Contig Data
morexGenes
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Map Locations of contig_1561034 (6263 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1561034

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11412 8 2198 bp MLOC_11412.2 Available Available LOC_Os04g30490.1, FRAME:+3, EVALUE:0.0, 13104.m02894 protein MATE efflux family protein, putative, expressed





CDS Structure of MLOC_11412






Contig Sequence (6263 bp)

>contig_1561034 6263 assembly3_WGSMorex_rbca.fasta
CTCCGTATATCACACATTATACGAAACCCCCCCCCCCCCCCCCCCCAAGTACCCCGTCCC
GTCTAATCATGCCACTGTTGACTAGATGATTCTCGGCCTTTGACTTCCGCCAGACAGGGT
TTGACCGACGGACATTTTTACCTGGTTGTGATAGGCCAGCCGATAGGTACACTTCGGATC
AAGGTCCGAGCCCAACCCACCGCAAGATTCCCTTTGTGTCTCCCCGACATGGTCGTTTCC
ACCCTGTGTGTGATGGCGGTAGCAACGTCCATGAGGGGGGTCACTCTACGGAACCGTGTG
TCGGGTGCTTGCACGTGCCACCACACTTCCACATGTGTAAGAGGGCTGAGCGCAAGACCT
GAGGGCATTACTACCCCCCCCCCTCCCCAAGTACCCCGTCCCGTCGTCTAACCCTGGCAC
TATTAGCCGGACGGATCTAGGCCTTTGACTTCCACCACATGAGGATTGACACATGGACAT
TTTCACCTGGCTGTGATAGACCAGCCCATAGGTACGCTTCGGATCAAGGTTCCGGCCCAA
CCCATCGCAAGATTCCCTCCGTGTCTCCCCGGCGTGGTCGTTTCCACCATCCGTGTGACG
ACGGCAGCTACATCTGTGAGGGGGGCCACACCACGGAGCCGCGTGTCGGGTGCTTAGCGA
CGTTCATCCTCCTATTGTACGAAGGGGTGTGTGCATCATACAGTTTTCCATCCAGGATTG
GTCTAACCATCCCATGATTTAGCGCATATACACAAAGCTAAGTAGACGATGCATTGTAAA
AACTTTGTGTAGTACATAACTAAATACACTTTTATATTACATGGGCATGGGCTATAGACT
GAAGCTATCTAGATTATTGTACATGCCCTAAGTAAATCAAATTTTAGTTTATGGAAAAAG
ACAAAAAAATGATAATGCCTAGCAATGTCGACGGCATGGCCGTCGGCATAGCTATGCCCC
GGATCGGTGAACGCTTCAGATCAATCACGCGGCACGTGTCGCGGATCGATGACATGGACA
AAATCAGCTATCTCGACGAATCCGTTAGGGTCGTCGGCATATGTTTGACGGTGTCAGACG
GCCGTGAACCACCGGGTCGCCGTGCCCACATATATGCCGACGAAGAGGCTATGCCGACGA
CCATCGTAGGCAAAGAGTACGCAAATAGGGAGGTACGTCGACGGCCTTATGCCGACGGTT
TTCTTTGGATCGTCGGCATACGTTCATATATGTCGACGGAGGCCGTCAACATACTTTAGG
CCGTCGGCAGCGAGCCCGATTCCGATAAAGAGGGAGCAGTCTTTAATGGCGGCAGGCGTC
GGCCTCTCAAGCACGCACAAGAGGGCTCATCTCCCTATGTGTCACAGCTCGGCCCCGGTA
GCGCTGTGAGAAGCAGGACGACGAAGGAGAGAAAGGCGGGGCAAGGAGATACCAACGGCA
CCGCTCCTCTCCATGGGCGCGTGTTGCAGCTGTATATGGGACCGGGCGCGAGGGATTGAA
TACTTTTGTTATTTGATCTAGGATGGTTATGTCAAAAAGGTTGGAGAGCAATATTCAGCA
TGTGTATGTGCAATTTTCTTTGCCAACTTAGCTTTGAGGAGTCCCATCCGTCATAAACAC
ACTTAAACGAGTTAAAACCTTCAATCGGTGCTTTCTGCAAAAGGTTTACCGAAAACACGG
CGATTTATGCAATGGATTACCGGCTTTATGTTTTTTCGCAAACCTAACCGTAAATGTGAT
AATTTTTTGCAATTAACTCCTAGTTATCTTTTTATAATAATATGTGTTTCATTCATATCG
TAAAGATCAAAATACAAGTCATATAAAGACCAACATGATAAAACTAAAAAGACAGCAGAA
CATCTCTGGCCTTGAAATCAACGTCCGAACACTTGACTCCGACACCATCACGTCACCCAT
TAAAGAAAAAATTAATGAATCATCTTCTCATTCGAGCTCGACGCGGCCCTATCTCTCATA
TGCAATTTTACAAACCTTCAAGGTAGTTCATTAAAAATATAATTAAACGAATCAAACTAG
AACAACACCTCGAACACGTAGTTAAACTCTAGATCTCACGTCATAGTATCCCACTACGAT
TAAGATGAGGAAGGAGGATTCTTTTCCGGCCCGTTGCGGACGCGTCGTCCTAGACCCGAG
GGCCCAGGCGTACAAAAGTTGTGGAGCCGCGATGCACCCGCTCCGAATTTGGAGTCTGCT
GATCTACGACACCACTCCATCATCCCCGTAGCCGCCGCCGTCGTGCGCGGTGGCCGCCGC
CTCGACCAGGGACAACTTCTTCTTCTTCTTGTTGGGGCCTTAGTCCCCGGGGCCGCCTCA
ACCGCTGCGCCTGCGGTATGGCCCTTATCCACACCCTTTCCTTACCTTTTCGCTGCATCA
CAGAGGTCTTGCCAGAATTTCTCTTGGATGTCTCATGAGTTGGCTGTATCTATGCGTGGA
GTTCCTTCCTCACAAACTCCAATTTTGTTGTTGACCGTGGCTGATTTCTGATGTTAACCC
GAAATTCAGGAACCCATTCTGGATCTCGTATGAATAAACCACGGGGTGAGTGGTAGACTG
ATACCTTGATCTTGATGACAGTGCATCTTAACAAGTTCCCTTTTATGCATGCGTCATGAA
GCAGGTCGTAGCACGTCAGGGGTCAGATATGACACATGGCCCTGGCGACGAGAGCGGCTC
CAGCTCCGGCCGTGATTGATTTCGTTACCTGTGAGATCACCTACGCTTGTAGCTTTCCAG
CCTTTTGACTATAGTAGTAATAATAGTGCAAACGCGCTGATCGAGCACGTGCTGTTAACT
GTTCCATTCAATCTTGCTCGTCAGATAGTTTATTCTGTCAGATGTCTTGAACTTGGCTGC
CAAGCTGCCTGCCTCCTTTGTCTCACATGAGATTCTTTGCTCCACTTGACTCAAACACGA
TGAAATCGACCGATTCAGGGGGCATTTTCAACTTGGCTGCCAAGCGAGTGCCTCTGTTTC
CTCTTGGTTTCCTTACTGGATTTGTCCTCCAGTGGTAGGCATGTACATTATACAACATTG
ATGAGGTTGATTAGGAGTATAATACAGTAGTATATTCTTCCCCAAACAAGATAAATATAC
CCTCACTTCACTTGCTAACGCCTACCTTCTTCACAAGCCAGAACAAGAGCGTGAGATTTC
AAGTATGTTGCCAACCATGGAGGAGCCCCTTGTTGGGGGCAACGGCAGCACTGACAAGAC
AGGAGCGTCAAAGGAGAGCTTGGTGGTGATTGAGGTCAAGAAGCAGCTGTACCTGGCCGG
GCCTCTCATCGCCGGATGCCTGCTGCAGAACGTCGTGCAGATGATCTCGGTCATGTTTGT
CGGCCATCTCGGTGAGCTCGCTCTCTCGAGTGCCTCCATCGCCACCTCCTTTGCCGGTGT
CACCGGCTTCAGCTTGTTGGTATATATATTATGTCAAATCATCTCCTGCATGCTTTGATC
CTCCTGAATGAACCACTGGCATCAACTTGAATGTTTTTTCTTGTGTCTGTTTCATGATCA
TCTTAGGCCGGCATGGCGAGCAGCTTGGACACGCTGTGTGGGCAAGCCTTCGGGGCAAAG
CAGTACTACCTGCTCGGCATCTACAAGCAGAGGGCGATCCTTGTGCTCACGCTGGTGAGC
GTTGTGGTTGCGGTGGTCTGGGCCTACACCGGGCAGCTCCTCCTGCTCTTCGGCCAAGAC
CCAGAGATCGCCATGGGGGCGGGGAGCTACATCCGGTGGATGATTCCGGCATTGTTCGTG
TACGGGCCGCTGCAGTGTCACGTCCGGTTCCTCCAGACTCAGAACATCGTCCTCCCGGTG
ATGGCGAGCTCGGGCGTGACGGCGCTGAACCACGTGCTCGTGTGCTGGTTGCTCGTGTAC
AAGCTTGGGCTGGGTAACAAGGGGGCTGCCCTGGCCAACGCCATCTCGTACCTGGCCAAC
GTGTCAATCTTGGCTCTCTACATCAGGTTCTCTCCATCCTGCAAGAGCACCTGGACAGGG
GTCTCAAAGGAGGCGTTCCGCGGCATCCTTAGCTTCATGAAGCTTGCCGTGCCATCTGCG
CTCATGGTTTGGTGAGTTTTAGTTTGTACCCCTCCCCTCAGAGTATCTGCATTGCAGGTT
ACAAAAAAAATCGCGTTCCATGTTGGACTGAATCTGATCCTACATGTACGTACTCAGCTT
AGAGTGGTGGTCGTTTGAGCTGCTGGTGCTTCTCTCTGGACTTCTCCCAAATCCTAAGCT
CGAGGCGTCGGTACTGTCCATCAGGTGAGTTGCAGCATTTTCATGGAGTGTTCCACATTC
TGTATGCCCTTTTCTTATGGGAAATGTGGAACTGCTTGCAGCTTAAACACAGGTTCGTTG
GCATTCATGATCCCCTTTGGGCTTGGGGCAGCCATAAGGTACGACTGAACAACTCAGGCT
CATAGCCTTTTGTCATGCCTATATTACAACTTCATGGTATAATCACTGCGGCAATGAAAT
CGTGTATCTTGTGATTGTAGCACCCGCGTCTCAAACGAGCTTGGTGCTGGGCGGCCTGAA
GCTGCCCGCCTGGCCACCCGTGTGATCATGGTTCTGGGTCTCGCGACGGGTGTGTCGCTA
GGACTTATTATGATTTCGGTGCGCAATCTGTGGGGGTATGCCTACAGCAACGAGAAGGAA
GTGGTGGAGTACATTGCTAGAATGATGCCGATTCTTTCCGTGTCCATCATTTTCGACGAC
CTGCAGTGTGTTCTTTCAGGTAAATAAAATACAGACGACGCAGATTCCAAGTAGTTTGCA
GACTGTTTCCTGAATTTCATTTAACTTTAGTCTATCTTCTTGTCTGGTATCATTTCGATG
AACATCATTGATCATGTACTGATTGCAACGTCGTCCACTTGATATTCCAGGTGTTGTTAG
GGGCTGTGGCTTGCAAAAAATTGGTGCATGTGTCAACCTCAGTGCATACTACCTTGTCGG
CATCCCGGCGGCCCTATGCTTTGCCTTTGTCTACCATCTTGGCGGAATGGTATTGATTTA
ACCACCCATACTGTACAGAAAGTTCCAGCTTCACTTGTAGGAGTAGTATTTCCCACTTGA
AGAAACCTCTCAAAACCTATGTATGGGTCTGAACTTCAGGGGCTGTGGTTCGGAATAATC
TGCGGACTAGTCGTCCAGATGATGTTGCTGCTGGCCATTACCATGTGCACCAACTGGGAT
AAAGAGGTGGACAAATCAATCCAAAACTTATAATGTTTCATCTGCTTCTCGGGCGGCGTC
TCGAGTTGTTATAATGTGTGGCTCATTGTCTTCAATTTCTCTTGTGTAGGCTCTCAAGGC
AAAGGACAGGGTTTTCAGTTCGTCCCTGCCTCCAGACATGACGGCGACATGAACATGAGA
CAAAGATGCAGAATTGTTCTTTGGCTAGGAGTCTAGGACCAGGACGCTAGCTCTCGGCAA
AGGAGATAAGGAACTCGTCAAGAATTTGGTTACCGGCTTCGTCTCCATGTCACCGGCATG
ATGCTTCCTCGAAGGAAACGTCAGCCAACGAGTGATCTGTTTTGGTTATTTTTGTAGAAG
ACGTGAGATGATTGGGATGTTTTCACGGGCAAAGTCATGGGCTTGATACGATACAAGGGA
ATAAAGTAAAATATGGTGTGTACTGAAAATCCGCTGTATGGATGCAACATTGAGAATTTG
GTAGATTATTAATTCCTTGATTACAAATATTAGATTGTTTTGTCTATGTGGAAAAACTGG
ATTACAAGGATGCAGCCACTGTTATCATTTACAGTGATTACGTGTGTACTTCGGTGTGTG
TACCAAGGTAAAATTGGTTGCTAACGGCAAAACATTGTACAAACGGACAACCAAACAATG
GCCAGACCCCTCTTTTTGGAGTGAAAGATCGAATATATTCCCCTGTTCCTTCTTATTTTA
ATTGATTGAAACAGGCAAGACCCTATACCAGGGTTATAAAAATTGATTGAAACGGGCAAG
ACCCTATACCAGGGTTATAAAACGGGCAAGACCCTATACCAGGGTTATAAAATTGTGTGA
TGGATGGATATTGTGTGTTTTTGTGTTGTATTGATCTAACCCTTGTAGGGATATATATAT
AGGAGTATACTAGCAAAATGGTCTGTGCGTTGCCACGGAAGAAAAAAAATATAATCTTCA
ATGATGATGACCATATTATGTTCACATATCATCGCTTGATTTAGAAATTTTGTGCACAAA
TGCAAAAAAATGTTTCTTCTTTT