morexGenes - Barley RNA-seq Database

Contig contig_1560930
Source Contig contig_1560930
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560930 (7329 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1560930

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11368	1	257 bp	MLOC_11368.1	Available	Available	None
MLOC_11370	5	5010 bp	MLOC_11370.1	Available	Available	LOC_Os03g28310.1, FRAME:-2, EVALUE:0.0, 13103.m03304 protein dnaJ domain containing protein, expressed
MLOC_11369	1	768 bp	MLOC_11369.1	Available	Available	None
CDS Structure of MLOC_11368

CDS Structure of MLOC_11370

CDS Structure of MLOC_11369

Contig Sequence (7329 bp)

>contig_1560930 7329 assembly3_WGSMorex_rbca.fasta
CGGTGGTGGGGAGGGATTTGAATGGAATGGGTTGGTTGGTTGGTTGGTTGGTTGGTCGGC
TGCGGTCAAACGAGCGGGGCGAGGGGAGCTGCTGGCGGAATGAATGGCGAAGGCGACGGG
GGCTTGGCCGTAGCCGTCGTAGCCGTAGCCTCTCGTCGGCGGCGGCGGGGCGGCCGGATC
GGGGCGGCGTGCAGAGTGGAGTGGAGTCTAATCTAGTGTGAACTCAGTTCCAGTTCCAGT
TCCAGGGTAGTCCAGCCTGGCCCTTTGGCGGGTGTCTCACACAAACACCCCTCAGTTTCT
CCACTTTCGCCAGCCCACCCCGGCCCGGCCCGGCCCGCCAATCAAGCAAGCAAGTACAAA
CGAACAGATGGACCGACCCGATACTTGGTTCAGCCGGGCCGGGTCGATGAACCGTGTGCG
TATTTTGATTGGCTATGATGATGTCGTCAAAGGTCGATGGTTAATTATAAGCAGTGCACA
TTGAACCCCAGGCCCTTCGAACCGAGCTCTGGTAGATCGCTCGACGTATGAGCTTCCGGT
CAGTAGCGTCCGCCCGGTTCGAAACAAGGACAGATGATCAATGTCGTGTGAGAATATAAG
AAACGAAAGGAAGATGATTGCGGCATTGTAGGTCGAGCATGAAGTTGAGCCACCTTCGCA
TTGCGATCTGCGTGCGCCACCTTCGCATCGCGCGCCGGTGTGTCTTTTTGACGGTAGAGA
GTCATGGGAGGGAGGGAAGGGGGTGCCAAGGCGAGATAGGCGGAGGGTGCCCGTGCAAAG
GTTTTCCTCCGTACTTGATAGTCTTTTTCCTCACAGGACCTTTTTGTTTATTTATATCTC
AAAGTCATTGAAAAGAGGAGGACACGGCCCGAGTCATGATTACCGTGAGTTGGCTGGGTT
TTTTTGCATACAAATATACTACTGGTGTACCATGTACCTGCGGCTGAGATGGCGTGGGCA
TGTTTGACCAACGGCTGAGATGCCACGTGATGTGATGTGACAGCCAGATAGAAAGATACA
GCTCTGCCTGCCTGCCAAGCTAGATTCCAGCACTACAGCCACACAGCTCTCACATACATA
CATACCTACTCCACTATACATACATACTCCTACATGCTTTCAAAGCTTCACGGAGAAAAT
TCGATTCAGGATCCAAGATTCGAATGCCCGTCGCAACCGCCGCCGTGATCGATAGATCAT
GACCGCTTCTCTGATGAACCGACACTCCTTCCTGCTGTAATTTTTTCAGAAAACCAAACC
ACCAAGGGGGTAGAAACATGGAAACAATAGCAGCAACCTGGTTGTCTTCAGGTTCCACGG
CCACAATAGTTTGCCACAATAGCACCGAGGAGAGTTCTTCCTCCGGTCCCCGCCGGCATT
GCTTCTTCTGGAACGAAAAAACCGACAGGCGGTCGCCACGGCCTGTACACAGAATAACAA
GCTGTGAGGTCTTTCTTCTTCAATAAAAGGCCCCCAATTTCATTTAAGAAAAACAGACCA
GTGTGTCAACCAACATAACATCCATCTATCTATCTAGGGGGCAACACCGCCCAACACCAA
AACACACACACACGGAACCAACTCCGACAAAACATCAACTGCTACAGCAAAACTGAAAAC
AAACATAGTGAGCAGAGTGTGGCAAACGTCGAGAAGAAACAGTAGGAGTCCGCAACAAAG
GCTACAGAGATGCCTTCTTACGCAGCGGGACATGCAAATCTGTGGCAAGTGCTCCATGAT
AAGCTGTGCATTGCTCCATCAGCAATAACCATGTTATTATTATCTATTATATCACCATCA
TATTTCATATGCATTCAACTGGACTATTGCTGGTTCTGAACCTGATACCAACAGACGGGC
CCGTGCGTGCACCACAGAGCGCGGTGAATCTGGTTCCAGGCCGCCAGCGGAGGCTTCCAT
AAACAGGAAGACACTATCATTATCAGGAGCACAACCACAATAAAACTCTTCCTTTTCACC
CAAAAGGAGAAAAAAATAATGAGAGCATGCGACCATGCTAGAAACATCACGTTTCTTTGG
CCCCATGTGCACACGATAGGAGATTAAGGTTGATCCCTTTGGGCATAACATGGCAAAAAC
TGGTACACTTTTGAGCTGGATGCAATTGTAGACACAAGAAGGATCCATTCGGCACACTTG
GTGCAAAAAAAAAAAAAAGGCTGTTGATGCGTAAACGGTATGTGGAGGCATACCTGAAGA
CGAAACGGATGATGCGCTGCAAAGGACTTTCTTCACATGCCCAGACAATGCTGCCGCTTG
GGGTTCGGTTAGCACCAGGACAAATGAAAATAAACTCTGCAAAGGAAAAGACAAGCTTGG
CACGCAGACAGGAACAAAAGATACACTTCAGCCACAAATGTCAGTATCTTGAGCAACAAA
TACTAGGGCTGTTAATGCTGAACTCCATAGTTTGCCGGTGACAACCTGAAATAGTACGGC
GGGCAACAGTACCCACACGAACCACCCATCATGGTAAGCTGTAACAGCTAGCTGATGGTG
AGCAATGAAACGGATAAAATAGCAAAAGATTCATTCTCATACAGCTACAGAGATATAAAT
GAACTATATTTCTACGTTGCTTAGTAAAGGTCACATCTCTAGAGCAAAGATTAGACCATC
TGGAGTCGAAACGCCACTCCACGGTCCACAGGGCATCCCTATGAAACCCGTTCTAGCTAG
TATCTTGCATGATGATTTGTATGCTTCAAATGGGGAAGACGAACGGTGGGAAACAAATAC
TGTTGGCCGATTTGCATTGCTCATGGTAGACTATTACTAACATGTGAGATAACATATCTA
TATCGGATAATGAGACAGTACAAGAAAAGTTCCTCTTACTAGATAGGCCAAAATGGTAAG
ACCAGCAACAAAGAAAGTACCAGTGTCTATCAGCAATTCCAAGTTGTAGACAAGGTAAAA
CAGCACATATAAGATACTTTTTCTGACATACAAAATGACTGCCGCTTACTCACATCATGA
GCTTCATTGATGAGACGGCAAGACACATGGCATACAAGACAGGAATGGCTAGCCCCAGAC
CAGCCGTTGTACGCAGAGGTAACTGTCAAAGTATAGAAGCTAGGAAACACTACAGAAGCT
AGCTAGTGCCAACAAATGTTTGATTCAAAAGGGCTGGCAGGTCAACAAAGGCATAATGGA
GTCACAGCATCAACCGTCTCAACTGGATTTAGAAGTTCCTTCTGCCTCCTCCGCCGTTTC
TGTGATCCCCTGAAGAAGTTCTTTAGAAATGGCAGCTGGGTCTACCTCATAGCTATCTTT
GGGGACGTTTGGAGCTTCTTCCCCTGACAACTTATAGAAGGGGACCTGATGTGAAAACCG
AAACATCTCCCCTTTTGGAATCCTCTTGATGACGTCCCGGTTCTGGTGACGCTGAAAAAC
TGTTCGAAATCCAGTAACCTTAACCAAGGGAATGACAGAGATTCCTTGATCTTCGTCATA
ATCATCCAGTATCTCAACCAGATCATAGACATGCAGCACATTAGTTGGAGTATCTTCATC
CCATTCAGGGGACCAGTTTTGGTACAAAGCCCAGATATCGCCTTCGCGTGGGTAAACTTT
GACCACCCCACGTGGGCCTTTCTCCCATTTAATCTGGTGAGAGAACATGTTGACCACATC
ACAGATTCGATGTTTGGCAATTCTGAAATCACCACATGTCTTTGTGAAGCCAGAAGAAAC
CCAACTCAATGATCCAAATTCACTATTCGTCTTGGTCTCGAGGTAACTTATCTTGACCTT
AAACGGATTCAAGGAGATAATTTTCTGAATAAATGCGTAAAACCGAGGCATGCCATCATC
ATCGTCGTATGAAGCCCAAATTTGATCACTCTGAAAACGTTCCTCGGTGCGATCCTCATC
AAAATCATGGAAATCAGGATCAGGAACAGTAAAAGACAAAGGGTCCTCATCTCCATTTTC
AGTAGCTGTGCTATTAGCAGAACCATTCTCCTCTGGATCAGCACAATCATCATTATTTGC
AGTAGAATCATCTGATGCTTTACTACTACCCTCAGCATGTTTCTTGCTCGTTTGTCTTGC
AGTAGAATCAACTGTTGCTTTACTACGCTCAACATGTTTCTTGCTCACTGGAACATCAAC
AGTAACTTGGGGTGGCCTACTTCGTATCTCATTTAGCTTCTCCCTCAAATCGCTCTTCAT
CTTGGCAATCAAAATTCTCCGAAGATCTTGCTGAGAAAAAGTCTTAGTTACACTGATCCG
AGTAGGGGGCTTGGGCCTCCATGTAGGTACACCATTAATAATATGAAACTCAAAGCCTCC
AGTGTTGGTTGAAAATGGAATAGTTCCACCTGGCATCCTGGCAAATTGGGCCCATGGACC
TGCGGGAATGGATGAAGAACCACCTCCAGCATCAGTTCTCATCTTCTTTCCAAATGCACT
GCCGCCCATTCCATAGTTCATTGACACATCTGCTGGCCTTTTTAGAGGATTCTGCTTCCT
CTGAAGAGCTTCTTCCCTTCTTGCTACTGCTTGTGCCTCCTCCCTCTCTCTCTTAACTTT
CTCGTATGTCTGATGAACCATATTAGCAGCTTGAGCAGCAGCAGATGATGATGCAGTAGC
ACTAGCTGCACCAGCTGCCCTTGAGAATGGACCCCACTGATAATTCCTCCCAGTGCTTGC
ATCTTGAGGTGCACCACTGACGTTTGAGTTCCGTACTGCATGAACATCTTCAGTCGGTGG
CACCGCTACCTCTTTTGCAAGGAATGGCTCGCGGCAGCTAGGGCAGAGAAGAGTATGATC
TATATACACTTTAAGATATTCAAAATTCATCTTGCATTTGTTGCATGAGGTCCAAAATGT
GGACTTCGTTGCTGGAGGTGGAGCAGGAGCAGGAGCCTGATAGTGAGGAGGCGGGCGTTT
TGGAGGTGGGGGCGGGCGCTGGCGCACTGCAGATGTTGATGACCCTGTCTTTGGCTTGTT
TGCTCTTGGCTGAAAAGGAGGTGATTTGGCTGCGAAATTCTCGAAGCCATTGGCTGCACC
TGGAGTTGTTCTTGTCCTATTTGATTGGGCTGTCCTCTGTTGTAGTACAACTACTTTCCT
TTTTTGATCATACAACAGTCTCTTGGTCTTATCGGATAACACAGTCCATGCCTCTTTAAC
CAACTGGAAAGCACCCTCAGCACCCACTGATTTGTTCTTGTCAGGATGGAGTAGAAGTGC
CAACTTCCTGTACTGCTTCCTCACAGTTTCATCATCTGCCGACGTGTCCACAGAGAGGAT
AGAGTACCAGTCCCTATCACCAGCAACCTTCAGTTCCGAGGTAAGGTAAACATCCAAGGT
GATGATCATCTGCATGATGCCCTCAAGATCCGGAAAGAGAGACTTGGCCTTGAGGGCGAA
TTTCTTGGCCCCCTGCAGGTCCTTGGATTCAAACTTCCTCTCTGCAATTTGCTTCGCCCT
AAGGGCCTCATCCTTGTTGCACTCCATTCCGTCACAGGTCAAGAAGGTACAAACAGCAGT
CACACGCTCACAAAAGTCACAATGTACTCGGAGAAATATCAGACCTCCGAGCCCCACAAT
ATCTTCCACCAATCAGCGTCGAGCAAGTGACCATACAAGAAGCTTCCAAGCCCTGCCAAA
AAGGGAACAAATGTTACCAAATATGATATACAACCAACGGATGAAGAAAATTTGCTTTTA
CAAATACAGCCCTCTCCAGCATGACAGGAATTATAACTACACAAAACTACTATATGACGA
CGCACATAAATGCTCAGGTTAACTGAAGATGCAAAAATGTGGCAAAATTACAACCATCCT
GGTGCCCAATGGGTGACCGAAGCAACACCGCATTAAGGGTACAAGACCAAGTGCAGATTC
AGAAATTTACAGTAACCGTCTTCAGCACACTAATAACTGAAACACTGCCGTGGCACGCAA
TGGACAACACGTCACGGAATGAAGGACCAATTAAAGATACAGAAACATAGCACCAACAAA
ATGAAGGACCAATTGGAAGATACAGAAACATGGTACCGACAAAACCAACGTCAACGTGGC
TGGAATTACAACTACACAGAACTCAAACTTTAACCTAATACGAAACATAGCAAAGTTACT
TGGAGAAATATCAGACCTCCGAGCCCTGCAATATCTTCCAACAATCACCGTCGAGCAAGT
GACCATACAAGAAGCTTCCAGGCCCTGCCCAAAAGGGAACAAATGTTACCAAAAATGGTA
TACAACCAATGGATAAAAATAATCTATTACAAATACAGCCCTCTCCAGCATGTCAGGATT
TATAACTACAGAAACTAGTGCATGAACAATGCACATAAATGCTCAGGATCAAGTGAAGAT
ACAAAATTGCCGTATAATTACAACCATCCTGGAACCAATGGGTGACGCCGCAGCACCGCA
TTAAGGGTGCAAGACCAAGTGCAGATTCAGAAATTTACAGTAACCACCTTCAGCGGACAT
AACTGTAAATGCGCATAACTGAAACACTCCCGTAACACACGCAACGGACAACACTTCACG
TCATGAAGGACCAATTGAATTGAAAGATACAGAACATCGTACCGACAAAACGAAGGACCA
ATCAAAAGATATACAGACAGGGTACCGACAAAACCGTCCTCGGCGCGGCGCCGCGTGGCT
GGAATCACAAGTACATGGAGCTCAAACGTTGCGCGCGACCCGCGAAACAGCATAATTCAT
TCGCCGGCATGATTCAAACCCAGAACCTACCCTAGCTAGGGCGAATCCGCCGAGAGAGCG
CGGGGATCCGGACAGGGCTGGCTTGATGCAGGGCATGGGGAATTCGGTCCAACTGACAGA
AACTGATGTTTTGTGCAAGAATTTGTTGAGGACAGCAGAACACATGGCAACCCGGAGCAT
CAGTTGAACTGAGCCCACCCAGCCATCGCTGAAACAAACTGGTATGACTACTCTACGGCG
GAGCGACGGATTGCTTTGGTTTTCGGAAAACGGGGAACTTTTTTTTTTGTTTGTTCAGAG
CGGAGCGGAGCAGGACCGGAGCGGCAGCCGGAGCAGCAGACGGGGGCGGATCTAGGCGGC
GGGCCGGGCGTGCGGGATTCGAGGAGGCTGGTCCGGGACTACCAAGCAACCAGCCGCCGG
AGGAGCGGAAGCTGGGCGTGCCTCGGAAACCAATGCCCGAAATTGAGGGGCGGCGCCGCT
GAAGCTCGGCGGCAGTTCGGGGGTGGAGTTCCAGCGCGGGGAGGGAGGGACGGAGGGGGG
CAGGGGGGGGGGGGGGGGGAGACGGCGGGGGAGGGGGGGGCGGGAGAGGGGGGGGGGGGG
GGGACACGG