| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1561275
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11518 |
3 |
2103 bp |
None |
Available |
Available |
LOC_Os07g48000.1, FRAME:-3, EVALUE:6e-55, 13107.m05128 protein retrotransposon protein, putative, unclassified, expressed |
| MLOC_11517 |
4 |
2071 bp |
MLOC_11517.4 |
Available |
Available |
LOC_Os10g42880.1, FRAME:+1, EVALUE:1e-47, 13110.m04052 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_11518
CDS Structure of MLOC_11517
Contig Sequence (7330 bp)
>contig_1561275 7330 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGTAGAAGTCCTTACAGCTGAGTTGGTTAAGTAGACGCATCCT
AAATTCAGGGGTTTAAATAGATGTTCTCCAATTCTAATGGTAGCTGTTTGAGCATTTCAG
GCTGGGTTGACACCAGCAGAGAAAACGTCTGAACCAGAAGAAGCAAGGCGATTGCAGGTA
TTGTACATCAATTCAGTAATTTGTCAAACTGAGTAAAGACGAATATTCAGTATGATTACT
AATTTAATTCGGAGTTATACTTGTGATTCTCATATCTTATGTTTGTTTTAACTAGATGAC
TGACGCACGATGTGAAAGGTGCACAGAAAAAAGAGTAGGCATTTCTGATATTATTCATGC
TGGTCATGGAGATCGATACCAGGTATTTAGTTTTTCATTTTCATTTCTTTTTTTCATTTG
GCTATCAATATGGATTCACACTCTATTTTTCTGGATGCCACATTGGGTCTTTCCATTTTG
ATTGTACAATGTACAGGTATTCCGTTTTTTAAATAACATTATTCCATAAATGGATAAATC
GTAGTGGTAATTTTGGCATTGCCGGGAATGTTTTCAACTGTGAAAGGTTCAAACCTGCCT
CTGAACACTTGTTTGGTCGGTGCCTTTGCGGGCTTCCAGATCTATTCTTTTCCTTGCACA
TGCTTCCAGATCTCTTCAGAAGTGCTGGATTGTGCAAACATTCTCCTATTTACTGCCATG
GTTCACTGATTTGTTCGAGGCTCTTGTTCCAAGCATTATAGTTTATATATCATACCAATA
ATCAGTAGTGACTTATCAACACAAGAAATACGTCAGTCAGTGACTTTGAGTCCATTCTCG
TTAATTTCTACAATGCAGGAACAGGGAAAACATAGGAATAGAGTGTCATGCCGTCTTGAA
TTCTACAGGATTGCATGAACATTTGATTGTGCACAGGAAAACACAGGATTTTTCACAAGA
GGTTTAAGAGGATCCAGGAAAAGAAAGAGTTTTGAGTGGACGGAAACTTTCCTTTGAAAT
CTTGTGCGAATGAATCCCATGGATTGCAATCCTACGAATCAAACAAGTAGGAAAAATACC
TATGGATTTGAATCGTCCGAAATTCCTTTGGAAATCCTTTTAATCATAATCAAAGAGTCC
ATCAATCTCTTCTTGTTACAATTTCTTTGTATTTCCAATGGTGTCAAACACTCTTCGATG
CAAATTCCTGGTTCTCCAATCCTAGATGGAGGAGGACAAGATACTCCAATCCTGCAATTT
TTCCTATTCATGTGTTTTGAAAATCCTGCAAATTAGAGAAGCCACGTTGTTGCCTTTGTC
GCTCCTACCATCATGGACTGCAACGAGACATGCCATAAATGGAGAGGGCAGGCAAAGGAT
GCAATGACGGCTCGGGCTAAGAGAATGATTAGGTTGCCGTACTGCTTTTGTTAGCTACAT
GATGGGGAATCGGAGGTAGGCTATGGGATCATTACGAATTCACCAGGTAGGGTGTCTGTC
TTGCTTACAAGGAAGGATTACAAGCCAACGACTGCTAGCTGTTTACCAATTTGTCACCTA
ATACAGAATACAACGAAGGTATTTATAATCCTCAGGTTAGGACACAATCCCCCGATGTCT
GATGGGCTATCTTGCTGGGCCGGCCCTCCTTGGTGATGAAGGTTGCACTGGTGGCATCTG
TAGTCGATGTATGCACAGTGCTAACACTCCCCCCTTTCTTGATGAACATCTTGTTCCCTA
GCTGGTGCTCGTGGAAAGCGTTGCTTTAGCTCTTCCAAATTCTCCCATGTTGCTAAGGAA
TCCGGTTGATCCAACCATTGGACTAGTCCTTGAGGTACGGCTTCATCACTACGGTGACAC
AAGTGACATTGAAGCACCCTTACTGGTACTGCAAACTGAGCATCATGAGGAGGAAGTTCA
GGTTGAACTTGACAGTGTGGTCCAAGAGCAAGTTTCAGTTGGGAAACATGAAGTACTGGA
TGAATTTTGCTAGCTGCAGGAAGCGCCAGCTGATATGCCGAAGCACCCACTTGTTCCAGG
ACTGTGTAGGGGCCATAGTATTTGAACAGCAACTTACGATGCACACGAGGAGCGCCAGAG
GATTGGATGTATGGTTGCAATTTCAGGAAAACTGAATCACCCATGGCAAAAACCTGCCAG
AATGCTTCTTGTCGGCTTGATGCTTCATGCGAGTTCGAACCCTTCCCAAATGTTGCTGGA
GTAAATGAAGCATGAGATCACAGTCACGGAGCCAAGTATTAAGATCAGGCACAGAACATG
TATCTTCTGCAGACAATCCAAAAGTTCTGGGCGACTGGCCATACAATACTTCAAACGGTG
ATTTCCATTGAAGCGCGGAATGAGGGTTGGTTTTATACCAAAACTAAGCAAGAGACAGCC
ATTGAGCCATAACTGGACATGCATGGGTAGAACAACGTAAATAGGCCTCCAGGCATTGAG
TGACTTGCTCGGACTGGCCATCAGTTTGGGGATGGTGAGAAGAACTCATGTGTAGCTTGG
TCCCCGTGAGTGCTGCCATTTCCTTCCAAAACTGGCTGGTAAAGATACAGTCCCGATCTA
TCACAATTGACTCAGTTAAGTGGGCCACAACCAGAACTTGAAACGTCCAGAGCGAGGCAA
CCCTTCTCCAAAATCCATCGTGAGCATTTGCCGAAGCTTGTGGGGATCAGGCAAAGGCTC
CAAAAGTTCTGGATAGTGAGCTCGATCAGGTTTGGTTCGCTGACAAACCATACATTCATG
AACATACTTTTTCACCCGAGCCCCTACTCCAGTATCATATGTGTCTGTTTCAATAACAAA
CTGTTGGCCGAAATCTGGCAAGGACAAAACAGGTGCAGTAGTGAGAGCCAAATTCAGTTG
CTCAAAACCAGACCGTGCCTCCGGAGACCAAAAAAAAGGAACATGTTTCCGGAGAAGGTT
TGTTAATGGTTGCTTAATCATTCCATAGTATCTAACAAACTTACGGTGGTAGTAGTCTGA
CAAACCCAAGAAATCCACGGAGTTCTTTCAGATTGTTAGATACAGGCCAACTATTCACAT
CTGCAGATCTGCTATCTTACTTGGATCGTTGGAAACACCTGTCTAAGAAACTACATATCC
CAAATAAGGGATACTGACTTGAGTGAAATCACACCTGGATCCTTTGACCTTCTACTGGTG
TGGCTGTAATAATTGTAACACTTGCTGCACATGGTGAAGATGATCCTCGAAAGTGGCACT
GTATACTAGGATATCATCGAGGAAAACAGTAGCACACTTGCGAAGTACTGGTGAAAGTGT
CATTCATGACTGACTGGAATGTTCCCAGTCCTCCTGTCAACCCAAACGCCATGACATTAA
ACTGGTCATGGCCGTTGTGTGTGTGAAAAGCCGTTTTGGACTCTTTACCGTCATGCAAAT
CAAGTTTTGGAAAACCAAGATGATCCTGTTAACTCATCAAACAGCTCATCAATTACTGGT
AGAGAAAACTTGGCCTTGAGTGTAAGTAACTTTAAATGCCTGTAGTCAACAGTCAACACA
CAACCTCCATGATCCATCCTTTTTCCTAACCATAATGATGGGTGAAGCAGGACTTGAACT
GGGTACAATAACTCCTGACTGGCTAATTGTAACATCTCATGCACTTGTTTTTCAATTTCA
GTTTCTAGCTTTGGTGAGTACCTATAAGGCCTGATGTTGACAGGACGAGCTCCCTCCATG
AATGGTATATGATGATCACAACTTCTTCAAGGTGGAAGTGCTGTTGGTGTCTCAAAGACC
TCAGCAAATTGATTTAAAAGCTGCTGAGATTGTGCCGGAAGAGCTACATAGCAGATACAT
CGAAATCGTACAGCTGAATGTTTCAGGAGGATGGCCTTGGAGGAAAACAGGACTGCCCTT
ATGATGATGCCAGCCATTTCCTACTAGAAACATTTTTGGGAGATGGTTAAAGAGATGGTT
AAAAGAATGCTTGATAGCCTGCATGCTGAGGAGTTGCAACTTAGAAGACTTAATTATGGG
GTGATTACTTTGATTCCTAAAACAGAAGATGCAACTTTCAAGCAATATCGGCCAATATGT
TTATATTATGTTTGTTATAAAATTGTCACTAAAGTACTGACAAATAGGCTTGAGAGAGTT
GCAGATAGAGCCAATTAACTTGCATAGCACCCAAAGATGACAGCCAGTCCATGCCCACAA
TACCATCACAATGCTGAAGTAGCAGTACTTTGAAATCACACTTGAACTCATGCTCCTGAG
TTGTCCTTTGGCAGTCAGGAATCACATGTGTACAGCATAAACAGCCTCCACCAGCAATCC
TGACATTCTGTTGATTGGGCCATTATATGAACAGCTAATCGAGTACTGACATATGAATGA
TAACTACAGTCAAGCAATAATACCACTTATTGTCCAGCAATCTGACAGTCTAACCGAATA
TCACTAGCTCCCCCTGTAGCAGATTGAGTGTTAGCTGAAAGTACCATAAGATCGATATCA
CTTTCATCAGAGTCCATGTTTTCCAAAGCACATAATTCCAACATTTCCTGCACCACATGC
AACTGGACAGTGGTGTTGCATTGTGATCCCTTCCCCAGCGTTCACCACAAATAAAGCAGA
GACCCTTTGCCCTGCGATGAGCTTTCAATGTGGTCAGTTTGTTTTCTGCAGAATTGCCCT
TAGCATTGTCTGTAGGCTTGTGCTCTTCATAAGTTTTAGAAATAGTTTGACTTGCCTTGA
TGATAATAGGAAGAAGCAGAAACAGAGCGACCCCCTGATGTATAAGAATCACCATCGAAT
TCCCCCATCTCCTCCTGCACATCAGCAATAGTGTGCAGTATCCAAGTCCACAAGTCTTTG
GACAGCAACAATCATATGAACATTGAATTTAAACCATTTACAAATCTAGTAGTATAGTGC
AACATATCTAGATCAGGTTCATAAGCTGTCAACTGATCCATAAGTTCAAAAAACTGACTG
ATATATTCCTCAACAGGACCAGTTTGTCGAAGATAATGCAATCTATGCACTAAGGAATCA
TGTTGATTGCACCCAAATCGGCGTTTAGCCGTTGCAAAGAAATCATCCCACGAGGCTCGC
ACACAGCATGCAACTGCTCCCTCGAATCGCATTGCAGCCACCGCGATCATAGATCAGGGT
TGGTATCAAACATCTCAAAATAATCAATGCATGTGGTTTGCCACAACTTAGGATTCTTGC
CATCTAATTGCGGAAAATCCACTGACGGTGGTTTCTAGTGGCCTGACGGCGAGGACGAAC
CACTCCTCGCGTTGCAGAAGACTAGAGAAGGACAAACTCGGGCATGGTAAATACACGAAT
AGCTCTCGCTGGAGGAGGGATGTAAGGCGTTGTCGTGCCCAATCCCGTCCCTGTGTTGTC
GTGGATGAGTGGTGCCATCTAGGCTGATCTTCGCGCCTCCTCTTGGTGTCCTGTCAAACA
TATCTGATTCGCCGATGCGGGAGGTGAGACCCTTGACGACCCGAAGCTCCCGGATCTGCT
TGAGGAGGTCTGCTTCTGTGCCATCAGTGTAAGTTTGCATATCGTTGACGATGGTGCCGA
CTACTGCAACAACTGCCTTGCCGACTGCCACACCAACAGAACACACCACCGCCGCATCGA
CTGCGCTCTCCAGAGCCGCCATGATGAGCGCGTCGAGCTCCTTTTGGTGACGAAGGTGGG
CCGCTTTGCTCACCTAACTGAGCGTCTTATAGATCGCCCGGAGTCGAGTACTCCATGAGC
TCTTGCCGGAGGTGCGCTACGCCAGACGCGTGTCGTGGGGATGATACATCGTGAGGTGGG
TGAAATTTTTAGCTCTGAGTACCAATTGTTAGTTACAGGATGGCGAATCGAAAGTAGGCT
ATGCAATCATTTCGAATTCACCAGGTGGGCTGTCTGTGTTGCTTACAAGGAAGGGAACAA
GGAATGGATTACAAGCCAACTGTTAGTGCCACTATTGACAAGGCAATAGACCCTACGGTG
GACCATGGGTTCGAGCCCAAACGCGCCTCCAATAGGCCGCTTCGGATCGCGCAGCCCAAC
AGGATACATCGGGCCCGGTGGGCCGACTAGGGCTTGTCACGCCTAGATCGCCAGCTACTT
GTACTCACGTGCGCGTCGTGTCTGGCATCCAGTTGGATCAGAACGAACGGTGGCTCTCTT
CCCCTCTCCTACCTTCCTCCCTCCTACCACGAGATCCGCGAGACTATCTTAGTGAGACTT
CGAGTTGTAATCGAGATTGATACTTGTATCCTGTCTCAAGCTATAGATTGATTGACACCT
AACATCCTGGTATCAGAGCCAGGTTTCGATCCTGGGACATGTGGGTTATGGGCCCACTCA
CCCCCATCACCCCCTATCATCTCTAGTTCTCGCTTCCTTGGCCAACCACCCCCATCCATG
AATTTCCCTGTGTTCACGGGCGAAAATCCGCAACTCTGGAAGGCGCTCTGCGAGCAGTAC
TTCCAGATGTTCATGGTCCACGATACCTACCGAGTTCCCATGGCCATCCTCAATTTCTCG
GGCCCTGCAGTCATTTGGCTGCAGTCGGTTCAGAAGAAATTGATAGGGTTGGATTGTGAG
CCGTTTACTTCCCTCCTCTGCACCCGCTTCGGCCGTGATAAACACCAAATGCTCATCCGT
CAGTTTTATGCCATCAAACATAACACCACAGTCGTTGATTTCATCGAGCGTTTCGAGTCC
TTAATGAATCATTTGATATCTTACTCTAAAGCAACTCACCTTAACTCGTTTTGTCGAGGG
GTTGCGGTCGGACATCCACGCGGTGGTGCTTGTACAACGACCACCGGACCTGGATACAGC
TTGCTCGCTGGCACTACTTCAGGAGGAAGTAGCCGACGGCGAACTCCCCTACGGGCACTC
CACCAATCGCAACCCGACCTCGTTCGCTCGTGCGGCCACGCCATGCTTCTTCAGCAGACC
AGCCACGCCAACAACAGTCTCTGAAGATCGACGAGGTACCGATGCTGCACGCGCCCCGTT
TGGAGCCAGCAAAGTCGCGGCTCTCCGACAGTTCCGCTGAGCGAAGGGCCTTTGCTTCAA
GTGTGAAGAACGGTGGGGGAAGGACCACGTGTGCCTGCCCACGCTGCAGATGCACGTCGT
CGATGAGCTCCTCGCCATGTTCGCCCAGGACGATGCTCATACCGAGTCTCGGCGCGCCTC
GCCAGAATCAGAAGAAGAAAATCTTAAGAGTCGATTTTCACCTCTGGGTACCTTGGCGAG
AAGGCGACGCTGGCGATCCCAGATGCGTAGGACCCCATGCTCAATCAGCACGCGTGAGCC
GTTCTCATCC
