morexGenes - Barley RNA-seq Database

Contig contig_1561224
Source Contig contig_1561224
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1561224 (7474 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_1561224

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11487	2	5816 bp	MLOC_11487.1	Available	Available	LOC_Os06g41660.1, FRAME:-1, EVALUE:0.0, 13106.m04350 protein CC-NBS-LRR protein, putative, expressed
MLOC_11486	1	1075 bp	None	Available	Available	None
CDS Structure of MLOC_11487

CDS Structure of MLOC_11486

Contig Sequence (7474 bp)

>contig_1561224 7474 assembly3_WGSMorex_rbca.fasta
AAGCGCCGACTGTTCTGGCTGGTCTTCGCAGCGATGATGTGGACTCTTTGGACTACTCTC
AACAAAATGGTGATTGAGCGGGTCAGCGGTATGCATCTGACTCGTTCTTCAAATTCCTTG
CCTTCTTGCAGCACTGACATCCGCTCGCTAGGATCCGAGACCGCGACCGGCTTCAGTGCT
ATCTGAACGCGCTGATGACGTTCGCCCGGCGGCTCTCCGCTCGCTCGCATGCTGCTTAGC
TTGCCTCTACGATGGCATTTTCTGTTTCTTTTTTTTCTTGGGCATGACTGTGATGTTGCC
CCCAGCGTTTTCATGTTTTATCACTCTGTTGGGCCGTGGTTGTCTCGATGCTAGAGATGC
TAGAATATTTGCTTTATATATAAAGCGGGGCAAAAGCCTGTTTCGAGATTGGGTGTAACG
AGTTTTCCCAAGTTTGTTTGGTTCATGTTCAAGGAATCGATTACCATGGCTGTACTCTTC
TTGCTCGTCCATGTTGCTCGCCGTCCGCCATCCTCCCCCTGTAGATGGTCTGCTCTTGCT
TGTCCCCAACCGATGAGGATCAAAAAGGCCGCCGTCCGTCCCCAAAGTCAAGCGCCGCCG
GCCATCCCCGAGACCACGCCCGCTGACTGTTCGGATCTTGTGCCCCGCCGGCCGTACGCG
AAATAAAGTGTCGTCGGCCGTTCCCGAGTTCAAGCGTCGCCGGCCGCTCGGGTCTTGTGC
GCCCCGGGCCGTCCTCGAGCATGTGCGCCGCCGGCCGCCTGCGATGTCAAGCACCGCCAG
ACCTTCCCGAACACAAGCGCCGCCGGCTACTCCAAACTCGACGGAGAGCAGGCAACAACT
GACTAGGAGGAGTAGGTCGCGATGGAGCGAGTGCACTCGAGGGAGGGAGGGGGTCGTGCC
TGCGGGCTTGCGGGGGAGAAGTGCGCTTGGAAGGGAGGAAGAAGGGGTCGTGCGGGGAGG
AGTGCGCAGAGAGGAGGAGGGAACGGTACCGCAGTTACCAGTGGGAGGTGGGCGGTATCG
AGATGTAACTGGGCTGCACCCGTTTACGGGTGGACTTGTTTACTGTGTGAATTAAACAAA
CGCAGGTATCGTTTTCCCTTTACGGCGTAAAGAGAGGACGGCTGAAAATCTCTGAAACAA
ACGCCTCCTATGAATATATTTTAGTTTATTGAGCCCTGCAATTGTACTCTGATGGAGGGT
TTTGCTTACATATATAAAACGAGACGGAAGTCCTTTTAAATAATTATACTATAATAGAGG
ATTTTTCTTCAAGAAAAAATCTGAAAAAAAAATGCATCACACCCTAGTTTTGAGTGAAAG
TGATAAACTGACAGTGACACTGGACTTCGATCAGAGATAGGCCATGGTGGACACACTGCT
AACTGAATTGCAGAGCGGACGAACAGAGCCGATAATTCATATAACAATCCAAATGAACCA
AAGCTTATTTAGTTATTTGGACTCGCACGGTCGCACCAGCAGTAACCAGACGAGAAAGAA
CAACTTCCCTAGATCCAGGTACCATAACCCAATGGCAAAGGCCAAAGGCATCATTCGTCA
ACTGTAGTTATATTCGGATCCAATGAGTTTGGCTGCAGAATCAGCCAGATGAATTGCTGA
TGGAAATTGTAAACAAAATTGCCAAACAGTACGTACGGTCGAGTTGCTTAATCTAAGGAA
TTAGGAAATGTACTTCATTTGTTTTTAGAGAAACTGGAGTCCATTTGTGGAGACTGGAGT
TAATGTTGCTCTATCAACTTCCACAGAAACGCAGTACAGAAGTTTCAGTCCTCTAGTAAA
CTCCAAAATCTCCTCAAAGCGATGGATATTTACATGAATAAAAGGATGATGACAAGTTGA
TAACACTCATCTGACAGAATCGGGGTGCAATGATGTCCAGTGTTGGAGCCAGCAAGCTTT
CATTTTTGACTCTAAAGTGCAGTTTAGCTTGACTGTAATGTCAAGCTGATTGGACCATCA
AACCAAATTGGTTTGCATGATTGCACTTAGCTCACAGCTTTATCCTAGCAAGTTCAGTAA
GCAAAAAAATTATGTCCAGGGATCCATGACAAGCAGAAGTCGGATCAGGCAAAATATTGA
AGTTTGCTTATCCAAAAATAAGGCATTACCCAAGGAAAAAAAGCATATGTGAAATCGGAC
TCGGGATAGAGAAAAAAAGGACAAGTGTCAAGACCTCTGATGGATCAGACATGGATTTGA
GGTGGATCAAAAACAAGAAAATGGGGAAAAGTATGAAATCATGAAGAACGGTGAGGAACT
TGTGTAAATGTTGTATGTAAAGTTATACTACTGTATTGATAATGATCAATATTTGGCTGA
ATAGTTGATCGATACATCTCGTCTAGTTACTGCCCCTTATATAGTATGAGGGGTTACAGA
AAGTAACTTTAACTTGAAAATAAAAGTAATAATAAGGATGGAATGAATAAATGTTGACAG
TCGTACATCTTCTGCCTTTGGGTTTCTTATCACTACAACTCCTCTTAGCAAGTACGAGTA
CCTGACAACAAGCCCTGAATATTTACCGCCTACCAGCTTCCCATTTGCATCCTGGAAGGG
CGGCAAACTTGTTCCAATCTGGACCTTCCTTCCGCTGAAACTGCTCCTCCAGTGCTTGAT
GACATCTAGACAGGAAAAATGTTTCAAGTGATACAGGAAGACCACTCCGTGGCAGTGACC
TCAGCCGGGGGCACCGGTCAATGGAGAGAACCCGGAGCGAATAAAAACCAGTCATATCAG
GAAGCCACAATAAATCAGAACAATCAGTAATCGTCAGCTTCACAAGTGAAACAAGGTCAC
ACAATTTTCGCAGAGATGATAGCCCATCGCAAGATCTTACAACCAGCTCTTTCAGTGTTG
TTTGGTGGACTGCTTTAGACAGTCGCATAACTTGAGGGCACCGGGACAAATGTAGTTTCT
GAAGACATGGCATGTCATCCAAGTACGGTACATATTCCAGATCATAACATTGGTCTATCT
TCATCTCTTCAAGGGACAACAGTGCTTCTGATCCCTCAAAAGATGATATCCAATCACATT
TATATATGTACAACTGTTTCAGCATCCTCAATAGGTGCAAGCTTACCGGTAAACCCGGTA
TCTCAACAGTGTCACATTCTATTAAGTGTAGTGTAACAAGTGACGGGAGATTCTTCAATA
ACTTGGAAAAAGAGGATGGTTGCAGGTAGCACCGTCTTAACTCGAGGAATCGAAGTGATG
AAGGAAGTACGGTGGCCCCATTCTCACCCCACAATGTAGTAATTACAGAGGGGGTATTTG
CCCGGTTGATGCCACATATTTGCAACTGTTTGAGTGATTTCAGATTGCTAAACACTGTGG
TGGACGTGTCTACTGAATGGTTCACATAGATGTCCATATCTTCTATACACTCTAGGTGAT
GAGCATGCAAGACATGTAAGGAGCTTGATACCAGCCTACAAAACGATCTTGATAAATCAA
GACTATCCATCTGAGCCTTAACTTGGATTCTTTCTTGGTCAAGAACAGCTATATGTCTGA
GTGTACGAGGATGGGTAGGATATGATCTGAGCCGTGGACAGCCAGCAACAGAGAGGTGTC
TGAGATTCTGCAACACTTTATCATTGTCCACAAGACACCACTCCAATTTAGGTAGGCGTT
CCAGAAGCAATCTTTCCAAAGAAGGGAATCCAGCATGACCAAAGAACTCCTGACCGAGTG
CTTTTAGTTCTTCCATTCGCCGCACTTCAAGAGTTCTGAGTAAGGGGAGATCCCCTAAAG
GTGGAAGGACCTCCCATCTATTACAATCTCGTAGACAGATCAATTTCAATCTTCTCAGCC
AATCAGACTCTAGCCAAGAAGGAGACTTGACACCTGGGTACCCACTGATAGTTAGCTCAT
CAAGATTGCGGTGCGGCTTTAATACATCAAGCACCTCAAAGCCCTTGTCCATATCATGAG
CACCATCACATGATCCCCATTCTAGCTCCAACTTAGAGATGTGCTCCTTCAAGTCTAGAT
GAGACTTTGCAGCCTCCTCCCTGTTTTTTACATTCTCCAGAAACTTAACAGAAAGCTCTC
CCCTAATCTTGTTTAGATCCTTCAGTTGTACCAAACTTTGCTCCTTCTTATTGACAAGGA
ATTCTCCAGAACCCTCGACACAGGGAAGCTGAAACACACCTGATAACATGAGAGTGTAAG
CCTTCTCTACATCAACATGCACCAAGTTAATGAGCCTGCTAATGCTTTCAGGAAGCCTGA
AATGACCTCCAGTAGTGTTCACTTCCCTCCTCAAATATTTCAGTTGTTTCCTCTTGTTTG
AGCAAGATATCCTCGCAGAGTAACATGAATGATACAACACAAACAATGACTGTAGATGAT
TGAGTCTGGAGATTGTTGTAGGCAGTGGGTAATAAGTGCGTTGAATGGCTAGATAACGCA
GGTGGATCAGATCATTGACAGCTTCAGGAAAGCTTCCAAAGCAGCACCCGCTTACATCAA
GTACCCGCACACTCTTGAGTTTATTGAGTATATCATGACTTAAACAGACTTTGGAGCAGA
ACCAAGAATCATTCAGAATCATAAATGTACGCAATCTCCGGAGACCATCATAGTTCACAA
GATCTCCCAGTTGTTCAGCAGACACAGACAAATGCCTAATGTAATGAGGAAACTCCCCAA
CGCTGCCATGGTCAACCCTGAAGCATTCCCCATTGGAAACATGAAGTGCGAGGTCATTCA
GTGAATCATGCATAACGTAATATGTTTGATCTCCACAACGGAGCACTTGGAAAAATGATC
GAGCTAACAGATCATTGAAATAGCCCCTTCCAATATCTTCCAAACTTCTACTGTTATTTC
CTTCTAGATGAACAAGGCCCTGAGCTATCCACATCCGGATCAATCTCTTTGAATCAATAC
GGTAACCCTTTGAGAATAAACTACAATATGCAAAACACTGCTGTAGGTGTTCCGGCAAAC
TTTCATAACTCAAGTGTAAGATAGTTAAAATATCATTTGGATTGAGGACATCTTTTTGAA
GAACATCCTCCCACTCTGCATCACTGTATTTTCCATTTAAATGACCACCAACAACCTTTA
GAGCTAGAGGTGAGCCTTTAAGTTTTTGAACAATTTGGTAGCCTAACTGCTTCAACTCTG
GATAACCTTCTGGCTTCCTGCTGCCAAATGCACATCGCCTGAATAGCGACCAACTATCAT
CCCTTCCCAGACCTTCTAAAATGAACAAGCTTCTAGAATCCAGCATTTTTGCAACCAATT
CTGTTCGGGTTGTCACTAGAATCTTGCTTCCCGTCATACTTCCTGGCCTTGTAAACATTT
CCTTAATAGGAGCTATTATGTCCATCCACCTTTCTTTGTTGATGTGTTCTCCATATTTCT
CATCATACCACACATCATCCAACACTAAGAGAAACCTCTTGCAACGAAGTCTCCATCTAA
GTTCTTCCTGGAGCTTGCTAAAATTAAAATTGGCCAATTCAGCATTCTCACCACCAGTTG
TGTATGCTATGATCTCTTTGGTAATTCTAGTTTTGTCAAAGTTATTGGAAACACTAACCC
ACATTCTCACGTCAAAAGAATCCACGATGCGGTCATCATTATAGATCAGCTGGGCCAGAG
TAGTTTTGCCAATGCCCCCAACACCAACAATAGTGTGCACCTCTGTCCTTAACTTCTGGT
GAATACTCAGCAAAGATTTATCGGATATATACAGCAGCTGACCCACGAGTTCATCTATCT
CCTTTTCTCTCCCAAAAATCGCATCTTCATGCAAAAGGGATCCGGTAATTCTTGCTGGGA
CACACTCTAGAGACTGAATGGGGTTAAAACCCTCCAATGCCATCACCCGGACAAACATCT
CTGCAGAAGCTCTGACCCTTTCCAAGCTTTTGAGGACCTTCCGCAAATTTGAGCTGAACT
TGTCAATGTTAACCAGACGCATACCAACAGAAAGAGAAGAGGAGCCTATGCGTCTGAGCA
GGCCTTTTGGCTCAACCTTTTCTTTTAAAAGCATATAATCAAACTCATCCAAGACATCTT
CTGCATCAGAGACTGCATCTTTCATCTGCTGCAATAACAACATCTGATTTATGTCCACTA
CATGTTGCCTTTCAGCTGCTCCAACTACGAGCAGTATATCCATTAAAGTGGCCTCCAAAT
TCTTGAGATCAGATAATATCCCAGATTTCCAATTGTACTGGCTTGACATATAGGACTGCA
CCAAAGAAACCATCCTTCTAATAATAGGAGAAACAACCCATCCTACAGCACTGACTGCTG
ATACAGTAGCCATGTAATCAAGGAATATTCCTGTACAACATAACGATTAAGTGTTTGTAG
TATGGGGTGGATAACCAGTTGCAACATACAAATAAATATTGCACAACTACTTAATATTCA
GAAACTTGCTTGCCACAGAGGATCAAGTAAGCTGTAGACCACATATCCAACATAAACTAG
TACTACAGTATAAAATCAACTAGTGATCTTTCATAGTCACACTTGATATGTTTGACACAC
TTCATACTGTGAACACTTTTGATAGTCTCCATCAGGTCTTGCATATCCATCTAAGACTAC
CTTTTCCAAGCCCATTAAACTAGATGGCTTGTTGCAATGTTTTCACCGAACTGGAGAAAT
ATTATAGCACTTCATAAGTGTATGCACTGACAGAACGTGCAGCACGGTGGTAAAGACCCC
TAGGGTTGGGGCTGCCTGCCAACCAGAGCGGGTTTCTTCCCTCAAGGGTCGGATTTTTTC
TTTTAGAATATAGAATACGGTGACGGAAACATCATTTCTAAAGAACTACAGTTAATTCCC
AGGTTCCTGCGTGCCGGAATTCACATGAGGCATTGATCTGTCATCCGATGGCTCGCCTTG
GAAGATACCGGTTCGCCAGCGATGACTGTCCTCGTCCCTCGATCTTCGATCTAACGGCTA
GTACTGTACAAGTTTCCGATAAAGCATGTGATCGGTTTTGCTTTTCTTCTTCTTTCACTG
AGTTGTAATGGCTATAAAGCCAACCCTCCTTGTCATTTTGGGACTATCTTGATTTGTGTC
GGGTGTAAACCCTAGCCGTCAGTGGCGAGCTAAACCTACTTTCCCCTTTCATAAGCAATA
GAACCTTAGTTTGAGCTCTCCAATCTTCTTTGAAATTGAGTGATTTAGTGTTAAATTCCT
TCATTCAGAACTTAAGGGTTTGACGGGACGATTGCTGACTAGCAGTGTAAAGTGACCCAA
ACATCGCACCTCACTAAGGCCTTGTTTGGTGCGCAAGGTTTGGGGAGGTTTCTAGGGGAT
TATCCCCGAGGGGGCCAAAAAACCCACGATTCCCTGCATGTCCATTTGGCGGACAGGGTT
TGTGGTGAGCAAACCCCTTCAATCCACTCAAATCCACCTCAAATCAAGTGGTTTTGAAGC
ATCGAGGGAGGGCTAGTGGAACTCGTGCAATGGG