Contig Data
morexGenes
Links



Map Locations of contig_1561153 (5396 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1561153

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11453 2 1553 bp MLOC_11453.1 Available Available LOC_Os01g43590.2, FRAME:-3, EVALUE:7e-105, 13101.m04508 protein HSF-type DNA-binding domain containing protein, expressed





CDS Structure of MLOC_11453






Contig Sequence (5396 bp)

>contig_1561153 5396 assembly3_WGSMorex_rbca.fasta
AGCCTTTTTGCATCTTGTTTGTATCTTTGTTGGCTCTTCTGAGAGATTAATGGATTATAC
CATTGTGAGGGAGTGATGTGCTTTGCACACCTCACAATTTCATAAATGTGTATACATGGG
AAATACCACTTAGTATTGATATTTCAAGATTATCTAGTTTTTATGTGGTATGTCTTACTC
ATGAGAATTTCAAATTCTATATGGTTCATTAAATATCTCTTGTTGGTTTTAATTTGTCAC
TTATTAATATTGTTGGGTTTTCACATTATGGGGGAGTAATATGCTATGTGCATATTAAAA
GCCTAGAAAATGTGTACATTTAAAGTATTGCCACTTAGTGTTGATATTGTAAATTATCTT
GTTCCTAAGTGTCATGTTATCTCTACAAGTGTCATTTGTTTGCGTTTTAGGGATAAAAGA
TGATGTTGGGTATATTTGTGATCTACCAATGACTATTATTTCCAAAATACTTCTTGTCAT
TGATAATTGGTATTTCCTCATGTGGTAGAAATATTAACATTGAAGACTACGCGGCGGTTG
AGCGCAAGTTTTTTGTCCCCAGACTTTTCCTTGACACGGGTGGCGGTGGAGGGTCAATTC
CGTCAGTGACGTTAGCCGGCGGCTTCCGTATCCATTCTAGACGAAATCAAGGGCATTAGT
GGCAGTGGCTGGAAGAGATGGTGCCTCGGGCGAAAGTGGGAGGAGCCGAAATTTATCATA
GAAACTCAAGCTACCGTTAGGAATAATTTGTTAAATTGTTATTCCTCTAAATGTTAAAGA
GTCCGGCCAGGTGTGGTTAGCTGCTCATTTTGCTCCTCTAAATCCTTTTAAGGGATCGCC
TCATAGTGAGTGTTTCGATGACGAGCAGTTGCGGTTGGTTTTTCGATGATATTCTGAACT
CGCGTTTTTCTTTTTAGTCTACTTTATTTAAGTTGGGTCACACAAATTTGTATTTTCGTT
AAGATAAGTAATGGAAAAAGTTATGTCCGGATCAAAATAAAACTAGAGATGCCCATGGTC
CCTGAGGTTGACAAGATGATGAGAGGCCTGCTATCACCGATCTAATTATTGCATCTACTC
CATGTGTCCCATCATATAAGCGTCTGTTAATATGTATCGATGGAGTATTGCAACCAATAT
GCTACGGAGGGAGTACTAATTAACACCTTGCACGGTCGATACGCTGGTTGTTGTACAATG
TCCACGCAACATTTCGTTCCGAACGTACGCAAAATGTTACACCGTCTATTGTATATGTAC
CCTGTAAGAATAATCAAAACACGCACCGATGCTGGTATTACTACATGAGTATAGCAGAGT
TAATATAACGTTGATTTTTGTAGGCGTGTACAAATGATTGCTAAATTAGTAAGTAGAAGA
AGGTAGTGCATGTGCATGCACGACGCGCCGTGTTTAGAAGAAACACTGTCCAAGTAGGCA
GAACGGGAAGGGGGTCTCCACCGCGGTCCCACCGTCAGTTAGGCCCATGCCGCTGCCGCT
GCCGCTGCGGCCGCTCTCGAACTCCGGCACCTGCTGCACCCCAGAGCTCGCGGAGGGCTG
CTCGAAGGTTGTGAGTTTCAGTGGTATCGGCTCCGCCCATTGCCAGACTCTGACCCCGCC
CATGGCCGCGTCGCCGAGCGCCAATAGCGGTGGCGGCGGCGGTGAAGGTGCGGGCTGAAG
AGGAAGCGCGATGGGTAAGGAAGTAAAATCACGGGAAGGGAACTGCATGCGCTGGCGCTT
CTTCTCGGCTGCCTGTTCGAGAAGGTGGAGCGAGGTGGCGCTGGGATCCTCGGCGAGCCG
GGCGAGGAAGGACATGAGCCGGTCAGGCCGCCGCTCCGTCGCCTGCAGTCGCCGGCTCAT
CTTCGCCAGCTGCTCCCCGATAGCCGTCTGCTCCTTCCGCAGCCTCTGAACCTCCTCAAG
CAGCGCCTCACTCTCCTCCTCTTCCTCTTCCTCCTCCACTTCGTCTCCCATATTGGCCAC
CACGTGCTGGTGCTGCTCAGCGCCGCCGACTGCAGAGGAGCAGGAGGCGCCAACACCGGC
CTCGCCGCGCTTCTTGCGGCGCACGATGCGCGGCAGCAGGTGCGTTTGGCCGCGCAGAAA
CGACTCGTGCGCGAACTCCCATCGGTCCGGGTGCACCTTCCGGAAGCCCTGCGCAACAAT
TCCATCCAAGCAAATTAAGCAGACATTACTTCTAGCAAGTGTACAGTGCACGTGCAAAGC
TTAGAGTACCCTTCGTACAAGCAAGTTGTACTACCATTTGAAGACCACTCCTAGTCCTTC
CTTACTAGGACAACACAAGACAAAAGACGGCGGCACGGGAAGCCTCACTAGGTAGGATAG
GAGTACTCACATATGTGTTGAGCTGGCGGACGAAGCTGGAGAAGTTGCCGTGCTTGAAGA
AGCAGGGGAGGAGGAGCTGCGAGAAGCCGGCGACGTCCGGGACGAGGAAGCTGTTGTTGC
CCTTCCCCCACCTGACGAGAGCGTCCGTCCTAGGGTCACACACCATCTGGTACGTCTTGG
CCACGAACGGCGCCGTCTGGAAATCGCCGTGGCCGCACCCGATCAGCCCCAGCGCGAGCT
CCGTATGGAGGCTGTCCATCCTATCTATGTACCTCCTGCGTACTTGCCTCAGGCACGGGG
AGTTCCCTCTACTCTAACTCACCCGCAGACGTCAAAATCCCTCAAAAGGCAGGCAGGCAG
GCAGGCAGGCAGGTGTGGTTGCTTGCAGAGAGGGGCCGGGCTACGCCCAATTAGGCTATG
GTTACTAATTATGGGCAGCGTGCGTGACAGGAGGACATGGCTAAACTAATAACCCATGTG
ATGAGCTTACCTGTTCGGGGTAATCTATATATATAGACGTCTCTGGCGCTTGGAGAACGG
GACAAGTGTCGAATTGCTGATCCTTCACATAGACTACCAGCATGTCGATCGATCCCCAGC
CTTCTTGGCGTCGCCATCGCGTGAGATTTCCGGTGATATATAGGAGTACTATAATTAAAA
CCGTGCCGCCTTTTGGACCAGAGCGTGCTCCAACAGTGCAGACAATGAGGAGGTGACGCG
CCGTCCCGATCGCATCAAAACCCAGCTAACCCAACTGCCTCGATCATCTTTTTTTTTCCT
TTCGGAAAGGAACTGCCTCGATCATCTGGTGCGGTCTCTCTCAAGCTCGCTCCTCTCGAT
CTGGCCGCGGAGTAGGGGCTAGCAGCTTAATGGTTGCCCACTTGCTCCTCCAGCACTGTG
CTGGTAATGTGATTGGTCGCCTCGATCAACTGTACACTGACTGAGAAGGTAGTACAAACA
CTAGCTTGTACTAGAAAAATGTAAAGGTCACTAGCTCATTCATGGACCCGATTTAGTCCG
TGCTAGCGTGCCACCGGCCGACGAAACACCACCGGAAAGGGGTGAAAGGCGCGCGCTGGG
TTTGGTCCTGACAAGATGCTCGCATACGTGCCACGGATGGCTGATTAATTAGCTAATCCA
TAGCATATATTAATTCGCGGCCAATCAAAGCGACCCGAGTGGACAGTATCAAATGATAAT
GCGACAGATATGGGACTATGCCTGTAGCAACAAAATATGGGCGGGCGAAAGCGGCCAGGC
CCTCGCCTCATGCCCTTTACGGGATTGATCAATTAAAGTACTACGAGGCTATGATGTAGG
TGTGCTCTCTTCGAAAATATCTTGTCTCCTACAAGGCTTTTGTGAGTGGATGGGAATAAT
TGGGATCAGTCGTGCTGCCTCCTCGCGTTTGGTTGGTGCCAAGACTCGCTGAACTCGTGC
TCCTTGACCCTCTTTTCAAAAAGAGACGTTTTCTTGTATTTCCTCTGTCTTAAAATAAGT
GTTGTAAATTTATAATTAAATTAGTATAAAATTTATATTAAATTATCCATACTTATTTTA
AGACGGAGTGAATACTATCGACTACCTCCGTTCTAATTTATTAGTCCTCCTCGCATTTTG
AGTTATATTTTAATCATGATTTAATTAATAAAATATAAATTATATATAGAAAAAATATAA
TCATTGACAATCACATTCAAATACAAATCTAATAATATAATTTTTTATGACATGTATTGA
CATTTTGATACTCAAATATATGATCAAACTTTGACACAAACTGCAACAGAGACTAATAAA
CCAGGACGGGGTAACACTCATCTTGTGTTCATGTGGTGTGAGGGCATCTAGCAATCAAAC
TTGGCAAATCTATCCCGTTAAACGCTCACGGACGTGTCCGGGCACCTCAAATCCATACAA
ACTCATGCAACTACGTAAAGGATGCATTACACACATCACCCAGCTACTACATTTGGACAT
TGCCATCGGACTACCAAAAGTTGGCATGTTTAACGTACATGCTAACTAAGGAGAGGATCA
TCCACAGCTGACCTTGCCCTTTCCAGCACCCTTGTTGTCCTTCTTGCAAACCGGTCGAAA
AAACAGTAGGGATCGAGCCGGATGTGCTCATCGTCGGAGCTGTCAGAATCGTCATTGTCC
CCCATCTCCTCCTTGGGGGGGCAGTCCGGCCATGGCATGGACCGTCCCGATTCTGCTCTC
GGGGGAAGGCGCGATGCCGTTTCTTTACAATGCAGATGTCGATGGCTTCCTACTTCACAA
TCGCGTGCACCGTTGCATCAGCCGCCGCGGCCATGTCCGCAGCACGGCGGGCCTCGGCCA
CGCTCATCCTCTTCTTCCCACGGCGGGAACACTAGTCCCGGTAGCACTCATACTCGAGTG
AACCAGTGATGGGGAGATTTGAAAGCTCTCGGGAGGATCGCAATGATTCAGCCCCGGAGG
ATCCGACCGCCCGATGTGCCAACGCAATGGAGTCACGCCGGACAGATGCATGTTTGGGTT
GTGCTTCTTTTTACCAGTCCATGAATGGTCGTCTGCTCGGGCGTATGAGGGACGTTTGAG
GAACCCAACTATAGACGCTCTTAGGGCATCTCCAACACGAACCTCTAAACCGGACAAAAT
ATATGTCCAAGGAAGCATGACACGTCTGCTTAGTGGCACGGGAGTCAACTATCGAACTGG
GTCCACATACATTTGAAATAGGCTTTGAACAAACTGGATGATTTTCATTTAAATTGGACC
AATTCATGAAATTTTCTGCATATCTCATTAAACAAAAGCGTATGTGAAGTTAACCTAGTA
TAAATCTTCACCGACGCATGTTGTTGGTGAACTAAAGAATAGGGACCTTTAGCATCCTAA
CTTGTGCACACATGATGACGAGATGATGTATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTTTCCCTTACACGGAAACTTTAAGGTTT
ATCGAACCANNNNNNNNNNNNNNNNNNNNAAGTAGGTGTCTTCCATCCTGGCGCTA