morexGenes - Barley RNA-seq Database

Contig contig_1561294
Source Contig contig_1561294
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561294 (7810 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1561294

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11530	1	3887 bp	MLOC_11530.1	Available	Available	LOC_Os12g38110.1, FRAME:-2, EVALUE:0.0, 13112.m03924 protein importin subunit beta, putative, expressed
CDS Structure of MLOC_11530

Contig Sequence (7810 bp)

>contig_1561294 7810 assembly3_WGSMorex_rbca.fasta
TACTCACATTGGACCCGGTGCTCAGGGAGTCAAATGATGGGGAAAATTAGATTCAATTGT
CAACTGAAATTCTCAAGCCAAAAGATGGAGGCATATGTTGTGTTTCATTTTGCTAAATGA
TATTAACTAAATGGTGCATCAATCCCATAAATTGCGATCATTTTCAAGATCTAATTCTAG
TTTCTTATTATGTAGTGGAAACGCCTCACAATCTTCAGTTTTACGCTTACGGTTAAGGAA
AGAAATGTTCTTGGTGAATGCAGACTCTGGTACCCCAAAAATTTGTATGCAAGATGAGCC
TACATGACTGCCAATCAAGCAATTCACAAACGGCAAGGAAGTCAAAAGTGACGCTTACAG
GTCGTGCAACAATTGCTTCTCTTCCAGGACTACATACATCTTTTTAGGATCCTAAGCCAA
GGAGAAGGTATAACCCATCTCCTACTCTGCAATACCGCGAATCCCCTACCCATTTGATCC
AGAGGATCTATCAGGGGGCCCTCGCAAGACAAAGCTGATCCCTGGCGGTCATTCAAACTT
CAAAGTAGAGTGTTTCTGTTGTCAATAGCCCCAAATGCGCTCTATGATATTACAGTACTT
ATTATTTTTCCAAAATGGACATGCGCTCTACGATTCACACACACATGAGCCAGGGCAGAG
CAGGACGAAAAAAAGAGACAAGACCCACATCACTGAACACGTTCATCATCGTATCCTTGT
AGTATACACAGCGACTCATGAGATAGGAAGGCGGCAGAGTTCCACGCAATTATACAGTTC
CCGTAAATAACAAATCCAACTCGACAACTGCCCCAAAATAAAACCACCCCGAAACCAATG
ACTGTTCTTTTCAACCCGCCAGCACACAGCCTCAATCTATGAATCTGAAATGGAGCAGCA
GCAAGGATAACAAAAAAGGACTCAACCCACAACACCTGAAAATAAACCAACGCATGCAGG
GTCTTGCACAACGGCATGCCGTCTAAGTGTTGACCACAAGGAAACCTTACAAAAAAAGTC
CGGTAACGGATGCAGGACAATGCAGTATGAAAAAGGAAATACGACATAAACAAAGCTACC
AGCTCGTGAGGGGCATGCCCAACCTGGACCTTCTGAGCAGTGCAAAATTATCCCGTGACA
GTGCACGCGGGCCCCTTTTGCATAAGGGATCCATAAGCAACCGGGACTTGTAACCATACG
ACCAAAGTTCAATGCATGCAATGGATGCAAGGGAAAGCAATGGCACACCCAGACCGGAGG
CATGCAAAGCCACGCCAACGAACCATCGGCATGGCACCCGACCATATAAGCTCATCTAAC
CTCCAATAAGAAATTGAAGGTTCTAGATGCCTTTAGCAAAGTTAGCAGGCAGCCAACTTG
AGCCCTCTTTTCCACAGAAGTGAAAAAGGCTGGGCTGACGCATATACTGATGCATGAGTT
AGTGAGGACCCTTCGACACTCCTGTTAGGATGGTGGACTTCCCCAAAGATATGATGCAAC
CGAAGACCCAGACTCGACACGTGGATGGATGCATGTGCAGACTCGACACCAATGCCACAT
CAACCTGAAACTGCACGGCTGACTGCAATCCTTGCCCAGTCAGCTGATTCTTTGACCAGA
GGATCATCAGATGATAGGCACTCATCCAAAAACTCCTTGCTTGAGGTCGATTGATTGATC
AAGGGACCAGCATGAACACCCAATGTGTCTGCCAGATCTCCCAAGACACCTATTGCAGTC
TTCATCACAGAATCATCCCTGAAACAGCAAGAGATCATTCTAGAAAATTATTGTGCTGAG
TTAGATTCACACTGAGCTGAAATATTGGTCAATGCTGCAATAATACTTCACTGTCCGTGC
TCATGGTCGCTAAAAAAAGAGTGGGGTTGACTGGCCAGGAGGCTTAAGGAGGAGAGATTC
GATTCTGGCAATAGTGTAAGGTGTGTGGACACTGGACACACTATCATTAATGGATGTAGC
CCTTTCCATCATAGTGGCAATTCAATCATTCAAACAACATACGTTACATAGAACAACAAA
AGTGACCAAGCTTAGTGCACAGTAAGAAATAACAAATTAGTATCTGACGCCAATTGGTAA
ATGCAATCAAAAGTAGCAAGTCATAATCAGAAGTTCAACAACACAGAAATTTGCAAGGCT
TAGCTCTTAATTCCTAAATCACCTCAGATGTATCCAGCAAAATATTGTTACAACAACAGG
CCTGTAACGGATTATATGGCTATAACACATACCAGGTATACCCTCATTTTCGGAGAAAAT
TGCTTATATATCATTGCAATGACTCCTATTTTCATCATATGCCTACGATGAACACTATTC
ATTCTATCTGACTCATCTGTTCATTATTTTCCTTCACTCGTTGGCCAGGTGTTAGTGAGT
TTTGCCCTGGTTTAGCAGTGTTGCTGATGCATGAATGTGTTGCTTAGGTGGCGCTACTGC
CACCATGGATATTTTACAGAGAAGCAGCATTACATTGCAGGTACCCGTGCAGGAGCACCG
AGCCAGACAAGGCATATACATGTTGATACATGGCCAGTTAGGCCGCGGTAGTGGCGGTAG
CAATTCATGAAGTTTCGGAATTGAGTAGTGCAGAAAGAACCGGGAATCTTTTAGTGGCAT
ATGATGAAACATGTAGTTATTCAGCACTCCCTAAGATACAAGGCATATAAGTTTCATCCT
AATTCAAACTTCTTTATATTTAACCAAGTTTATATGGAAAAGAATCAACATCTATATTAC
CAAATCATATATGCCTTATATTTTGGAAGGATAGAATGGCATATAAGAACTTATATGTTT
CCAGAAACTAGCTTGATTGAGTTAAAATTGCCATAATTGTCAATTTTCCAGTACTTTGCA
CCTTTTATATTTTTCAAGCTACAGCTTAGGCATTTGCCTGCCATACAGGAAAAATGTCTA
ATTATTGTTATCTATGCATTTGCATGATCAGTTTTCAGATTTCAGCATCCAGAAAGCAGG
AAATATATCATGAAAATAAGTGAGAAATTAAGGAAACAGAAGGTATTCTAGACGACTTAC
ATATCCTTGCCATTATGAAGAGCGTCAAGGAACTGAAGAATATGTGGGGCATACGGCATC
AGTAACTGCATCTTAGGGGAACCCTTGAATCCTTGAAGAATGCCAGAGTAGGCCTCCAAG
ATGCCATTCCTTAATTGATTGGTGTAGTCGAGCATTTCATCATCAGCTGCGGTTGCATGC
GCCGACAAATCTGCTGCACTTTGTAGCATGGGCATCGCATAGATCAAATACTTCTCAAAG
TTCTCCCCAATTGCCAGTGCAATATCACCAAAGCACGAGAATATAGGTGGTTTTACAGAT
CTGTGTAACTGATTGCTGGATAGATCTTTCAGGAGCTGGGTCATGATGCCGTCACAGTAG
GGCAAAATTTTGTCCTCCAGTGCCCTGCACAGGTCACCCACAACACCCACTGTAATAGCA
CATACCTGATACTCTTCAAAGTTTTGAAGTCCCATTTCCAAGTACTGGTAGAATTGTGCC
ATGTACTTTGTGAAGTTTGAACCGGCTGCATATGCCAATGCACCAATAGCAAGCATAGCC
TCCTCATGCACTGTGGCATTTCGACAAGCAAAAACTCTCAGAAATAGATCCATCATCTGA
TCCCCATACTGCAAGAAGGCAAACTTTGTTGACTCCATCCCTCCCAACTTCTGGATAATG
ACCTGCAAGCAACCACAGAGAAGGCCCTGCAGATCGCTCCGCTTCTCCCTCTCATCAGTT
GACAATTTTCCTGCTTCAAGTGTCTGATGGAGTTCCATCATAATCACTGGTATCAGCTGC
AAAACAATAGGAGCTGTCTCCTCAGTGGAGCACCTGACAACTTCATTTAGAGTTTCATAA
GCTGCGGTACGCAGCCTGGATTCCCCAGCATCTTCTCTGCGACTGGTCACAATAAGGCTC
TGAATAATATCTTGAAAGAAAGGGGCTAACGGCGACGCCGATCCAGCATCCACATAGCCT
TGAGCAAGGAAATAGAGTGCCCCACATGCCTTTTCTGCCACATTTGGCACATCCTTCATG
CTTTGAAGTAGCACAGTAAGTATTTGCTGACAGTTCTCAGCTGTAATAACAGGAGCAGTT
TCAAGTGCAGAACCATGAAGAAACTCAAATATTCTTCCGAGGGTCCAAGCAGTGGTGTCC
TTCACATGGTTATTTGGGTCCTTCAACAACGCAGACAACATAAAATTCAAGGCGACATTA
ACTAGAGGGGCCAGTTTATCAGCTGATGGACCCTCCAGAATGGATCCAAAAGCATATGTT
GCAGCCTCTCTTTGCCTCCATTCAGGTTTCGTTATGTTCTCCTCAACAAAAGGCATCACA
AGAGGAACAACATCATCCCCAACAGTCCTCGCCACCAGGCCCAAACAAGTACCACCAGCC
ATTGCAAGGTTCCAAGCACCTTCATCCAAGTCTTGGTCTTCCTCCTGTTTGAGGAGAGTC
TCCAGCAGCATTGGCACTAAGGCAGGAAGAGCTTGCTTGATAAAATAGTAGCAAGGAACA
TCAGAGTCAGCTGTAAACTCACTACTGTAATCGTCCAAAATGTCGATTTCCTCATCACAT
ATGGAGCTCCAAAATTCAATGGCCTGAAGTGCAACTGACTCCTCATCTCCTCTCACAGCC
TTTGCAGTAATACTAAATATGTCCTGCATGTATGAGGCCAGTTTATCGTAATAAGTTGAT
GAAATAGCCACCAAACACTCAAAGGCAGCCTGTCTTATCTTCACCTCTGGTGACTGTGTT
GCTTCGCATACGACTCTCATGATATAATCACGCTCCATGTCATTGGAGAAGTTAACCTGA
GCAAAGCCCAACGCATTATACAATGCCCGTGTGGCTGCAAGTCTCACTTCAGAGTTCCCT
TCAGAAGCATTCATACCCTGAACAACAGCCGTAAGTATCTTGTTGACTTGGTCTTGGTCA
ACAGCTTCTGGAGAAACTTCCTCACATAAATAGCCAAGTGTCTCGAGCGTCGCCTGCTTG
ACATTTGGCTGGACCTGATGTATGTTTGAGAGCAATGACCCTATAAGCTCAGGCCATTGC
TTCTGAGGGATCTCAATGCCAGCAATCTTTGCGATGACTTGAGAAGATGTAGATCTGGCA
CTTGCGACAGGAGATGAGAGAGTTTGCAGCAGCAACGCTTTAATTTGTGCCTTGACACCA
GCATCCAGTGCCAGCCATCTCTGGAAAAGTTCATTCTTCCTGTGCTGCTCCTTTGCATCC
AGTGCATTCTTAAGGATCAAACCAGCCAACCTGCGGCTCTCCTCAGGTTTCTCGTTAGTG
GCCAACTCACTTGAGAGAGAGAGCAAGAAACCAGGGAGGTTTTGCTCCTGAAACTGCTTG
AGGCTTTCTTCAGCATGCTTCCTAATTGAGCCATCGGCAGATTGCGCACTCAAAAGTATT
TGAGTAACATCCAACGACATGTCGACTGTGTAAAACCAAAATAGAGGAATCAGATATACT
TCATGACATAATAACTCCATGCATCATCAAAGAGATACAGCCCCTCTCAGATGTAAATTA
CACAAGTAAACCTGTTTTGTGTACACTAAAATCTTATAAAATGGCAATGAGACACACGAT
CCGCATATTCAACTTCATCTGGCATCATAACTTACCGATGAAAACACAGACGAAATAGCA
CCATATAAATTGATTCTTACGAGCAAACATTTAATCAAGAAACTATCAACTACAAAGAGG
TATGATTACATAGAATTTCGTATAAGTTCCTTAAATGAGGCGATCATTAATTGCACAGAA
TTTTGTAGAAGTTAAATTGCATGAATACGTCTGCATAAGTAACCAACTCCACAGAGGAAA
GACAACCTTATAAGCAAGAAAACAATCAGTGGACATCAATCCCACAATCTAAACAGCTGT
ATAAAATCTGACGAGTGCATAATGCCATTGCCATACCAGTTCTTAGCTCAAGGAGGATAC
AGATATCTGGGGAGTAACATCCTTTTAAATGGAACAGGTCCTTGAGTAACACCTAAAGCA
TCTGCTGACAAGAACTTTATTATACACCAGTTCCTGAGAGTACTATTTACTTTCTACCGT
TGAAGTAGCCATTTACTCCTGTGTATGTAGACCACTTATGCATACGTGGATACTGCAAGC
TACGGCGACAAATTTCCGCCATTTTGCCATAAATACTCCACCAAAATAGAGCAAAAAGAG
CTATCAACCGAATCTAGGGTTTACAAATTCAACATGTGTACCAAATCCACCTTAACACAC
AGCAAATTACAACAGATCTGCCTTGTAGTTCGGCGACAACAGAAGAACAGAACACGGATA
GAGATGTAGAGCTTCTGCGTCCTACCTTATAGCCCCCTACTGTGAAGGGGAGGTAGTCGG
CGGCGAGGGGCGGGGTGGAGCTGGCCGGCGCGGGGGACCTCAGACGGCGATGGTTGCGTG
AAAGAGTTGTGGTGGTAGCTCGCCGAATCGGATACGGAGGCAGCTCGTCGGTTGGGCGGA
TTCCACGACGAGGGAGGCGGCCGTGGCGGCGGGTAGGGAGGCGGCGGCGGCGGCGGCGGA
GAGGAAATCAAATAATGTGGGGGAAAGAAAAGGAAAAGGGTATCTTTGGTTCATGTGCTG
GGAGATGCGAGGACGGTCGTGACGGTCAGCCATATGACCTTTGATGGACGGTACTGATGG
AAGACGGTTCATGTCTGTATTTCGGATTCCCAAGAAACTTTGCAAAATCATGTGTTTCAA
AGGACAGAGAAGAGATGAGATTTAGAGAACAGAATTGCTTTAATAAGGCTATATATGCTA
GGGAAACAATAATTTAAAGGTCGATCTTGGAGCCGGAAAGTTTACGTGCTACACAGTTGG
TGGTGGCTCGGGACATGGACGTCGGGGTGGCGGCCCTGGAAGATGGGCTACACGGTTGGC
TTTCCGGCACGCTTCATGGTGGCGGTGATGACTTCATCTCTTGGTTGTGTAGGCAGCAAG
GGATGTAGTGACGGGAGGTGCTGCACAGTGACCGGATCTAGTTTGACTGGGTTGACCTTC
CTCGTGGTTCAAGTCGGGATACCTCGTGGTGGTGCAGGTGAGTTCCCGATCGAAAGCTTC
GCGCTTTTGGCGTCAACGATGGTGACGCTCGTGAGTGTCGCGTTCTTTCTGAAGATGTTG
TCGTGGACTCGGCCTTTGCAGTAGGGCTACGAGTGAAAACTCTTGTATGTGTATGGACTC
GACAACGGCGACGCTTTGCACCGTCACCTTCTTGAAGGCGTTGTCGTGGATCTCAGACGT
CTTCGGTCAGGCCTCGATGAAGTGTTAGGCTAGTTGTATGTTTCTTGTTGTATTTGTCGA
TCTGCTTTGTAATAGGACCTCCTCACCACAATGTATCATTCAACTGTGTACTATGTGTTG
GTGTTTTATATATAAAACGGAGCGAAAGCCTATTTCGAAAAGTTTATGTGCTAGAGTGTT
GAGGAGTATAAAAAAAAATTCTTGATGGACAAGTGTCAAATGTTTCTAAGACTTGGCTCG
TCACTTTATTTGGCAAAGTATAATGACAAGATTGCATATAGTTTAAGGAAGAGTTTGATA
AAAGGGGAATCACGCGAGTGGGGATGGGCAGCAAATTGACGTATGGAAAGAGATGCGGAT
ACCTTTGAGTACAAATGGTAAAGTGTTCACTTCACACGCGGTAGGGACATTCTCTGGATC
GACAAAACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGAAACCATTAAGGAACAC
TATTTTGACA