTTCAATGAAGCATCC
CCATGCGACCTCATGGTTCTTAGACAGTGCTTCACTGGAGCATTGCTGGGGACGCCGGAG
CTGCAATGAAGCGTCAACAATGCTGCATCGGAGCTACGCAGGGGCTACCGGAGCTGCATT
GGATCGTGCTGCATTAGAGCTTCGCCCAGGCAACTGGAGCATGGCCGGTGCTCCAATGGA
TCATGCCATCATTGTAGCTCTTGCCATGCTGCCGGGAACGTGGACACAAGAGACGTTGCA
GGGTAAGATATCGGCATGTTGGGGCGGAAACGAAGACATGTTCCATGCATGGTCATGTCA
CCAAGGATCGAGTGGATCAAATTGTGATGTACTCCCTCCGTAAACTAATATAAGAGCATT
TAGAACACTAAATGGTCTTATATTAGTTTACAGAGATGTTTTAAATGCTCTTATATTAGT
TTACGTAGGAAGTACATGAGAAAAATCAACGCTAGGCTAGGTGGCTGCTTTTTTTTCTTA
AGATCTTTCCTTAAGATCGGTCGGTTGATTTATAGCATCCATCATCCAACATATACACGA
AAGATTGGTCCCATAGGCAACAAGACATACCCCTCCAACCTCCACGTCTTGCTCGCCACA
TTGGCCACCCTACATGCTTCAACGATGGAATCCTGATAAATGTCACATATGTGACACCAA
GCAATTTCGTCCTATCGTTTATTTATGTCAACTTTACTTATCAGAGGATGACGATTTTAA
TTGAGAAGCATGGTAATTTTCTGTTTGAATGACAATTTTTCGTTTCTTTCTATTCATTTT
TCTTTTGGATGGCGATTTTAACTACAAAAATCCCAAGTTCTACTGGGTCCAACGCTATAA
AACCGGCGCCCATGACACACAGCATGGACAGCAACACACACCCTCTCCGTTCTCCACTCC
CGCTCCGAACACACACCAACTCGCCGCCGAGACGCTCGCAGCGCGGTCACCATGGCCGGC
GGCGGCGGCGGTGGCAACCTCAAGAACATGGTCATCGCCTTCCTCGTCCCGCTCCCGTCC
ATCCTCTTCTACCTCGCCTTCGTCCGCCCCCAAGACGACGACCCGGTGTCCTCGTGGTGC
GCCGCGCACCCGCTCCTCCTCGCCAACGCCCTCTTCCTACTCAACGTCGACGTCCTCTTC
TGGCTCGTCGGGCTCCTCCTCGGCAACAACTGGGTAAGCGACCCCATCTCGCCGCTCCAA
TAATTGGTTGGCGATAACTGCTGGCTCTATGCCTATGTGTCGCTGGATGGCTTGCACTGA
GCCTGTTTGACGAAATGCGTGGCTTGCGTTTGGTGCAGCTCATCGACCTGTACTGGACCG
TCATCCCGGTGATGCTGCTGCACTACTTCCGGGCGCACCCGGCCGCCGTGGCCAACGCGG
CGAGGTCGGCCGCGGCGGTGGCGCTCACCTGGGTGTGGAGCGCCAGGCTGACGCACAACT
ACTTCAGGAGGGAAGGGTGGCAGTGGGGCAAGCAGGAGGACTGGAGGTTCTCCGAGATGC
GTGGGCAGTACGGCAAGACCTGGTGGTGGATGTCCTTCTTCGCCGTATACCTCTCCCAGC
AGGTAAATTCAGGCTTGTTTTCAGAACTTTTATGAAAATGAATGAAATGTGTTTGAAGAA
ATGTCATGACGGTATTTTTGGTATAATCAGCTGGGTCAAAATTCATGGTGGTAGCATACA
TGTTACTCCTGTTTGACAAAATGGCGTGTTTGTTGGATGCAGGTGTTTCTGATTGGCATA
TGCCTGCCGATGTACGCCATCCACTCCAGCGACCAGCCATTGGGCATATGGGACCTCGTG
GCAACAATGGTCTGCATCGCCGGAGTTGTGATCGCATACTTTGCTGACACCCAGCTGCAC
GAGTTCGTCACCAGGAACGAAAAAATGAAGCAGCTGGGCGAACCGACAGTCCCCACCCTC
GAGGACGGCCTGTGGGGGTACTCGCGCCACCCTAACTACTTCGGCGAGCAGCTCTGGTGG
TGGGGCGTGTATCTCTTCGCCTGGAACCTGGGGCAGCGGTGGATGTTCATCGGGGCGCTT
GTCAACAGCATGTGCCTCGGCTACGTCACCGTGCTCGTCGAGCGGCGCATGCTGAAGCAG
GAGCACCGGGCAGAGGCCTACAGGCTGTACCAGAAGAGGACCTCTGTTCTGATCCCCTGG
TTCAGGAAGTCCATCCCTGAACCAAAGGAAAAGGAGACCTAGGATTCCAGGTGTATTTTG
TGTTGGCCGTGTTCCTTCTCCGTGTTGCTCACATGTCGTTCCTTCATGTCGCGTCAGTGT
CGTGATTATGTTGCGCTGTTTACTGTAATTAACTGTATCAACTGTAAAATGTATCCTGAT
CACCTGTTATTTTGTGTATCTCAAACTTGTTCATCATCTCCATCAGATATATGAAACTGA
TTGCGGATTGTTCAGACTCAGATCTTACTGCCAACTTTGCGTTTGCTCTGAGAATCATGA
CATGAAGTTACCGATGCAATATGGATTGCCAAACCAGGTCAGCTGCATTTTGGCCATCCC
CACATTTCCCATATATTAACACAGCAAGATCTTTTACATCAAATGTAAGAAAAGTTAGTT
TGTCCGACAAAACACTCAGCTAACTGTCAGTCAGTTTTGCTTCTCTGCAGCCACTGTGAC
CTCCTCGACGACGACGACGACCTCGGTATCCTTGTCAGCCTCCTCAGTCATTGGTACCAG
CAGCTCGCTGATCACGGGGATAAGCTCTTCAGTCACCTTACAGGCGTCCACACCTTTCGG
TGTCGAGAGATCGACCAATGGCGCTTCAACAACAACGATCTCATACTTGTCCTCGACAAC
CGGAGCATCGGATTCTACGGGTGCAGCGACAGCCTTGGGGGTGACCGGCATGTCATCCAC
CATGGGCTTCTCCCTCTCAGGGAAACCCCTTGGACGGCTACCACAGGAACCCATAGCCCG
TTATGGGTTGCTCCGGCTGTCGATCACTGCCGGCACCGACCACCGACCGGCGCCTTGGTG
CCTTGGCAGCAAACTCAGGGAAGAATGGTGGAGGGGTACCGACGGGCGAGGATGAAGGGC
TATTTGTAGTAATTTGTTGGACAGTAACAAGAGGATAAGGAGCAGACCATATTTAGGACA
TGCTTTGGCTGGTTTCCCGGGCTTTTCTGATGATTCAAGAACTTGAATGGTAGTTATTTA
TCAGCTATTACTTGCCGCCGTTTTGTTGCGTCCCGCGTTGTTTCCTTGGTCTCCCGGAGG
TGAAAGGAAGGCAGCACCAATGGACACAAGGAACATATGCTATACTGGTGGATTGTTCAG
CACACAAGAAAGTTTACGGACTGGAGCAGGATCCCTGTCGAGGCGAGCGCTCATCGATGA
GCTGAAATTTTACCGAGATTTGCACACGGTCCACCGGGATCGGGCCAGGTTCGGAGATAA
TTGTAAATTTGGTTGAGCTTCAGTAAAATTTAACGGATCGAGAAACGGTGAACCCCGATC
AAGATTGGACATCCCAAACAAAGCTCGTGAACATCAATGATTGCACCTCATCAAGGACAG
CCAGTCGATCGATCACATGAAGATTCATCTTCATGGATGAACATCAGCTTTTCAAGGTAC
ACTTTGATCAAATGATGCGGTTTGTGCTTAGTTACATGGTTGCCTTTGCGATTTTATTCG
ACAGGGTCCCCTCCCCACAGGTGATCAACTTAAGAATCAATCCTATACTTAACAGCTAGT
TGTTCATCAGGCAGGGTAAATTAGTATAGACTGCTGAACTTTTGCCGAAAGGGTTAAAGC
GAAAAGTCGGCGTGAGTAGCTAGAGCAAGTGATGGATCGCCGCTTGGATTTTAAAAACCC
TCAACTGATGCTTCAAATTTCAGTCTTTTTCAGGCTGTCCAGACTCTGTCACATGCTTGC
ATAGTTGCATCCTGTGCTGCTTCTTGCTGTTGCTCTGCTTTGCTGAACTTCTTGATTTGT
GTCTCGTAATTGTAAAGATACAATTTTTTATTTTTTTTTGGATGAAGAGATTCAGAGCCT
GAAGTGCTGGAGCGCAGAGGTGCCGGCGAGGCCCTTGACCTTGTAGTACTGCCGGACCAC
CTCCTCCACCGTCGCGCTCCTGTACCGCGCCTCGTCGCGGACGGCGACGATCGGCGCTAG
CACCCTCGTCGCCGCCGCGGCGCGGTCCGTCCGGAAGAAGCACGCCACCGAGACCCG