| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1561240
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11496 |
1 |
315 bp |
None |
Available |
Available |
LOC_Os01g20910.1, FRAME:-3, EVALUE:5e-12, 13101.m02222 protein zinc finger, C3HC4 type domain containing protein, expressed |
| MLOC_11495 |
2 |
1636 bp |
MLOC_11495.2 |
Available |
Available |
LOC_Os10g39410.1, FRAME:+2, EVALUE:3e-13, 13110.m03607 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
CDS Structure of MLOC_11496
CDS Structure of MLOC_11495
Contig Sequence (7572 bp)
>contig_1561240 7572 assembly3_WGSMorex_rbca.fasta
TCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCC
TCAAGCGCCAGGGACGCACCCTCTACGGCTTCGGCGGCTAGGCCCCCCTGCTCCGTCCAG
TCGAACCCACTTCCCGCCGCCAGATTCGTAGCTAGCCATGCTCGTTGTTCATTGTTCATC
GTCTTCGGCGTAATGTAATGGAATGGCTGCATCTCGCTGCTGTCTGTTGTTTGGATGTAC
TGTACTACTACTGCTAGCATGCAATGGAGAGCTCTGCATTTACCCCTGGATTCGTCTGCA
ATGTGTTGCTCTGCTGTCAAATCTTATTAGTTCGTTTCCCGTTTCCCGTTGCCTGTCGAT
GTAGTTTTCTGCCCCCAAATCAGTCTCGTTGATGTCATTATTCTGTTGATTTGAATCATA
CCTGCATTTCTGTGTCAGCTTGAAATACCCACCATCAGCTCATTCAAAACTCAGACGGAA
CTTTCCCCAATTCCATGGTCAATCTTGTGCTCTGCAATTGAACAATTGCACGGGAAGCAG
CTGGTTTTTTGTTTTGCTAGTTTCTGAACATGGCAGTAGATGCTGACCGTCTGATGCATT
TTTTAAATTGGGATAAGAGGCATCATATTTCTTGGCCCAGCATGGATTTCTGACTACCTG
ACCTGAGTTTTTGAATCATGATTAGCAGTTGATTTCTTTGGCCGCAGATATCACCTGATT
GCAGATGGAAAAGATGGACCGGAGTGGAGCTCAAGGTGCAGACATCAGGCTCATGGTTAG
TGGGCTTGGTTTACGGTTTCCCATGTTTTCATGTGTCCACGGATCTGTATCGTTGCCCGA
ATGCTGAGATTTCAGGCTTCCTGAAATGATCAAAGGAGCACGATGATATATTGAAACCAG
TTTATGTTAATCCATAAGCACTAGAACCAATCATTGAAACCAGTTTATGTTAATGCATAA
GCACTAGAAACAATCATTGAAACCAGTTTATGTTAATGCATAAGCACTGCAACCAACGTC
CCTCCTCATCTACGCAATGATAGTATAGTCTATATTTGACTACACAAATGGCATTCTTTC
ACTTGCAGAAAACATAGTTTTTTTACTTCTGTAAAATGCACTTGAAGAAAACGGAGTAGT
ACCTGGCCGTCGCCGCCGAACTCGAGCCTGATCTGCAGCTTGTCGGCGACGAAGACGAAA
CGGAAGGTGAGAGACTCCCTGGCGTTGCCGCGCAGAAACGAGAAGGTCCTCTTCCACCAC
GCTTCGCAAGCTGGAGGAGCAGGCGGGCAAGCTGCAGCGGAGCCGACGGCAATGCCATCA
TCCGTGGCGGCAGCAGCAGCAGAAACGTGGCTGCGAAGAGGAGGAGATGCGCTGCGGGTA
CGATCTTAACCTGCGTCGTCCAAGGTGGCCGACGGGCTAACTGAATCTGAAGAGCGTGTC
GGCTGATTATTGCAGCCCAGCGTCTCCGTCTCGCAGACGCAGCAGCTGTTCTTGTTCTTC
TCTGGGCGGGGGATGCCGAGACTGAGACCATCCAGCGGCGGCATGACAGGGGTGGTGGAT
TCTAACTTTTGGAGTCCGCCGTTTAGAAGATCGGCAGGCGCTTCCTCTGACGGCAGATTG
AAGCGCTGGGACATGAAGGTTGCAGGATGATGATGATGAGGAGGTGACGGCTGGGACTGT
TCACTCGTGGCAGCCGGGTCAGCCTGAAGCAGCGGACGACAGCAAGGAAGGGAGGAGGGA
ATCTGAGGTCTCGCCTGCAGCGTCGCCGACGAGAGGAGCGATCGATCGATCGATCGATGG
AAGGGGAGGAAGATGATTCGCTTCGCTTGGGAAGGAAGCAGAGCAGAGCAGAGCAGAGCA
GTGCAAAGGAGGAGGAGGAGTCGATAGGGACGGACGCGGTTCGCTTACGTGGTGTGGGCA
GTTGAAAGGAAAAAATCCCTAACTTACTACGATGCCACATACTCCTATTTTTCTCAGAAT
CATTACGATCCGACATGAATGGCACACGCCATCCATCTTGTTTCTGGTTTGACGATATTT
GCATTCATCGTATGCCTTAGTATATATAGAGTATATGGACTGAAATATCTTAACCGTATC
CGCTATATAAAGAAAGGATCGGGAGATAAATTAGAAAATAACAAACGTAATCCTAATGAT
CATGCTCACTCTCCTCCCCGCGCAGTCGAAGCATCGTCAGTGGCACATAGACTGGACCGG
AACTCCTCGAAGGTAGACGTCGGTAACCCCTTGGTCATAACATCGGCAAACTGTTGTGCA
GTCGGCACGTGGAGGATGCGGATGCGTCCGAGAGCCACTTGCTCACGCACGAAGTGTATG
TCAAGCTCAATGTGCTTCGTACCGCGATGATGAACGAGGTTGGTGGAGAGGTAGACGTCG
GAGACGTTATCAGAATACACAAGTGTAGCTCGCGAGACATCGTGATGAAGCTCCTGAAGA
AGTTGGCGCAACCAGGAGCATTTGGCGATAGCGTTGGCCACCGCTCTGTACTCGGCCTCG
GCACTAGAGCAAGACACCATCGGTTGTCGTTTCGACGACCAGGAGATGAGGGAAGACCCG
GGGTAAACGCAGTAGCCGGATGTAGAGCGCCGAGTGTCGGGGCAGCCTGCACACTCGGCG
TCAGAGTACGCAACCAGCTCGGTGGATGATCATGCTGTCAAGGTGAGCCCGAGGGACATG
ATGCCGCAAATGTAACGAAGTATCCGTGTGACCAAGTTCCAATGGCTGTCGCGAGGAGCA
TGCATGTGAAGATACACCTGTTGTACTGCATACTATATGTAGGTTTGGTGAGAGTCAGGT
ACTGAAGAGCGCCGACAATAGAGCGATAAAGCGATCCATCCGGTGCAGGAGAGCCATCAA
GTGCGGAGAGCTTGGCCTTCGTATCAACAGGAGTGGCGACAGTCTTGCAGTTAAGCATGC
CTGCGCGCTCGAGAAGTTCATGTGCATACTTCTGTTGATGTAAGAAGAAGCTGTGAGAGC
GCAGAATAACCTCAATACCAAGGAAGTAGTGGAGCGGACCCAAATCCTTCAAAGCGAACT
CGGTGCTGAGGCGAGCTGTGAGCTGCCCGAGAAGTTCGGCCGAGGATGCCGTGAAGATGA
TGTCATCAACGTAGAGGAACAGGTACGCCATGGCATGGCCGTGAGAAAACACAAACAGGG
AGGCGTCGGAGCGAGTAGCTCGGAAGACTAACTGGTGGAGAAATGCGACGATGCGTTGGT
ACCACGCGCGAGGTGCCTGCTTCAAACCGTAGAGAGATCGAGAAAGCAGACACACATGGT
CCGGATGAGTGGCGTCGACGAACCCGATGGGCTGCTGGCAGTAGACCTGCTCGGCAAGTT
GGCCGTGATGGAATGCGTTGTAGACATCCAACTGATGCACGGGCCAGGCACGAGAAACCG
TGAGTTGGAGGACGGTGCGGATCGTGCCCGGCTTAACGACCAGGGCGAAAGTGTCGGTGA
AGTCCACGCCGATGCGTTCATGAAACCTGCGAACCACCGAGCGAGCTTTGTACAGCTCCA
GGGTATCATCGGGGCGATGCTTGTGGCGAAACACCCACTTCCCGCTAATGACGTTGGCAT
TGCAAGGAGGAGGAACGAGTTGCCACGTACAATTGCATGTCAGCGCATCGAACTCGACCT
GCATGGCGGCAAGCCAATGGGGGTCGTGAAGAGTGGCGAGAACCGAAGAGGGTACTCATG
ATGGCGATAGGGTCGAGTTCGACACCGTGCACAAGTACTACGCGGAAGGATACCGAGTGC
TGGGTCGAAGTGCGCCAGTGTGCGACCGAGTTGTAAAGCCGACTGGGGGCGCCAGAATGA
GGTCCAGCGATGGATCGCGAGAGACCGGACTCGAGGCGATGGAGGACAAGGTTGAAGGAG
CATCCCCTGGGGTCCAGTCGTCCGAGCCGATGTCGGAGGCGGTAGCAGCACACGAGTCGG
CTTCAGCAGACAAGCCAGCTGTAGCACCCGTCGAGATCGCACAAGAGGCAGAGTCGGTCG
CAGTAGGCGAGCCGGCTGCAACACCCGCCGTGATCGCGCGAGAGGCGAGGATAGCCTAGC
TTGAGGAGCCCACGCGAAGGGGTGGTGGCGACGGAGCAGAATCGCCAAGGGACGATGGCG
ATGATGAAGTCGGCGCATCAGCTGGAGGAACCTGCTGAAAAGGAAACACTTTGTCGTCAC
CATGCCGTGAGTCGCCGCGTTTGCAAATGACTTGAAGCCGCCGCCCAGCTATGAAACCGG
GTGACCCTCTCGCTGAAGTTGTTGAGCATGGAGTACACCTCGTGGTGGGTAATCGGTGTC
ACGCGGGCGTCGAGGGCGAAGACGAGGGGCTGGTAATCCATGTCCAACCCGTGGAGGAGG
TAGGAGATCAGTTCATCATCCTCGTTCGGCTTGCTGTCCGCAGCGAGTTCATCGGTGAGG
TCGCGCATGAAGGCGAAGTACATAGCCACTGATTGGTTGCCCTTCTACGCATTGTTCAAA
GTAGTGCAGATGTTGTTGACGCAACTAAGGGACTGCAAGTAGAACATGCCTGCCAACGCT
GCCCGGAGCGCCTGCGTCGTGATGACCATGATCATCGTGATGAGCACCTCTTTGGTGAGG
TTATTGAGCAGGTAGCCAAGCACCTGCTGGTCCTCCCTCACCTAGATTGGGTGGAGAGGA
TTGGGCTCAATGGTTTCCTTGTTGTCCTTGTCCTTGGCGACGAGAAACTTGGCCGGCTCC
GACAAGGTGCCGTCGACGTAGCCGAAGACACCGACACCCCTCACTATTGGCTTGATTTGG
GCGCACCACAACACGTAGTTCGTGTGGGGGAGCTTCTCCGTGACCTGCCCATTAAGGCTC
GGCTGGAAAGCATGGGAGGAAGACATGTGCACCGTTTGGTTTAGGGTTTTGGAGAGCTGA
AGATTGAAAGAGGAGGCTCTGTTACCACGTTAGATTGCGGTAGACGTCTTATCTCATTAG
AGGGATGAGTTGCTTGTTAAGTAGAGGGGCACATCTCCCTGAATAGCGCATACATAGTTG
GTTAGGATTACAAGCTTGAAGATCAAGGAAAGAAGAGACACAGCATGCTATAGTTGAGAG
AAGATAAACCTCATTGGGGCTACCAACAACCTCTCAACCAAAACCAATGAATCTACGTTA
CATCTTATGTGTACATGTTTAACAAGATGCACCGTAAATGTAAAAAATATCTTTGCTAAT
CGGGTCTTTTCCCTTCATAATTTCAAGGGGAATGAAGACATCTTTTAGCTTTTTTAACTG
TATCATGCGAAGAGCAAGTGAAGCATTAGACTGACTTAACCAACTACATTATAAAAAAAA
GTCGAAAAAATCTGAAATTTTGAGACAAGAAACTTTATCAAATGTTTGAGCTTCTTGCAA
AATTTCAGCCAGAAAAACACATACGAGGAGCTCTCATGAAGAAAAAAAACCCTGTTCAAA
CAGTGCAAAAAATTAGGAACATTGATTTTGTCTTTTTGGTGAGAGCTCATATGATCTTAT
TTTTGGCTGACATTTGGCAGGAAGCTCGAACATTTGATAAAGTTTGATTGTTCAAAGTTT
TATATTTCTTCGATTTTGTTTGGTCCTTTTTTTTTTTCATTTTTTCCAAACTCTGGTGTA
GTACACCCGAGAGTAGAAAAGCCAATGTCATGTTTTAACAATAAGATGCACAACATATTA
TTTCCCTCGGAGGCAAACTCAAGATGTCAAGAAATTATCTGCCAGATTTGTACACGTAGA
GACCAGCCACACCGAGTATGATCAACAAAATATAGCCACTCTGTGATGGAATCAACACCC
CAAAGCTGATTGGCTCGAGCATGCATGTCAGAATGAAGCAGATCGGGTGGAAACAAAGGC
CCGCCTCGTCTTGTCAAGATCCGTGCCGCTCGACAGCCTCCTCGTCGCCGGCGCGCCGCC
CTTGACCGCGGCGTCCCCCGTCTCCACGTCTATGCGCACCTCGGCCTCAGCGTCGTCGTC
CGGCGCCTCGACGTCGGCGCGGCACAGCGGGCACGTGGAGTTCCCGCGGAACCACGCGTC
GATGCACCCGACGTGGAACCGGTGGCCGCACGGCGGCAGCGCGCGCGCCTCCTCGCCGCG
CTCGAGCCCCGCGAGGCACACCGCGCAGTCCCCGGCATCGGCGCCCGCGGTGACCACGGG
AAGCACGCGGAGCACCGCAGGGTCCAGACCCCGCTGCAGAGGTGCCACCGCCACGCCGCC
GTGGACGGCGCCGTCGGAGATGGACGGCAGGCTGTGGCGGAGACGGAGGCGGTCGCCCGA
GCGCCGGCGTCCGCCGCGGGTGTACGCGTGCAGAGCGACGAGGGCCAGGAGGACGCCCGC
GAGCGCCCCGGCCGCCGCGACCAGGAGCATGCCGGCGACGGCATAGCTCGACGGACCACC
CATCTGTCCGGTACTGGGCACCTCGGACCGCGGCATCCACTTTCCCGGGATGTCCCCAGG
CCGGCATGGGCTCGGCGGCAGGCCATCGGCGCTGGCGTGTGGGCCGTGGCCGTGGCCGTC
GTCGACGCCCATGGCAGATTGTACGTAGCGTATAGCTGCACTGCACACACCCGGAACAAA
CCGAACAAAAATAGATTGCAACTATGGCTCGTTCCGGAGCAGTGTGAGGTTTTCGTTGGT
GCAATTCCATCACTTATACACGTACAAATATAAAACATGACTAAGAGATGTGGTCGCCAA
TACGTACGTGAAATCATTACGTGTTGTGCCGTTTTTTTCTTTTGGCAGGTCGTGCGGGGC
ACGCTCTGAAGACCGGCGGCCAAATGGACGGCACCGGTGTGAAGCTGAGCCTATACAGTG
ACAGTGATTAGGCGCGTACGACCATGAACGGAGTTGACGAGCGAGTGATGACTGATGAGT
CGTCTTTTTTTTTCTTCCTTTGCATGCAGCTTCCATGTCTTTTCTCCCTCCGCGACTTGG
ACTTTTCGAAAACAAAGTTCGACAGAGGGCGGTGCCAATGGAGATCGACCAGTGCGTGAG
AGACGACGCGGGCAATTTCCGGAAACGTCAGCTCTTCGTTTTCCAAACTCTTTTAAACTA
ACAAAAATGTGTTCTATTTTTGCACGGTAAGTGCATTAAAATTTAAATGTATTCTATCTT
TAAAACTATAGATAATAAATGCATACATATATTGCATTAGTGCACGAGAGCACCTACAAG
ATAGAGTGGGTGGAAAGGTACACNTTGCAAGCACGTTTGTGTCTTCCCTGTTAAAGAAAG
GCGAGATAGATCCGTCAACACATCATCACATTATAAAATGTGTAAATACTTTTCTGGAGC
ATGACATGGTCAGTCTTAACTCACTACACTTACATATAATGATACGACACTTTTTTTATT
TATAGAGTAGTGTTATATTATATAATATTTATTGCTTTAGGTATTCCTTCCGATTAACAT
TAAAAAATACCGCTGGTATCTATCGGTTCTCAATGCGAAGANACGAGAGATACATGTATT
GGACTCACTTGGAATTGGCANNAACCGAAGTGACCTCACTATGACGGTAAATATCTACTT
CATGTGTTTCTT
