Contig Data
morexGenes
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Map Locations of contig_1561244 (6066 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1561244

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11500 3 1509 bp MLOC_11500.1 Available Available LOC_Os04g22870.1, FRAME:-1, EVALUE:8e-60, 13104.m02123 protein rpp14 family protein, expressed
MLOC_11499 1 513 bp None Available Available None
MLOC_11498 1 737 bp AK371226 Available Available None





CDS Structure of MLOC_11500






CDS Structure of MLOC_11499






CDS Structure of MLOC_11498






Contig Sequence (6066 bp)

>contig_1561244 6066 assembly3_WGSMorex_rbca.fasta
GGTGGTCCTGCGGCTGAAGCGGCGGGCGAAGAAGAAGGTGTCCTGGAAGGAGGGGACCGT
CGACAACGAGTCCCTTGGCCGCAAGAGCTCCAAAAAGTGCTGCATCTTCCACAAGGAGGT
GCCCTTCGACGAGGACTGCAGCGACGACGAGGCTGACGGCGGCCGCGGCAATCCGCCGGG
GGACGGCGGCGAGGGGACCAGCGGCGGCAAGGGCGGCTGCTCTTCCTCCTCCCACGGCCA
TGACCACGGCCACGGACACCACCACTGAGCTCTCGTTCGATAGGTATGATTTGGGGGTCC
TTGATGCTTGTTTGTCCATTTGTTGTGGTAGATTTTGAGATTAGATGGTTGGGAGTTCCC
AATCTATGACCAGTCTCGGGGGAATACTGTTGCAGGGTAGTAGTATAATCAGCTGGCGAA
TTGTAGGATCAGATAGGACATTCATTAATAGGAAATGAAAATTCTAAGGCTCCTCTTTAT
ATTGTGTCTAATTTCCTGAAGTATTTATTCGATCAGAGGTTTTGTATAGTTGTAAGAATC
ATCACTGTCCATAATAGAAAGCTAAAGCACACTGCTCTGGTGTGTACTAATATAGAGTAT
GCCTAGCTTCCATGATCATAATCTTGTAAACTGATTGTTGTGTCTGGTGTTATCTGCAGG
CAACTTCTGATGGGCCTCCTTGCCTACCCTTGATGTTGTGAAGGGAAACATTGCTTCTGT
GTCTCAAAAACATTAGGAGAAAAACTAGTTTTACCATATCCTCAAACTTGCAAGAGGATG
CACCTTCTATATAAAACTGTACTATTGCTTACATACAATCCAATGTTATAAGATGTATAA
ATGCAACACCTGTTATCACTGTCGTGATTCGGTGAGTTTAAAAATTGTCAGGATGTTCTT
GGATATTCTTTTTGGCACCTCATTATCCTTGTGGCTGGAATAGCAACGTATTGTGTGTTT
ATAGACTATAATAAAGTGATGGTTGCTTGTCTTATCAGATGCTTTATTGGCCTGTCTCAG
TTGTAACATGCCCTGATAATCAGGATACATGTAACATTCATGACCTTTCTGTTGAATGTT
CCTGTCACCCAAAATCAATGTATGGGATCCGAGTAAATTCTTCGAATGTGAAGTTGCTTG
TCAATTTTGTCATATGAATTGTGAAGTTGAATTTGCAGCCTAAAATTTGACTTGTTTACA
GGAAGCTGATGGTATTTATGGTAAACATGGATTTATGTTGGAGTTGGTTAAAAGGATGTG
CCAGATTGTTGCTTGAGTTTTTCTTGTGCCTATTAGCCGTTGTGAAACTGCTCCGATTCA
TGGTTTTGCTCTTATCTGGTACAACCTGAACTGCAAAAACGTCTTATATTTTGATACAGA
TGGAGTATTAATTTGAAGGGACTGAATTGATCAGGTAAGATAATTGGTAGGTACGCATTG
TTGTGGCTTGTGGATCTGAACACACCAACCAAATTTTGTTTCCTTCCATTCCCTCCTGCA
CAATTCGTTTTGTATTTTATCAGGGGTGATGTGCCAATGTATATCCCCAGTCCCTTTGAA
GCTAGGTGGCAGAGAGCATTAAGAAATGAAAATAGTTTGCACTGCAGCAAACGACGCGTG
TTGTGCCGCATAGGCTAGCTGGTTAACCTGTGGGATTTATGTTCGCCACTTCATCAGGTT
CCATCTGTTCCGCTTTTGCAAAATACTGTTTCTAGTTTGACACATGACTGGCGCGTTAAA
ATTTGCTGTCTGGATTGATTCGCTTCTCATGCCCCATGTTTATTAACCTAGCAAAATTTT
ATTCTCGCTTTGCTTCTTTGGAGGATATTGTACTACTCAATTTCTCTTTTTCATCAGTGG
AACTATTATGGAGCATATGCTCTGATTCCAAAGCGTGAGCATCAGACTAAGAACACATGA
AAACGCTTGATAAAGTGTAGTACCATCAGCTTAAAAAAAAAGGAAAACGTTGGCTAAACT
GCATCATTCTTTTGCGCCATACCAGATGCTGGCTTGATCATGATTAGCTACACACCATTT
CTTCCACAAGAACATCCTTTTTCCTAAGCTCCCTCTTTAATAGGTCTTTTTTGGGGATGG
ATGCCGCCGTGTTGCACCCTTGGACCGAGCAACGACAATGCCGTTTGTCTAGATTATAGG
TTCTTTTTCAGACTGCTGGCATGGGGCAAACTTTAATTTACTAACTGTCTAATCCTTTAA
GTTTGCCAAAGCAACCCTGAACGGATTCGATAATCTCCTGCGTCATGCGGTCACCAGCAG
CCAGCTTGTACTGCTCAAACTTCGCTTCTTCGCACTCCAGCGCGGCTTTCTTGCAGGCCC
TGATACTTCCTGGATAGGTAGGAGATTGATGGTCAGCTCTGAACTGCCACAATTGGCCTT
GCAAAACATTCCTTTCTCTTCGGGATCACAACAAAATAGTAACAAGTACACCAAACGATA
TGAGGATGAGCATAAAAACTATACATGGAGTAGCATCAACAGGCCAAAGTTTGTGCAGAG
ACAAAACACTCAGAACCTAAGTCTGGGCTCTATACATAGAAAAACATACATCATCAGGCC
AAAGCTTGTGCAGGGAATACATCAAAACCAAGTCTCCAGGTCTGAGTGAGATAAGTAGTT
TCAACAAACTCAACAAATACATGCATGCACAAAAAATAGAAGGGAGGTCATGCGGTTGCT
AACTGAACTTCAACTTACACTCAAAAGTACTAAGATGCAGGTTGTTAAATAGACTCATGG
TGCAGCAAATTGATTATTAGAAAGAAAAGAACAAAGATTGATGTGGTTTTACCATCAATT
ATCCACTCACCACTCACGTCCAAGAGGTTGAACGACACTGGGATCTTCCCAATGCTCCTG
ACCATTGTGATAGCAGCCCACACTTTCTGGTGATCTTCACGCGACATTCGGATTACGCAA
AGCTTCGTCACAGGATTTACATACTTCACTGCAGAAAATAACCAGAGCTCAGAACTACTT
CTACAAGTCTAAACAGAACTGGAAAACAGACTGCAAACACTATTAGCACCTTGCAATGAT
CCAAGAGATGCAGCTAGACCACATTCCCCAAAGTTGAGCTGGATGCTATCTCTGATCACT
TTGGTTATGTTGAACTGGGTGAGGATGACAGGATCAGCCTCTCCTCTGCTAGCGTCGATG
AAGACCTCCATCACCATGTACCTGTTCTTGAAATGAACCATTGTGTAAAACCACTGGTGC
TCCTGCTTACCGTGACCTGGATTTTCATGAAGATGAACGATGATCAAAATTCAAACAAAG
GCACCTCTTTAAGAGAAATAATGCAGTAAGGAGCACAGCCAGGCCATTAAAAGATTTATC
TTCGCCACTATACCATCAAAAATACACACCGCTAAAGTTTAACGTTTGGGTATTTTAGTT
TCAAAAAAATTCAAAGTACTACCCTTGTTCTTCTGTTTTGCAAACGTATAATTTACATTT
GGCAATAGACGTAGAAACAACACCATCCACAATTTCATGTGTTCAAGAAGATTATAAATC
CATCTAATAGACTAGTAAACAAATACAGTCAAGGCTAATGAGTAATGACTACTTACGATT
CCAAATAAAAAATCCCTTTGATCTGATAGATAAGTCCATCAGCCCTGACTGCTAAGTGCT
AACTTGCTGCTATGAATCAATGTGCTATTATAATGGATCATGTTCCGTTCTCATAATCAG
ATTCTCAGACGGCGGAAACTTAACAAAACAATAGCTAGCAGATTCATGGAGCCAGGATTC
GAGCAAGTCTCAGGTCAAAAATCAAGCAGTTAGAATGATCCCAAAGAGTAGTACCCCATG
GCAAAGCATAAACAGATCAAAGGAATATGGCTGCATGACACAAATTTGAACTCTCAACAC
TTGTTGACCCCGCAAAGTAGATTAAACATGACCAAAACAATATATTATAGAGCAAGGATA
CAAAAATAGTACTACCTCCGTTTCAAAATAAGTGTCTTAAGCTTAGTAAAACTTTGTATT
TGTTTGATATGAGCCTTTACAAGACCTACAGAAAGAACCTACACCTTGAATAAATTGTAC
TTGTATATTTACATAACATGAATTAATAAGAACATATATCAATGCAAGCACTTAAGAAAG
GAAAAATGATAAATCAGGGGAAATTCACCTAGATAGGCTGGACTAGTGCTGTGATGTTCT
CAAAAAAAGACTAGTGCTGTGATAGTTAGAAAGAAAAAAACGACCAGGCTAGTGCTTGAT
GGGATTGGGGTTGGGTCTTGGGGAAATCACATGTTGACGGCAAGCTCGCAGAATCGCGTG
TAGCGTAGCGGAGGGCCGGGGTCGAGAGGGGACGGCGCTCAGGGCGGAGGCGCAGCAGTC
TAATAGAGGTGAAGGAGCACCGGAACGTAGGCAGTCTAGCAGGGAGCGGCGGCGCAGCAG
TCTAGCAGAGGAGGGGCAGCGCGCAAAGGCAGCCAGGCGCCGCCCGGTTCGGTCGATGGC
CACAGCCCACAGGCCGCAGGGCACACGTGTCTGGTCTCCTCTCTGGGCCGTGAGAAAGAA
TAGGTAAAATAGACTTCCTCTCTCTCAAAAAAATGTAAACGTATATTGTCGTAAAGAGAA
AGTAAACGTATGTTCACTGGTCACAGATCAGATTTCGATGTACCACTTGTTCACATCCAA
CCTTCCGTTTCTATTCAATGCCAGTTTTTTTAAGAAAAAACTTTTGATATATTCATTAAC
TTTTTTTTTGTAAGTACGTCAAGGGGTACCATATATTTTTATAAAAAGACATAAGTTAAA
TTATAAGACACTATAAATTACTGCGAACAACAAGTATAGCAAGATTTCACATCTGAGCTA
AACAACAGATTAGCCATCATAACAATTACAAGCACAACGCAAAGAGTTGGCCCTAAACTA
ATCATCTAGCCATGTCATAGTAAATGATGATCACCACGAAAAGCTACAACTTCAGCCAGG
CTTTATTTGCCAACACGCTACCCACCCCTGAATGCCTAAGAGGAGACGACAAGTGTATAG
CAGGACTCGGTCGGACCTGAAAAAGCCATCGTCTTGGGGCACCGACAATTGCATACATAG
CATCCACGAACATCACTCGGAGGAGCGGCAACAGACGGAGAACCACATCATAGGACCGCC
AAGCCAAGTCTCCGTACACGATGCATTTAACAGAGTTACGACATATGTTGACACCATATT
TTGGCATGCGAGAAAACATAATTAAGGTGGCTTCAAATAAGGAAGTGTTCTACATGAAAA
AGTACCTTAGTGTTGACATGAACATTCTCTAAGTTTGGGCCATCGTCAGCTGATTTCATC
TCAAAAGCCGAAACTATGGTCAAAGTAGAGATATGTCATATTCAGAGTACTGTTCGGACG
ATTAAGCCCTGAAGACAACCTCGCATGAGAATATTTTCTACACATATTGTCTTCGTCTCG
TCGAAACGATCGATTTTGATATAAAGATCGTCTCAATCGGAGGTTGTAAGCAACATGTGG
AGCCAAAACAAGACCAGTAGAAGAAGCTGCACAGTCATTTCGGATCCACCGAGTTTTCTG
ACTAGGTGACACCAAGTTGACTCGGTAATTTCGAGAAAATTCACTCGGTAATTCCGAGTG
AGATGCAGAAGATTACAGAAAGTTGGTCATGTTAACTCGGTGGAACCGAGAAAAAAATCA
CTTGGTGGCTCCGAGTTGGTCCGGAAAATTGCTAAAGTTTCCTGTCCGAGTTAGGTTAGG
GTTTTGGATGTTTTGGATGGGACTTTTAGTCCTTTTATTGTACAGGAAGTCCAGCCGCCT
CATATATATGTTAGAGGTCGCCTCATATATATGTTAGAGGTGATGACGGATTGAACAACA
CACAATCGAAACATCAATATATTACTTTTTCATCTACGCTTTATCTCTCCATCGTTTTTA
TCTCTCGTTCTTCGTTGTTCTTCAAGTTTGAGGGTTGCAAATCTCGAGGCTCTAGGGGCA
AGTGAATCGACCTAGGGCAGCTAATAGCCGCCGCACACCCGACGGGGTCCCTCCCGGGCG
TGTGGG