| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_1561284
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11526 |
1 |
1273 bp |
MLOC_11526.1 |
Available |
Available |
None |
| MLOC_11525 |
4 |
1765 bp |
MLOC_11525.1 |
Available |
Available |
LOC_Os01g25440.1, FRAME:+2, EVALUE:7e-33, 13101.m02694 protein thiamin pyrophosphokinase 1, putative, expressed |
| MLOC_11524 |
2 |
604 bp |
MLOC_11524.1 |
Available |
Available |
LOC_Os07g17330.1, FRAME:+2, EVALUE:1e-48, 13107.m01817 protein B12D protein, putative, expressed |
CDS Structure of MLOC_11526
CDS Structure of MLOC_11525
CDS Structure of MLOC_11524
Contig Sequence (9288 bp)
>contig_1561284 9288 assembly3_WGSMorex_rbca.fasta
GCTAGGGGGAGCCGAGAGAGAGCACCCCCTCTGTCTCGGCTATGGGGCGAGGCCGAGAGC
TCCCAGTCGGCCACAGGGTGGCCGAGGCAGGTATATTTCTCGAACTTTTTTATTTGGTGC
ATTATTTTTTTAAAAGAATAAAAAAATGCAATATTTAAAAAAAAAACCGCGCGATGATGT
AGTCGGGCCACCGGTGGAACCTGCAGGTAGGACCATAGGGACAGGGGGCGTAACCGTGTA
GGAATTTGCACTCAACCCAAACCAATGTCGGTTGCGTCACGTCACGGCACGGCGCGGGCG
TGACCAGTTCACGTGTCGTACGCGTCGCCAAGCAGCGCATTTTTTTTTTTCACCGCGGGC
TGCCGAATCCCGCACCCGTCCGGTGTTTGCAAAGCCCACGTCCCCCCCGCACCGCGTCAA
CCGAACGCGCCTCGCCCGCTCGCTATATAGCGACCCGGGTTGACAACCCTCTCCCGTGCT
AGTAGTCGACAACCGGCAGCCAAAGGGATACTCCCGCAGATCCATTCTTGGGCGAGAAGA
AAGAAGCAGACAGCAATGGCGGCAGGCGCCTCCTCCGCCGCCTGGAAGCGATGGCTCCGC
CCTGAGGTACGTGCGAGTGCGACCCAAATCCCCCGCTCCTCTCTCTCTCTCGGTTCGTAG
ATCGGAGATTCTCGTGATGGAACGAAGTGGCTGGGGTTTTCGGTGGACGATTTGATCTGT
TTTCCTCGCGATGAATCAATCACACGCGCGCTGGTATGGCCGGTGCAGGCGTACCCGATC
TTCCTGACGACCGGCGTGGCCGTCTCCATCTGCGCCATGCAGCTCATCCGCAACATCACC
ACCAACCCGGAAGTCAGGTACCCCAACCCAAGCCCTATCTCGGCGGCGGAGACCCCGATC
TGACTGACTTCAACAGCCGATGGTTGACGAAACCGTTTTCCGAATCTGAAACCGCGCCGC
CGTTGGTTGTCTGTCGGTCTGTTGTGCAGGGTGACCAAGGAGAACAGGGCGGCGGGGGTC
CAGGAGAACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGATTCAGGAAGTTCATCGAC
CGCCAGCGCCCCCAGATCATGCCGGCCATCAACAACTTCTTCTCCGACCCTCCCAAGTAT
TAGTTCGGTCCAGGCAGGCCGCGAATACCTCTCTGCGCTGCTCGTTTGTTCCGAAGATTG
TGCCAGGATTTTAGATGCTGTCTATGTTGTTTGTCATAATTCCAATCGTTTACATGCCCA
TGGATTGATTGCCTGGCTGGTACGCTTCAGAATCATTATTCGAATCGTTGCCTGGCCATG
GAAATATTTGATCATGTTAAGAGTATTACTTTTATAAATGATTTTAAATCTTTGATGGAT
TTTGGTTTTCTTTTGGGCAAGCGTTAATTAGCGGCCCTGTATTGTTGTTGTTTAATGCCC
TTCAATTGCTCAACGGTACTCCCCGATAAAAAATATGTATAAAAACGTCTATAAATCACT
AAAATAGTTATCTAAACGGTTTTCTATTTCTTACCTCGGGGTAGAACCTAGGCCACAGCC
ACATGCACTATTTTTTATATGAACCATGATAAATATATAGCGAACGTTCAGATTTTAGGC
ATGTCGTGTTGAATGTTTTTCATAACAATTTTAGTTGACGCGAGGTGCAACTTTAGTTGT
TAAACCATGCAACTTTGTTTTAATTCATTTATTTTATTAGAAAATTGTCATGTTTACCAA
CCTAGCGTGAACTAAAGTTATCATGAAAAAACGGTTGGTTTGCCATGCTTAAAATTAAAA
TGTTCTGATTTTATCATTTTCGTTTTAAAAACATACCACATGCACATAAGTAAGAACATA
ATCGCAAAAACCTTTGGGCCTCTTCTCTTCTATAAGCCTAGAACCCAACAAGCCCAATAT
CAATATTCTTACAACAGCTCTAGTCTCTTTTTTTTTTTGGCATGGTAATGTGTCTCATTT
ATAGAATAAGTTCAAGTTACAAGCCACATAAACACCGTCCTTACAGGACTAAAAAGATAG
GGTAATCATATGCAAAATACCATCGCATGTCTCTTTTCGTCGATACCATCGAAGCGGTCA
CCAAAGGAAAAGAAGACATCACCTCTTCGCATGAGCTCGACGCGGTTCTATCGTTGATCT
ACAACTTTACACGGACCTTCAAAGTAGTTTCCTAGAAGCAAAACCATTGTCGTTGAAAGA
ATCATACCGGGGCAACATGTCCCCGGACACGCCATCGAACTCTAGATCTGACACCCTTGC
ACGACGATGACGACGACTGACACCCTTGCACGACGATGACGACGACATTAGAGGAGGAAA
ATAGAAGTGTCAGCCACCATCCACGAACCCACTAGAAGATGCGAGCTGTAACTTGTGTAG
ACAACCATCTACGCGTACTCCTAAACAACAAAAGCTTCCTGCTCCATCATCACGTTGGAA
ACAATGTCGCAACAACGGGGACAAAGCACAAAGGAAATACACACCTGATGGAGTCGCCGA
CACTATCCATGAAACCTAACGCCGCCGGTCTGAAGGATCGGTAAACACATGATGCCACCA
ACACCGAGATGCCGCCATGATGGACACCGCCGGTATGGGAATGGAGCTGAGGCAAATTTA
TTGGTTCGAGTGTCGCTCCCACCACCCCAATGGTGCACCATGACTTACAAATCCAAACCC
TAACTATAGGCCGGAGGAATGGGCCCCCCTCCCTCCTGTCGCCAAAGCAGTAGCCGGAGG
GAGAGGGGGACATTGCCCTATCCGGTTGGGACCGGTGGAAGAAGATTGCCTCCCTAGCCG
TCTGGCTCGTGGCATCGGCTAGGGTTAGGAAAGATGTCGCGGCTTGCTTTGACGAGAGCA
GCGTTGCACATACGTGCACACAACAGCTCCAGTCTATCTAATTCAGAAAAAACTGGATAT
TGGGAGGGTAGTATTTAAGGTCTTGTACAATGCAGGGTGCTTAAAGAAATAATTCTTTGA
AGCACTATTGCATATTTGTAGAGGGTAGATATTTAATTAGGCATCCCTTCTATAGATATA
AGCATTGATGTTTATTTTTCTAAGCATGTCTTTAAGCACCTTGTATTGTACAAGGCCTAA
CCATCATTTCTCACGTTTGTTTATTTTCTAACCAGTTTAAATGAAAACAAAGATAATTTG
GCTATTGGCCAATTCGTTAAACACGTTGTGTGCTTATATATATAAGATAATTGATGTTTA
TTTTTCTAAGCATCTCTTTAAGCACCTTGCATTGTACAAAGTCTAACCATCATTTCTCAC
GTCTGTTTATTTTCTAACCATTTTAAAATAAAAACAAAGATAATTTGGCTATTGTCCTTG
AACACCTTGTGTGCTTATATATAAGACAATTGGTTATTGACCATATCGTTGAACACATTG
CATGCTTCACCGGCCGAAGAGTGTCGTGGCGCATCGGAGTTCACCGTCATGGTCGGAGGA
GGAGCCAACGAAGGGAGCGCGACATGACTCTCGAGATGAAGTGGGAGGTTTGGTGACTTT
GACCACGAGCTTCGGCTCGTCGACAAGAGATGGTTGTGGTGGGAGGAGGCAAGGGAAATG
ATATATGCGGCTAGGGGCCCTGTTGAATGAGCAGGGACATTGACGCGACCTCTCATCGGA
GCCTGCGGCGTAGCGGGAGATGTCGTCAACAACAACTTTAGTGGTGTGGGAGGTGGCGAT
TGGTGAAGAAAACTTCTCCTAGTTTTTTTTAATTGAAAATTAGGGGACCTGGAGGGGTTT
TTTTATGTCGAAAATGTTATGTAAACTAATTGTGATGGGTTGGAGGGTTACCCCTACTAT
TAAATGAGAGTTTGTAAGTTCGCCTCACCTACTCCTATTTTTCCTTCCAACACCCCTTTT
TTATTTTCTGTTAAATTATTTGATAATCTCGATTGATGTCATACAAAATAAAAACCAACA
TAAATAGGAGTAAATTGGAATAATCGAAACCAAAATGTACTTTCACAAGCCATCCTTGTT
GCATTAACTCAATCAAATCAAACCTTATCAAAATCTCAACTGAACGGAATTTTTGTTGCC
TTCTCTAGCCATATTCCGTGGGTTTGTTGGATACAACTAGGGAGGAGCCGTAATAGATAA
CTCAATACTTAACATCCTCATACACCTGAAAAATTGATGGTAATGGGATGGCCAACCCCC
ACGACAAAGATCATAAAAAATAACTACCTACACAAGATTAAAAATATAGATGTTGGACAA
ATACACCGGTCTAAAAGAAGGGCAGATTCTAGTGGCAATTTGTTTGACATGTAAGAAATA
AATAACCAAATAAATAGATGAGCAGTCATTTAAGCACACTTATTCATGCCTTGCATGCTT
TGGTTCTTATAAGAAACAATCATGATAGCTGATAATGAAAGAATTTCTAGTTTGACTGAA
ACACATGGTTGTTTCCTCATAACTCTCAACGAATATTTTGTTGTGTGCTATGTAGTTGTT
TGATATGAGCAAACTAAGTTTGATTAAAGAAAATAAACATCTATATACTTATTTAGAAGC
CTAAAAGTAATACGAGATATTCAATATGTGCATGGATAGTGGACAATATCAACAACACAT
AACTTTTCTAACTAATGCAATTTGTTTGTAAATCAGAACTTGAAATATGTTGAAGAGAGA
GAAAAGGGCTAATGCATGATGGAAGAATAGAACTATATACAATATTTTCTATAAGTGCCC
GACCATGAACAAGCGCAACCTCTCTAAATCTTCTTCAGATGGTTACACAACCATATCAAT
GAAAGCTTCAACAACACAACTTATTGATAGATGTGGTAATTCATCGGAAATGTAATTCGG
CTCCCGGGAGCACGTGCTCCTGCCTGTGAAAATGATTTTTGAAATGTCAAAAAAAACCAA
ATGAAACACCAAATATTACCCCGAAATGTCATTTCAAATTTGTTTTTTTCACCGACAAAA
CTTTACTGCTTCGTTTTGCACGAAAATTGTCAGGCATGCTTATGACACTAACAAGAACAC
CCATAAAACAATTCAGAATTTTTGAAAACATTTTGGTACATTTTTTTGCTTCATATGTAG
TAAGCAGTGAAATCTTTTAAAAGACTTATATTTAGTAACGGAGAGAGTACATATGCATGG
TAAGACTAAAACTTGGGCCACAAAATATTTGACATATACCTGTCTAGAACTGGAATGGAA
GTAAGTATGCATATAGTGATAGATGAGGCCACCACAATTTCTACACTTCAAATATCCATA
AAAATACAACGAAATGATATATAGTACAAAAAGTAGTAGATAGTAATGACATAGTGGAGA
GTGTAGTATTCAACATTTTCTATGAGGGATGCAAAACAAAACATAGGTTGTGTTCACAAG
GGTGAACATGTTTGCATCATAGACATTACTGTACAACTGGTCGAAACATAAGTACCCAAA
TTACACCCCTGAGGCCCAAAATCACTTGCCCAATACTATGAACGATTAAAGCAACCAATG
GTTGAAAAAGCGATAAGGAAGACCACATCTTTGTTCGAATGCCTGAATCTAGGCCATCGA
AATGGAGAGCCAAGGATTGTCTATGGAGACACCCTACTTGGATTATTTTTGAAACTTTAA
GTCACTTTTTATGCTAATCTCTCATAAGCACTCTCTCTTGACATGAAGCTAAGACACCTA
TATATGGGAAAAGAAGAAACGGGTCTCAAAGACAACTTGACACCATTGTTAACATGCCTT
ATAGTGTATGCTTCCTACACATATATATATATATTTAAAGAAAGTGACCTCCCTTCTGGC
CCATTTTTATAGATGAATCAACAAAAGAGAAACAAAAAACTTAACAACCAACGCCAACGC
AAATTGCCCAGACAACCAAACGGATGTCTGTTCTCAGTAGCGGTTCTAGAATTAACCCAC
GTCTCAGACAGGCTGCACAATTACAATGTAATAAAGTGTGCTACAAAATACATTTTGCTA
TAGTCAACAAAGCAAATCATCATCACGTCCTAGGCCGAGGCGCTGCCTGCCTGGGCCTGG
ATCCGCCTATGTCTGTTCTTACACAAATATGTTGTACATATCCTTAATATAACAGTATTA
CTATATATATATGATATCTAAGAAAGTAAATCATCCTTATGTACGCACATACGCACGTAC
AAAAATCCTACCTGTATGAGCATCTCCGAGAGACTGAAACGATATATCACTTATAGATTG
ACAAAGTTGTCACAAACACCTTCATAGTTGACATGAACATCTCCTTCCATCGAACACACG
TCGTCGAAAGGTCTGAAATAAATTTTAAAAAATATCGAACACCGGGTTCTCAAATCTAAA
ACTTAGACTCTTGTGGACAATAGATGTCCTACTAAAGATTGGTTCGCAATAGGTCGAATA
ATGCCAAGTCACATAATTAAGCACGACGGGTCGTGGTTTTGTTTCGAAAGAAAATTAAAC
CATGTTTCTTCATCAATCTAAAAAAACCGTGGTGTTATTTTTTCTTCCGTAATTTACTCT
CGCCGGAGCACGCAATATCTTCTGCGCGGGTCCACGTGCAGAGCCCGGGCGAGCCACCAC
CGCACGTCCAGCGGCTCGCGATAGCGACAGTAGATGCGTCAGCGCATTCCTTTTTAGCTG
GAAAGTATGGCTTTGGCACATACACATTCCAACCCGTACAAAAATAAGCGGCATTTCCTA
TTTTTAAGACCTCTCTTCCTTCCCTTGCGCACCAACAGCCCCTCCTCCGACGGCGGCGAA
GCCGGCGAATCGGCGTCCTCCCCCCCTCCACGACGCGCGCGCAATCCGAGGTGAGCTCCT
CGTCAGGTTCTGCGTTCGCCTCGCCATTTGTAGCCCGCTGGGTCTGCTCTCCGGTCCGCC
CCAAAGTAAGCAAATCTTGTAGTTTGATGGGTCGGCCGACGGGGATGTTCGGAGATAATG
TTTGGCAGATGAATCTGACCCGGTAGCTCGGTCGATTTCTGGGCCAAGAACGGAACCATC
CGAAACCCCGCTTGTGCGGATCCGTTGAGTTTCCAGGATTGTTCTCTGGAATCCGCCGGA
ATCTGTCTGCCGGAGACTGAATTTCGGATGCTTCTCGTGTTCAGTCTTCAAGGCGGGTGT
TCTTTTTCCGAGTACGTAATTTTTTGGTTGGGCTGCAAGCTGGTGGTCGATCCCACCAGA
TAAGAAACCTATCCCAACGGAGAGGGCGGGGCGGATTCAGTGAGGTGGGCAGGCAAATTC
CGACGTTTTGGTGCCACGATAAAGTTTCGGGAAGGTTGATTCATGAAGTTTTACTGAATA
AGGCGGACATTCAGGGTCAATATTTTCGATAAAAGAAAGATTAGAAATGTGCTCTGTTAT
CAGTTTAAGCAGGAACGGAAATGTAGTAGGAGACTTGGACGAACCTGTGGTTTCTAGGTG
GTTTACAGAACAACTAGTGGTTACACGAAACATGCATATGATATTTTCCTAAATGCTACG
GCATGTATGGGTTCTGATTTCTGAACATATGAATGTGATTCTGGTCTCAACACTGACTCG
CAAATTCTGAACTGGTCCTAGTTTTGCGCTGTCTTCACAGACCGCCTTCAAGAGGATAAG
ATGTTGTGGCGCACGATCCGCAGTATGGAGGTCATGGCACACTCTTCTAACTTCCTTCTT
CCGAAACTGCATCAGCCTGCCAAGACTCCAGCAAACAACTATACTCTGGTTGTTCTCAAC
CAGCAGCTTCCACGGTTCATGCCTCGCCTCTGGGCTCAAGGTACCTAGCTCTAGATTCTT
TCTTCTCTGTATATTCTGCTCATGGCATGTATCTTTAAAATTCTTTCTTCAAATTTAATT
TAGAGCAGCAAAGATGAGAATATGTGCTGATGGTGGAGCCAATCGTGTTTTTGACGAGAT
GTCTCAAATGAAAAATGACCTGGACAGAAATAGGTTAGCTGCTTTCTTTCCTCCTTTTAT
ATCAAAGGCTCAACTAATGTGAAACATTTTCATGCAATTCCAGTCATGGTTCGAATTAGT
TGGTTATAGATGTGAGTCACAAATGCTAAGGAGTTGAATGACTGCCAAAACCTACAGTAG
CTGCATTTCTATATATTTTATTTTTCAAATTCTCACTTGAAATGAGAGGTACATGGTACT
TTCAAGCTGGAGGTAGAGTTTGTCCAAATAGATCTGTAGCAGCCTGTTGTTGTTCTTTGG
GTTTGGATTGCGAGTGAGGGAGGGCCGGGCCGGCAAAATCCAGGGCCCTGTGCGAAACTA
AAAGATGGGGCCCTACCTAAAAAAATGAAATAACGAGCTATTATAATGTATATATATCCC
GCAGAAAAAATTATAATGTATATAATATAATGTGTTACATAACAATTAGACATAAAAAAA
TTATAACGTATATAATATAGTGTCTTACATAACAATGGAAGATCACGCGTCAATGTTTGG
CAATTAGACGAACCATCTAACTCGCCTTGTTTTGGGTCCTGTCCGATAGAATCGCTACAC
TATGATATTTAATTGAGGAGGTAAGAATCAATCTCTAACGAAATAATTATCCCTGTTAAT
AGTTAATTAAAAATTAAAAATTCAGAGTAGAAACCGAAGTTAATCAAACAGAAGGACTTG
ATAAGCACCTGGACGAGGGACGAGGCGAGGAGCAGGCCGAGGACGCCAAGGCCGGCTGCT
TGCCGAGATGAGGGCGCGGGCGACGTGAGGGACGATTCTTCGGTTTGTGTAGCCACGATC
GATTGACGATACAAGAGTTCCAGTCGCCCGTTCCCTATCTGTAGTTTTTTTTAAGGAATC
CCGACCTGACTCCTTGTAGCGATAGATGAGGAGTGCGCTCGCTGCTCGGTCGATGGTCTC
CAGCCCAACTCCAATGCCACAAGGCCCAATAACGCTTGGTTTTCTTCCTTTTAATACAAG
GCTGATATAAAATTTTTGGGGTCCTACAGAATTTTGGGCCCTGTGCGGGCAGCAATTCTG
GCACCACTATGGGCCCGGCCCTGGAGTGAGGCACCATCTCCTCTCTAGTGATCTGTACAG
TGTTAATAAGGTTGCCATAACATAAGCTGTGCGCGCGCCCAATGGCAACCTCTGGTGGCT
CACCACGGTCTACGGGCCCCAAAGCGACCCGGACAAACTGCTGTTCCTTCAAGAGCTGCG
TGACATTCGCGATACCAGCCCAGGCCCATGGATGTTGTGTGGGGACTTCAACTTGATATG
TCGTGCCTCGGACAAAAGCTCGGGTAACGTGAACCACCGCATGATGGG
