Contig Data
morexGenes
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Map Locations of contig_1561044 (3988 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1561044

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11421 1 399 bp MLOC_11421.1 Available Available None
MLOC_11420 1 1367 bp MLOC_11420.1 Available Available LOC_Os02g10080.1, FRAME:+1, EVALUE:3e-158, 13102.m01114 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed





CDS Structure of MLOC_11421






CDS Structure of MLOC_11420






Contig Sequence (3988 bp)

>contig_1561044 3988 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGCTGATAGGATCTGTAGCTTTCCATGGTTAAAGATGAGGGGGTATTCCGAAG
CTCGCGTGCCTTAAGATATGTAGATTCGCCGCATGCTGGTTTGTTGGTGATCAGTAATTT
TACCTGAGCACATGAATATTCGCGCATTAAATTGTTGCATTGCTCGATTGGAGCTGGCTA
CTACCTTTTCTTCTCTGGATTCTGCACATTAATACTTACCATGCCCTCGCTCCTTACTCA
ACAATTCGCCCGGAGTTTTGAGGAGGCTCTGGGTACTGGATTCTAGCTCAAGCTGAAAAG
TTACTAGTAATCTATGCTTCGATTAATGCACTATATTGTACAATTAGTCAACAGCGTATT
AATGTCCTTTTATGCATCACGATTAGTTAATCAACAGCTTATTAACTTGGCGCGCATAAT
TAATTTGATTCAACAGAATCGGAGTCATTTCAAACCGGTGTAGGAAGCAAATCGAAGCCA
TGCACCAAATTTTTCAGGTTATAGTCCAACTTAAAATGAACTCCACCTGGTAACATTTAT
TCTGCATACCTGTTATTCTGTTAAAACTTTACTTTTATCTATGAAAGAATGGTTGCTGCT
AACAAATCATTTAAGCAAGATTGTGCGACAGGTTCTCCCTAATCCAAGCTTAAGAACTTC
CACTGGAGTAAAAATGGAATGTGCACGGGTTGTGCAAAATCGCTTCTGAATATGTGAAAG
TGCAAGAACAGTATAAGGACATGTAACTGCTTTTTCAGACGAACAACCAGCCAGTAATAT
CATCATAGAGCATTTACAGCCTCTTATCGAATTGAGAGAAAAGAGGACTGAATATATGAG
TTGGACACCTGAAAGTCTGCCACATATATCCTTCTTGATATATACTATTTATTCTAACAT
TTGGTACATGCATGGATAGTTTTACTGTATGGTTTAAAATTATATGTCCATCAACAGTTG
CCTGTTGAGTCATTGAAGCATCACATGCTTGTGATATTTAACCATGAGGCAGTAACAAAA
TTCGAACTTATGATCCAGAAGAGAGCCTTCCTGAAACAGACGCTCAACAAAGATCAGTAT
CTAAGTACTTTGATGAAGACATATAACAGAGAATGTCAAACTGTTCAATTTTTCTTTTGC
CGAAACACACATGGATAGTTTCTTGTCCTCCAAACTGCCTGTTATTTGGTGATGCAGAAT
GAGCCAACACAAATAAATGATTATCATCAACAAACATTCAAAATGTAGATCGTTTTCACT
GTATATCAGAACATCAGTCACTGTAGAACTTTTCTCCGGTCCATCTGGATTGTAGTCCAC
AATGTATACTTGGTTCAGTAAAGTTTGCCCTAGAATGTTTATTGTTATTCAGATGCTATC
AACACTTGTAATCATATCCATGAGCCTTTTGGCTTATGAATTCTCGTGTCTGAATCCTCC
TAGTCAACATCAGTTGTGCTTAAATGAATTGTTTTGCTAATTAAGTAACTTACCCACATA
TTATTCTCATTGTGCAGTACCGCTGGTTGCCCCTTTGGTGAGGGTTGCCATTTCCTCCAT
TACTTCCCTGGTGGCCACCAGGCTGTTGCAAAGATGAGCAACCTGGGTGGCCAATCATTT
GCACATCCCCAAGGAAGAATGCCTGCAGGATCTGCTGTTCCAAATGGCCCCCCTACACCA
ACTGTCAAGACTAAATTGTGCAACAAGTATAACACTGCAGAGGGATGCAAGTGGGGTGAC
AAGTGCCACTTTGCACATGGCGAGAGGGAGCTCGGCAAGCACACGTTCATCAACAACTCC
ATGCCACCCCATATGGGACCAAGGCCCACCACTCACTTTGGACCTCCGGCAATGCCCAAC
CCTGGCATGTCCACCCCAGCAGGCTTTGGGGCTTCTTCCACAGCCAAGGTCAGCGTCGAC
GCATCCCTCGCAGGTGCCATCATCGGGCGAGGTGGAGTAAACACAAAGCAGATATCCCGA
GTCACCGGGGCCAAGCTGGCCATCCGGGACCACGAATCAAACGAGGCCTTGAAAAACATT
GAGCTCGAGGGCACGTTTGATCAGATCAACAACGCCAGCGCCATGCTAAGGGAGTTGATC
TTCAGGATCAGCGGCGGCACCAACCCCAACGCCCCTCCCTCGGGTGAGAGCCTGGCCGGA
GGGTCTCACCGCGGCGGCGGCGGTGGGCCAGGGAGCAACTTCAAGACCAAGCTGTGCGAC
AACTTCACGAAAGGATCGTGCACGTTTGGCGACAGATGCCACTTTGCCCACGGCGAAAGC
GAGCTGCGCAAGTCGGCTGCCGCGTGAGGTTGATCTACCCACCTGACGTGATCTGTAGCG
ATTAGTCAGTGCAACTCTGAACCATTGAGGGCTGATGATTTATTTTCTGACTGTCCTTGG
GATAATGCCATCGATTTTATGGATTTCATATCTGTCATTACTTGCTTTGAAGGTGCCTGT
GTCAATTTTCCCGCACGTTTTTTTCAGCGTAATTGGACCACACTGAAGGAAGTTATTATT
ATGGCAGTAAAGGATTATTTTGCACTAGTATTATGCCAGCCAATGTTAATGACACTAGAT
AATCCGGTTAAAATTACAGATTTCTGATCCATCAGCTTATGCAATGTACTCCCTCCATCC
ATGAAAAGTATACATATAGACATTTTAGGACAAATTATAAAGTGGAGTAAAAATTATAAA
GGTGTAAGCCACCATCTCTCTCATCTTTAATTACCCAACCCATAATGTGCTAAGTGCATG
TAAAAATTAAGGAGACTATATGTAAAATGTTATTGGTCTTTATTATCATGTGATAAGAGA
GAAGATTTTTTTCTATTTCAAAGTACATTAAAAAAAATGAAAATACGCTTTTTTGTGGAT
AAATTTTAAGACCAAATGTATACTCTTCACCGGACGAAGAGAGTAGTGTACAAAGTGGTC
TCAAAATGCTTAGTAAATCGTTTGAGGCCGGTCCTAGATGACATTATTTCTCCTGCTCAA
AGTGCATTTATTCCTGGGCTTATGATCACTGATAATGCCTTTGTTGCTTCTGAGTGTATT
CATCATACGGTATTGCTATTTTCCAGACATCATACGGTATTCTTTTTTGCCATTATTTTT
GAATTGCATGCGTAATCGCAGCCACGTCCTGTTTCGCTCGCACCCACAAGTTCCGCTTGT
GAATCCAGATTACGACCACGCACGTTACGCTCGTAGACCGCTACTAAAAAAAGAGAAAAT
ATATGGACTTCAGTTGGATTCAAACCCTACTCTTATGGGAGAGATACAAGACGTGATAAC
CACCAAAGCGCATCTCGATTTGTGTTTCATGGATGGTAACTATCTTTTTTAAACCAATGG
ATATCAACTAACCCATTTTTCTATTTATTTTCTCGTGCTCCAAAAGAAACCAGGCTACTC
ATGCATATGCATAGGACACACATGGTACAATTTGCTTAAGGGGGTGTTAGTCCCATCTAA
ACCAAACATAAGGGATTTTTAGGAATTAAAAATGAACATTTGGGAATAAAGAAAGAAGAC
CGCGAGGGAGAGTCTTTTTGAGACTTTTTTCAACAATGCCCCGGTTTTCAGCATGTCATT
TAATGACCTCTAGTCCATTACTAGAGGTAACATGGTCTTTTAGCATGTCATTTAATAATT
TATAGTCCATGTTTAGTCCCCAGAACCAAACAGACAGGGACTTTTTTATAGAAAAGGAGG
CATCGCCCCGGCCTCTACATCGAGTGATGCATGCAACCTTTTATTAAACACGAAACCAGT
CTTAACCAAATACATAGCGGTCTTGAAACAATAAAAGATACAAGGCGTCTATCGTGCTGC
AACCGATAATGAAAATAGGCCTAGATGACTATCCACATATCCTATTAGTATGTCGTCATC
CAAACCGGTTGAAGATACCCTGAGCTACCATCTTCCATCGGACACACCGAGTAACCAAAA
GCTCCCTGGCTTCCGCAGGAGTGAGGAA