morexGenes - Barley RNA-seq Database

Contig contig_1560752

Source Contig contig_1560752

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1560752 (8160 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_1560752

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11287	2	1658 bp	MLOC_11287.2	Available	Available	LOC_Os05g45420.3, FRAME:-2, EVALUE:0.0, 13105.m04826 protein CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MLOC_11286	4	1999 bp	MLOC_11286.1	Available	Available	LOC_Os05g45410.1, FRAME:+2, EVALUE:1e-154, 13105.m04823 protein HSF-type DNA-binding domain containing protein, expressed

CDS Structure of MLOC_11287

CDS Structure of MLOC_11286

Contig Sequence (8160 bp)

>contig_1560752 8160 assembly3_WGSMorex_rbca.fasta
AGACAATGAAGAAGAAGGAGGTGAAGAACAACTGGCATCAGATGAGTCCGCTGATGGTCT
TGATCGGGTCATTTCTGATGCAACGACAAAATGCGATACAGACAAGGAAAAGTTGAAGTT
GGAGGCATGCTAAAAAATCATAAAAATTTGTTGTATCCAAATTACGAAGATGGCAGCACA
AAGCTCGGTACCACACTGGAACTGTTGAAATGAAAGACAGAAACTGGTTTATTTGACAAG
GGATTTAAGAAGGTACTGAAAATCTTGTCGACACGGTCAACAGGCATCAGATAGCACAGA
TTGTACGATGACACTAAGTGCTATCGGCGATCCGAAGGGCGTCGCACGCGCAGTTGAGAC
CAGTATAGTGTTCTAGTTTCAATACAACCCCACAATAAGTTGGTGAGTTTCTAGATGCTC
CGATACAGCTTGCGTATACATACGCAGGGGGAGCGTACGCACAGGTCGCAGTCACACTAC
AGGATAATGTGGAAACAAGACAAGAGTTTCCCGTGCAGATACGGGGTGAAATCGCCAAGA
AAATCAAGTGCTGGTACTATCTCTGTCCAAGTATATAAAGCATGCACGTAGTTTTAAGTT
GTCAATTTAATTAGCTAAATATATATTACATACAATAAAAATTACATATTTAGAAATTAC
ACCCCATATAAATCTAATGACATATTATTTATTACATATAATACATAATTAAGTAGTTAA
ATTAATGACATAGAACTACGCGCATGTCCTATACATCCGGACGGAGGGAGTACATACATG
CACCTGGCTAGCAGGGCCGGCCGTGGTGTATGGGGGAGGGGCGACGGCCTAGGGCCCAGC
CCGGGAGGGGGGGCCTGTAAGATAACTAGTATATAATACAGCCCAACAAAAAATAGGTAA
GAAACAAATTATACAAGAGAGAAGAGAAGAGGTGGGCTAGGCCCATAGCTAGGTAGCGAT
CGCGATGCGTCACCCCAGTCAGCCGGCCGCTCGTTCCACTTCTCTGAATCTGAAATAAAT
CAATTGAAGATCTAGTCGGTTTGTTTTCGTGACTTCATCTTCTTCTCGGTCGTTCAGCAC
CTCGGTCGCGGCTGGTTGTCGCCGCTGCATGCGCCGGCAATACAATACGTATCACAGTAC
GTATCCATCCATCTACATGTTCCTGTTCCATTCCCCGATTCCATTCAAAGCCTAATTTCA
GTAGTTTCTTTGATTCTTTAGTACGTATTCAACCATTCATTTATGATCCATCCATCCTAA
ATTATGGTCGTGTTGTGTAGATGTCTAGGGTTTCAATCATCCGGTGTATAAATTTTTAAT
TATTTGTATTCTTTTTTCTTCATAATTTTCGGATATTAGCCTGTCATGTTGTCTAAGAAG
AAGCATTTGTTGGGTGCTGATAAAAGAAGAAAAAATGATCTGAAACATTCAGGCCATGTC
ATCGAGTTCGCCTAGGGCCTCCCGAAACATAGGGCCAGACCTGCTAGCTAGCTACATGTC
GATGCGCACGCAAGGACTCTACTTCCTTCCACCATGACCATTTCCCCAAGAAAATCAAGC
CCATGCACTCTACCTAGCTAGATGGATGTCCATGCACGCGCACGCAAGGACTCCGCTTCC
ACATCTAAGACGACGCACAAGACAGTTGCGGCGATTTGATTCCTGTGGACAGGCAGAGAA
CGGTACACATGGATGGATTGCGGTCTTGCGGAGCACACACGCTCGCCACCTGCGGCAGGG
AAAGGCTAGCTGTGGAAAATTAAACGTCGCTGTTGGCAGATCACCGCGGTGATCTTTTCC
ACGCACGCGCCGGCGCATGCATGCCGGTGAAACTTCCCGCACGCTAATTAACGATCGCCG
GTAGATCGCGTCCACACGGGCGCTGCATGCGGAGACTCGTTGACTAGCTTGGTTGGAATT
TCTACGTGTGGTTTTTTTTTCTTCCTCTACTCTACGTGTTCTTCTTCATGTGCCGCTGTA
CGAACGAGTAAGTATAGTTTCGTGCAGTGCAAGCCAGGCCATGCAGACTAGTAGTATTCC
AGCAGGGCCGTCCGCTTCATCTTGAGCGGTTCATGGACCGCACGTAGGATTCCCGTACGT
GTGTCCAGCACTCCAGCTAGCTTAGATAGCTAGTCCTGCTTGACGTGGACTCCAACCGTC
GTTGTCGTGAGAGCATCTGAGGGAAACAACACTCGCTTGCCCGCTGTGTCCAAGGGATCG
ATCAACCGCGATCTAGTATTCCGGTCGCCGGACGAGTGGAAGCGGAATCGTGTGCGCTGA
CTCCGACGACCGGTTCGCATCTAGAAGAGGGACACGCCACGGAGTACGGCTGCGCCATGC
GACGCTCAGTCAAACGTCACATGCAACGACCAGCCCGTAAGATGAGCGCAACCACGTCCA
CGTCCACGTCCACGTCGCGCGACGACGGCCGCCCTATAAATGCCGCCTTCGCGGCACTTG
CACCGGTGGCGCCGCCCGCCTTTTCCACCCCGGTCCCTCCTCTCTCCTACCTCCGGATCC
GCCGCCTCCACCATCTTTTCCCTCCGGAACCGCCTCGTAGCTAGAGCTTACCCCAGTCGA
CGTCACCACCGGCCGGAACGGAAGGACCTCGCCGGTGTCTTCGCCGCAGGTGAGCCGGAG
TTCTCCTCCCTTTCTCCCGTCAACTGTTTCCCACCCTTGCTTGTACGGCTACGCTTGCTT
AACCGGCCGTGTTGCTTCCGCCCGTGCTTGCAGAGCAAGCCGATCCGATCCACGCCAAGT
CGCTGTCTTTGCCCACTTGGTGACAGAGAATTTTCCGCCGCACGCAGCCTGATTCATGTG
AACAAAGAGCTGCACCGAATCGAATCCAATCCGGTTGAAGACTTTCTCGCCGGCCGACCG
ACGGACGGGCATGGAGATGGAGGGGGGCTCGCAGGGCGCCTCGCCGGCGCCGTTCCTGAT
CAAGACCTACGAGATGGTGGAGGACCCGGCGACCAGCCGCGTGGTGTCGTGGGGCCCCGG
CGGCGCCAGCTTCGTGGTGTGGAACCCGCCCGACTTCTCCCGGGACCTGCTGCCCAAGTA
CTTCAAGCACAACAACTTCTCCAGCTTCATCAGGCAGCTCAACACCTACGTGAGTTCCAT
TTTCATCCACAGCTTTCATTTCCAAAATCCAGTTCTAGCATGAAGTTTCTTCCTGCTTGG
TTCGTTCATACGCAACTTCTCCACATGATAGGCATCCATGGTATCGCTAGATAATGTTTT
TGTGATGTCTTGCTGACGGCTGGTTTCATGTGCCATCTCGCAGGGTTTTCGGAAGATCGA
CCCAGAGCGATGGGAGTTCGCCAACGACGACTTCATCAGGGGACACATGCACCTCCTGAA
GAACATCCACCGGCGCAAGCCGGTGCACAGCCACTCGCTGCAGAACCAGGTGAACGGGCC
GCTGGCGGAGTCCGAAAGGCGCGAGTATGAAGACGAGATCAGCCGGCTCAAGCACGAGAA
CAGCCTGCTCGTGGCAGAGCTCCAGAAGCAGGCTCACCAGCAGTGCGGGATTGGCTGGCT
AATGCAGTCCCTGGAGGACAGGCTGATGGTGATGGAGCAGCGGCAGACAGACGTCGTGTC
CTCTGTGCGTGACATCCTGCAGAGGAGACGGGGTGCTCATCATCCAGGGCAACAAACCAT
GCTGGAACTGGAGCCAACTGACCGTTTCAGCAAGAAGAGGAGGGTCCCCAAGATCGACCT
CTTCGTCGAGGAGCAACGGGTGCCGTATCCGCGGGCGATTGGCGACGAAACACCGGGCAT
GATCCAGGTGAACGCCGAGCCCTTTGAGAAGATGGAGATGGCCCTGGTTTCCTTGGAGAA
GCTCGTCCAGAGGGCTGCTGCCGCTACACCTACACCCAGCACTGATGATCCAGCTCTTGG
AGATCTGCAGGCAGCACCAATGGAGGCTGGGGTAAACCTTGAGCTCTCTCCGCCCAACAT
TAGGCATGTCCATTCACCTCCAGAGCTAGCAGTAGCAGAGTCTCCAGGCTATGCTGTGCA
GAGTCCAATGCTACTATTCCCAGATATTCAACAAGACAAGCACAAGACCATGTCCGAAGC
CGATCTGAGCTCTGAGGCCAGCACCACAGACACTTCACAGGACGAGACGACCGCCGAGAC
CGGAGTTCCCCGTGAACCGGCCGTGGCGGCGAACGATCTCTTCTGGGAGCGGTTCCTCGT
GGACACGCCCAAGCCGCAGTGCGGCTATGCCTTCCAGGAAAGCCATGAATCAAAGGACGA
TGTAAAGATCGGCATAGACTGCAACTGGTATGGTCACCGGGACAATGTTGATCAGATCAC
TCAGCAAATGGGACACCTCGCTTCTGCTCAGAAGACCTGATGGCTGGCCTACCATTTCCA
CTGATGTATGGTCCGTCTGTAAATTATAGTTTAGCATGTATTACATGTCCACATACTCTA
TAGGAATTTTCGTTCTAGATGCATTTGTATATATAGTTCTTCGTCACTGTACAGCTAGTC
GCGATGATATAATTCTGTTGCCCAGATTTGTTGTGTGTACGCTTCGTTCCTGCTGAAATT
TCTCTCTGACTTGTTGCGGCGGTCTGGTGAGTGATCCGAGTAGCCTCTAATTAACAAACT
TGTGTTTTTGTTGCAGCCAAATCATAAGCTTTGGAAAACAAAAATCATGCGTTGAAAAGA
ACGTAACTCGGCTTTTCCTAAATGATGTCACAAGATTCTAGAATGCCGCCTTCTCTGACT
TGTAACTCAAAAGGACTCGTGTTACCATTTAGAGCTACAGGTTGCCTTGATTAAAGTGTT
AAAATCACCATCTAAAACTCTAACAAACTGTTGAACTCATCCAGAAGCAATCTATGGCTA
TATCCAGAAGCAGGTTGGGGTGAAGAGTTCATGTCAACATCACAACTTGAGTTGTAACAA
GGGAGGTTATTCGGAGGCCGGCATTATGCCAGTAAAGAACATTACCAAGCCAAAAACGTC
CAAGGACTAAATATAGGTCTACAAGCGTCATAGAACACCATTGGTGACAGGCGGACGAAG
GAATAGGTTGCCTCTTGCCCGTCACCTCTGGTTTAGTAAATAAGTCCTGAACCATCAAAA
CAAAACCACGTGGTTCTCTAGCGTCTACATACCCCAGGAGTAGATTCTACTGGAGGATTA
TGATAGCTATGTACACCTTGACTGTAACTTCGCACTCTGCAGGAAGCTGCGGGGCTTTGC
AGTTGGGAAGTCACCATCTTCAGGATCAAAGGACTCTCAGCTGGGTTAGAAAGGCAGAAC
ACAGGTCCAGAAAGAGGAGCTGTGGTCCACTAACCCTTTGCAAGTCGAGAAGATACTTAT
CATCCCTTGTTTTGTACAGCTGCAAAGAGCACAAGTGTATCAGCGTCAGGCACATCCTCG
GAGAAGTAACTTTATGCAAGCAAAATAGAAGCATTATATGAACGAAAATAAGACCCATTA
TGAACATAGTCAACATACCCCGTCCTTACCTGAATATGATAACTGTTTTACATAATCTTG
CATGCAAAAGCACTTTGCTTACTCATCACACAAAGAGTAAGGGAACATGTAAATGTTGAG
GCTTATGCATTAGATTGTTCACGGAACTACATGGCAAATGTGCAAATCAGGACAAGCTCC
TAAACTAAGGGCAGATGGTTAAGATTAGGAGGGTACCTGAATTTCAAACTTCACGATGTG
GGTTGATTTGTCACCGAGGCCATCAGCTTCAATTATAGCAGACTCCACACCGAATCCATT
GTTGTTATGCATCATATTCTCAAAAAAGCCAGGACTCCACCTGCACTTCATGTTATAGTG
CCCAATCTTCTTCCAGCAAACATTTAGCTCTTGCAGAGCTTTAAGCACTTCAGTTATGAT
TTCTCGTGGATGCGCTCGAGACTGTCAAATATCATGAATTAGAATAATTTAAGCATTTCA
ATTTCAGTTATAGATGAACTTTATCCAAAGTTACCTGAAGACCGAGAGCCCATTTCCTCT
CAGCTGCAAAATGTTGCCTCAAGCCAAACCCGGGAGAACCATACTGCCTAGCTTCAGAAG
CTGAACTTGGTGTTTCAGGTGAAATTTGGGAGAAAGATGAGTCCTGCAGAACACAGAAAG
CACAGCAGTAAATCAGTAGCAGTACAAGTACAAGAGCGTTTGAAATCTACAAGGCACAAG
CTATACTAATGAGAGACAAACTCCAACAGACCATTGACTCTTGATACTCGGCTCCAAGAT
AGCCACTGGTTGTACGAAGTTTATTGTCCAAGAGTAAATAATATGCAACTGTCGCCTGCA
CAAGTAGAATTTAGTAATGGTTCCATTAAGAACAACCAAAAAGAGCAGAGTAATGTAATA
CCTCATTTTGCAATCTCTTTTGAAGAGATTCAGTTAGCTGATTCTTGTCAAATCCCATTT
TGATGACATCATTCAGAGTTTCATCGTCAAGCTACAAAATTCACAGTGAAGTCAAAATTA
CTCCTGAACATGCACTAAGAAAGTGTACTAATGGAGAAAGGGCTGCCATTTTGTACATGT
ATGAATACACAAAGATAAAGAAAAATACATAGATTCGCCGCTATTATTTTCTTCAAGAAA
ATGCAAAAGACTCTTTGCGTTTCATTTCATTGAAAAGATGGAAAGTACAATCCTCCTAAG
AGGCTGGTTATACATGGGTCGTGCGCCCCGGTCAGTGTACATCCCAGGATGTGAGAGGAC
AACCCGCTATTATACAATACCAAATAAGATCAACGGTAGCAAAAATCTCAAATATTCATG
TTGATACACCGTATCATCAGCATACCTTTTTAACTTGTTGAGCAGTGTCTGGAGGAGGCA
CGGCCAAATAGCGTGGAAGTCTAGCTTTGAACCATGAATGTTCACGAATTTCACGTATAG
TAATCCTCTTCATAGGATCAACAACCAGCATTCTTGGGATCAAATCTCTTGCTAAAGGAG
ACAAGTGACTAGGAAGGGTGTATATTCCACCCTATAATGACAAAACAGATAACTTATTCA
CTGGATATCAAGATGAAATGGTATAGCACATTTTTCAGTAACTGGAGAAGCTAGTTACTA
ACCTTTATTTTCTTAAAAAGGTTTGGTATATTCTCATCGTCAAATGGAAGAGTGCCACAA
AGAAGAGCATAAAGAATAACTCCACAGCTCCAAACATCAACTTCAGGGCCAGCGTACAGT
TTACCTGATATCACCTAAGCAAATGGAGAAAACATTGCCGGGTATCAGAGTTGTGACACA
TTAGCACGACATCAACATTTATTAACCCTGTAAAACTGTAGAACAAGTGATTCTAGAGAT
ATACCTCGGGTGCTGCATAATTTGGGCTACCACAACTAGTCTTCAGAAAGTGTCCGTCAC
GCATAACATTACTTAAGCCAAAATCTGCAATCTTAACATTACATTTCGAATCCAACAGAA
GGTTCTCTGGCTTCAGATCACGGTGAACCACCATGTTTCTATGGCAATATTCCACACCAG
ATATAATCTGTATGAAAGGTGAAACTAATAAATAGCCTACCATAAGCAGTGAATAATGTT
CATACATTACATAATGATATTATGATAGAAGCAGACAAAAACCAAGTATCTACAGTGAAA
AATACAGTTAACAAACATGACAGGTACTTTATATTAGCTTATGGCAACATACTGAATTTG
TTATGGAGTATATAATAAGTCAAGAAAGGGCTTGACGCAATCTTTACAATGAACTCAGGG
AAGTGGAAGGAACATACTTGCTGGAAAAAGCGACGAGCTTCTTCCTCTTGTAATCTTCCC
TTCTCAACAATATAGTCAAATAACTCTCCAGATTTAACATACTCCATAACAACATAAATA
TCCGCTGGGGTATCTATGACCTCATAAAGCCGTATGATATGAGGATGCATAAATAATCTC
AGTATCTTGATTTCTCTTTTCACTGTAAATTAGCAAACAAAAAAAAACTGAGATTTGAGC
AAAGTGCAAAACAACAAAAGTTGCAAGAGTACGAGTATATATCAATAAACTAAGGCCCTG
TTTGGAACCACCCAGATTNNNNNNNNNNNNNNNNNNNNNNTATTCTGTCTCCAAACAGGA
CAGATTATNNNNNNNNNNNNNNNNNCTAGATGGACAGATTATTAAAAAATCATAATCTAC