morexGenes - Barley RNA-seq Database

Contig contig_1560890
Source Contig contig_1560890
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560890 (7108 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1560890

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11346	1	656 bp	MLOC_11346.1	Available	Available	None
MLOC_11345	4	1941 bp	MLOC_11345.4	Available	Available	LOC_Os03g63270.1, FRAME:+2, EVALUE:0.0, 13103.m07013 protein regulatory protein, putative, expressed
CDS Structure of MLOC_11346

CDS Structure of MLOC_11345

Contig Sequence (7108 bp)

>contig_1560890 7108 assembly3_WGSMorex_rbca.fasta
CTTATAAGTTGGGTCTGTTTGGAAAATAAATCACTTTTTGTACTTTTCAACTTATAAGTT
GATGACTTATTTGGAACCAAACAGAGCAGTTGACAGCAAGAGGAGAGGCGAGCCCACCCA
CGCGATGTTCATATTACACAACCAAAGCCGTGACTTTGTCATAAACCTGCTCCATCAACG
CCCACACAACACAACACACGCAGAGAAATAAGAGAGGAGAAGACATCACCGGCTCCGGCT
CGGGTAATCAGGCAGGCAGGCAGGCTCAATCAGTGGGAATAAGATGATCTGTCGCCTCTA
AGCCGCGCGCCACGACGCGCCATCCTCCACTCCCTCCGTCATCTTCTTCCTCCCACCCTC
CCTCTTAAAAGCCTCCGCTCCCTCGCTTGCTCCTTCTTCAATCCCTTCCTGCCCCTGCCC
GGCCACCACCACCACCACCCAAGAGGGAGAGGCATCCACTCCCTGCCGTGCCAATTCCCA
GCCGCATCGCTATCTATCTATCTATCTACCTCCACAGCAAGCATCCCTCGGCCGGATCAA
ACCATCTATTATCTCAAGAGCGCTCTGCACGCCGGTGGCGCAACCAGCAGACGAAGGGAG
AGGTGTTCAGTCGGTCAGGTAGATGTTGGGGGGCGGGAAGATGAAGGGGGACGCGGGGGG
CGGCGGCGGGAGCAGCAGCATTAGCCCGATGGTGTCCTTCGTGCTGGGCGCCGCCATGGC
CACCGTCTGCGTCCTCTTCTTCATGTCCGCCAGCCCCGGCCGAAGCCTCGTCGACGTCGT
CGCTTGGAGCCACAACAACGGCACCGCCGCCCAGCACCACCACCTGCGCTCCGTCGCCGA
CCATGCCTCCGACGCAGCAGACAATCTCAGCGCCGTCGTGGCCGCTCCGGCGCCCGCCCC
AGTCCAGGTACACTCGCGCGCTCGCACCCTTCTCATCAGCTGGCAAATTTGGTGCCTACC
TCTTGATTCTTCTCGCACCCTTCTCATCTAGCTGTTGAGTTTGAGCGAGGCCCTGCCCAA
ATTAACTCCGGATTGATTGATTAGTTATGACCGTTCTCCCAGGATCACCACTGTAGGTAA
TAGGATCATACGGAGTACTACAGTACATACTTCTCCCCTCCGCGCACGTCTCCGGCGTTC
CCACAGCCAGCCGATCGTTGGTCAAATGCACGTAGCACTAGCAGCTCAAGATATTTCCAC
ATAATTCCAACTATTTTCCACCCCCATTAATAATTTCCAAAACACTAGTCTTAGAAAGGA
ACAAGAGCAACTGGCCAAGGTGGTGGCGCCATGCCATGCAAGCCAGTTACATGTACATAT
TCGGTGGAGGGATAATCTGGGATACTAAAAACCAGAGACGCCGTTTTCATGCTAACAATA
TAATTAAGATTGAAGACAAGAGCATCCTCTTTTTGAATGAGTTGCGTGAGGCGATGGCGA
CCGGGTAACCAAAAGGAAAGGGTTTGCGCCGTGTGTTGATCGAGTCCCAAAAGCGGTGGT
GGTGGTGGAGCGGCGAGCGAGACCAGCTCACGTCTCGAGGTCGACGAATGTATGTGGACG
TCTGCTTTCTCCGCCCCCCTCTCTGGTCTCTGCTCACCTCCAACAACCGCCCCCTCCTTT
TCTTTCCATCCTCCCCATGTCCATGTATGTATTTCTAGCACTCTCGTCGTAGGTGTCATT
TGTTGTCCTCATTAAGTCATTATCAACACTAATGACTCACCACTCTCGTAGCATCTCCAC
ATGATGAACAAAAGATAATCTTGCTACACGAGTCGTCGGTCCATCACCGTTGCAGCCTCT
TCACATGATGACAAGAAAGGCCATTACATGAGTCATCACTGTGCACGTCAGTAGCTGCTT
TGAGCATTCCCTGAAGACACACGACATGTAACTACGCTATGCTGTCGGCATGGGCGCCAC
GACGGCGCACGCGTCCGCCGGGCGGTAGCCGTACACGTGGCGTCTGAAACGGCTGGTAGT
TCTGTGGCTGATCGGAGCACGGCCGTTGACGTGGGCCCCGCTCCCCCATTGCCAGGCCGC
GTTCGTGTATGGCGGCATGGGCCCTCTCTCTCACATACAAAATCTATTTTCGTGCTGGGA
GTACATGCTTCCATGTGACCGTCCATCATTAGGCCGCACATGTGCCGGCCAGTCCATGGA
GAAAAAACCGTTCTTTTTTATAACTTATATACCACTCCCTCCGTTTCTAAATATAAGACC
TTTTAGAGATTATATTATAAACTACATACAAATGTACATAGACATATTCTAGAGTGTAGA
TTCACTCATTTTGTTCCGTATGTAACTTTCTAATAAAATCTGTACAAGGTCATATATTTT
GGAACGGAGGAGTACATGTTTAATTTGCTAGCTTAAGCTGGCACCGGCCGGCATGCATGG
TCGTCAGGCGTGCATTGATTTGCCCGCGCGTCCGAATCGGTCCATGCATAAATGTGCACA
GCTCTACGAACTTAATTGCTTTGTCAACTTACGATTCAATGTTGGTACTCACGGTGGTGC
AGGCGTCGCCGTACGGTGACCTGGAGGAGGTGCTGGCGCGGGCGGCGACGGCGGACCGGA
CGGTGATCATGACGCAGATCAACGCGGCCTGGACCAAGCCGGGCTCCCTGCTCGACCTCT
TCTTCGAGAGCTTCCGGACGGGGGAGGGCGGCGTGGCGCGGCTGCTCGACCACCTCGTCA
TCGTCACCATGGACCCGGCGGCGTACGCCGGGTGCCAGCTCGTGCACCGGCACTGCTACT
TCCTCAGGACCACCGGCGTCGACTACCGCGGCGAGAAGTTCTTCATGAGCAAGGACTACC
TCGAGATGATGTGGGGCCGCAACAAGTTCCAGCAGACCATCCTTGAGCTCGGATACAACT
TCCTCTTCACGGTACGCCACTGCTTATTTATCTGTATGTACAGTATGTTGTACGTACCTT
CATGCATGTTACGTACTTTCGGTCGATGATCACAGTTAGTTGAGATGCACGTACATACAG
TTGTGACGATCTAGTTGCTTAGCTATAGGTTGGTTACGTGGTTGTTGGTGTGTTGCACGT
TGGATCGGTGGCTGGACCTGTACGGGGTTGGCCGGTCGTGCTCGGTTGAATTGTCCAGAG
TCTAGTCCACCGGAGTGGGCTAAGCTACTGTTCTCGTGTGGACTTTGACGATGGTGATCG
ATGCATGTTGCACGCTAGGCAGCCATTAGATTCTACTAGTACCACATACGGATCAATCAT
GCATGTGGGCCGGCGGCGGGTCGGAACTTGTGGTTTGTCTCCTCCGGCCGACTGAAACAT
TCATACGAATATAAAAACACAGTACAATCCATCTTGCTGTCGATCTCCATTGCTAACATA
TGTATGCTGCAAAATGCTATAAATTAATGGTGGCAATGCAGGACGTGGACGTGATGTGGT
TCCGTGACCCGTTCAAGCACATCTCCATGGGGGCGGACATCGCCATCTCCAGCGACGTCT
TCATCGGGGACCCCTACAGCCTCGGCAACTTCCCCAACGGCGGCTTCCTCTTCGTGCGAT
CATGCAACAAGACCATCGAGTTCTACCGGCACTGGCAGGCCGGACGGTACCGCTTCTTCG
GCAAGCACGAACAGGACGTGTTCAACCTCATCAAGCACGAGATGACGGACCGCCTCGGCG
TCGCCATCCAGTTCCTCGACACCACCTACATCAGCGGCTTCTGTCAGCTCAGCAGGGACC
TCAACAAGATCTGCACGCTGCATGCGAATTGCTGCGTTGGGCTTGGGGCCAAGCTGCATG
ATTTGAGGAATGTGCTGGATGTGTGGAGGAACTACACGGCGGCGCCGGTGACCGACAAGA
GGGCCGGCAAGTTCCAGTGGAAGGTACCCGGGATATGCATCCACTGATGCAACTGCTGTT
GGTTGGATGAGTTGCATGCATGGTTCCATGCATTTGGTTGCCCATTCTTTCTCTTCTTCT
TGCTTTGCCTTCTCCTTTTCTCGTGGAAAGAGATGGGAGGGGATTGAGAGGGGTACGTAG
CATCGATTCATTTTGTGGAATTAATTCAGCTAGATGATTAGTAAGTTATTATATATGTAT
GTACACAAATATACACAGAGCGGTAGTACTCCAGTGTGCGTGCAGCACATGCATGTATCC
TGGTCTTGGCCGAATCTCCATGGCCTGTAATTAATTAAAGATGGATGGTTAAAGCAGTAG
GCTGCTTATGCAGCACAAGTGTTGTTTGTTTGTAAAAGAAAATGTGTGTTGTCTTCTATG
TGACACGTACACGAATGCAAGCATAGGCATAGACAGATGCACTAGTAAAAAATAGAGCTT
TCATCCTAGCCCTGATTAAGCAATAGCCTTGATCCACGTGTGGGGGAACTACACGGCGGC
GCCGGTGCCGGACAAGAGGGCCGACAAGTTTCAGTGGAAGGTGCCCGGGATATGCATCCA
CTGATTCTACTCATGGATGCTTCCATACATTTGGTTGCCCATTCTTTCTATTCTTCTTGC
TTTGTCTTCTCCTTCTCGTTCTCCTTCTCGTGGAAAGAGAGGAAGGGGATTGAGAGGGGT
AGCATCGATTCATTTTGTGAAATCAATTCAGCTAGATGAATACAAATATACACAGTAGTA
GTTCTCCAGTGTGCGTGCAGCACCTGCATGCATGTATCCTGGTCCTGGCCGAATCTCCCT
GGCCTGTAATTGAGCTTTCGACCGCAGGCTACTGCGCCTTGCCATGGATTGACCAGAACC
GGACCACACATCCTCGATAATGCCTCCACGCCGTATGCTGGCATCAGTTCCTCCTCTAGC
CAGTCAAATCTCTCCCATCGATGGTTCACCGGCAAAGACGAGCCCGCCCGTTGCACGGGC
ACGATGCTGCCCCACAGATCGTCGGCTCACCGTTACCGGTAATAAAGTGCGACCACTGCC
TGTTGCAGGTGGTGCTCCGAATGGGTGTTTTCAAGTGCAAAATATAGGATATGTGCTTGT
TTTGATTTGGTTGTTCACCGGATCAGGCGCAATTTTGGTAGCTCATAGTTTGTTCATATT
TGTGTGTAGGAAGGATGCAAGTTTTGGTATTGGGAAGAATAATACATTGATTTATTGATA
GCACGAAATTTGGTAGATGTTCGTGCACTCCTTGCTAGAATTAATACTAGAGATGAGACT
AGCCAAGAGACTAAAGAGGAAACAACAATTAATACTAGAGATGAGACTAGACAAGAGACT
AAAGAGGAAACAACACCTAATTTTTTAAAATCAAAGAAGAAAGAAGTGTGCAAGCTCGAG
AATTCAGACATCAACAATCAAGAAATAGAGAAGATATTGATCCAACTAGTAGGAGCAGTT
ATTGAAGTTGGATATCTTTTAAAATGTATAATTATGGTTCTTTTTTTTGTCTTGCTCTCG
CAACAAAGAATTGGTGAATTAAGCACTCCAATGTATCAAAATGTTGTTGAATGAAATAAA
GTGGAAAAAGAAATGTGTTTCGCTCGTCAAAAATGAAATGCAAATGATTTTTTTACTCCT
TTCAATTAGTAGAGTAAATATACTCCACTATTTTTTACTCTACTAGATACTCTACTATTT
TTAGGGATCAGTTAGAAATGGCCTTAGTAGGAAAAGATTCCATTTAAAACAAAACTTTTC
TTTAGGGATTTGATAATGAGAGCTAGTGTTCTTTGATTGAGAGAAAACAAAAATCACTCC
CACAAAATTTGAATAGTTATTTTTTAGCAAACAACATGGAAGTATGTATTCCTCGATAAT
GTTCAGAGGTTTAGGGTCCCCGTAAAAATGAGAGAAGGTATATGGCCAAATGGGCTAGGA
AGCCTAAAACACATTTTGCGTAGTAAAAGGGGCCGTACTAATGGGACACAAGTTTTGTGC
TATGTGTATGAAAAAGACAATCCATGTTTTGTCTTTGGTAGTTTTAAATAGCGAATATAG
CATTCGCTATTGACCGCTATCACTCAAATTAAATGTCATTACTTTTTTCATGTTCTAGTG
ATATAAACAAGAATCTAGTGTTTTTATAAATCCGCTACGTACAGACATAGCGCCCGCAAT
ATCAGCTGCCATCCGCATTCCGCTACGCGGAATCCAATCCGCTACCAGCCCGCTATCCGC
TATTTAAAACCATGCAGTCAAGGTGGTGCATACTTTCCCTAAAAAAGCCGGTTCATACTT
ATGTCAAGGAAATACACAATCTCTTGTGAATCAAAATGACTGTCTCACAAAAAAAAATCT
TACATTCTGTTTGTTTCGTGAAATATTTTTTAATGTTGCGCGCTCGCACTACACGCTCAC
TCTGAGAGGCAATCTTATGTATTCAGTTTTGGAAATCTAACATTCCAACTTTTTTTTTCT
CTCTATGTTGTCTCTTCCATTTTCACTGATTTTCTTTAGATTTTTCTATGTTATTTTGAT
ATTCATTTTATTGTTTCCTTATTTTAAATCGTTAAGTATTCTGTAGAAATCAATGATTTT
TCTAAATTCATGATCATATCTAGAATTCATGACACCTTCAAATTGTATGAATTCATGAAC
ATATATAGTATTTTTTTTCTTCCATTATTGTCAATGTAAAGATGATATTAAATATTAATA
CATGATGTATTCTGATATAATTATAATGCATGTTAATGCAAAATATATTTTGATATGCAT
CTAACTTTTTTTTGTTAAATTGGTTCTTCCTTAGAACAAAAATAAGAATATGCACAAAAT
TGTTTTCCTTGGTGGGTTACATATGTGATTTCCATATTATAATGTATTGGTATATAGTTG
CATCAATCTTGATCTTGGTGGGTTAAAAGATATATGCAACTAACAAATCTCTTCCTAGAG
GTTGAAGGGATTCCTGCAAGTAAAATATTTCTTTCCTACGATAGAACAAACAAATCCAAG
ATACGCAATGAGTGGGAAAGATTCTACATATCCTTGTAGAACACGTGGGTTTAGCAATCT
AATGATCGTGGGTGATGTAGTCGTACTTTCGTTGGATCAATCCGATGTAGCACCGCACGA
ACAATGATTGTGAATTGCCCACAAATGTAGCTTGATGTCGTCTCCTCCTTATTGATCCAG
CAAGCGAGGTGGGGGGGGGGGGGGGGGG