| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
 |
Predicted Genes from contig_1560734
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11272 |
3 |
1414 bp |
MLOC_11272.3 |
Available |
Available |
LOC_Os06g39640.1, FRAME:+1, EVALUE:0.0, 13106.m04111 protein PINHEAD, putative, expressed |
| MLOC_11273 |
1 |
479 bp |
AK354528 |
Available |
Available |
None |
| MLOC_11274 |
1 |
3765 bp |
MLOC_11274.1 |
Available |
Available |
LOC_Os06g39650.1, FRAME:-2, EVALUE:0.0, 13106.m04112 protein pentatricopeptide, putative, expressed |
CDS Structure of MLOC_11272
CDS Structure of MLOC_11273
CDS Structure of MLOC_11274
Contig Sequence (8894 bp)
>contig_1560734 8894 assembly3_WGSMorex_rbca.fasta
TTTTTTTTTTTTTTTTTTTGACACAGCCGATAAGCCTTTGTAAATTTTCACGTGTAGCAT
GTTGTTTAGTTTGATCTCTGCTGTTATTGCAGGAATTCAACAGTGAACCGGTGCTTCCAA
TATATTCAGCTAGACCAGATCAAGTAGCGAAGGCACTAAAGCATGTCTATAATGTAGCAC
TACACAAACTCAAGGGTAAAGAACTTGAGCTTCTTTTGGCCATCCTCCCAGACAATAATG
GAGCTTTATATGGTAAGTGCCACATTAATGCTAATTATCCCGTGTATTTTGTTTTCATCT
GAACTCTCTTATATTGTGTTGAATCATAACTCTATTTTTGCAGGTGACATCAAACGTATC
TGCGAAACCGATTTGGGCTTGATATCGCAGTGTTGCTTAACGAAACATGTTTTTAAGATC
AGCAAGCAGTATTTGGCAAATGTCTCGCTTAAAATCAATGTTAAGGTACTTATTTACTTT
ATCACCTTATCTACATCTAACTTACTATAGATTGGTAATCTAGTAATTTGCTATGATGCT
AATTTATTACATCTTGATATGATTGAATTCAGATGGGAGGAAGGAACACCGTGCTCGTGG
ATGCGCTAAGTTGGAGGATTCCCTTGGTCAGTGACATACCAACTATTATATTTGGGGCAG
ATGTAACACATCCTGAAACTGGGGAGGACTCTAGTCCATCCATTGCTGCAGTAAGTCTTG
GAGACTTGTTCTGCTTATTCCACATTCACTATATATATATACATATTCTTTGGCCCTTTT
CTAATTAGCGGCTTGCAGGTTGTGGCTTCTCAAGACTGGCCGGAAGTTACAAAATATGCT
GGATTGGTGTGTGCACAGGCACATCGACAAGAGCTCATTCAGGACCTTTACAAAACATGG
CATGACCCTCAGAGAGGCACAGTAACAGGAGGCATGGTCAGGTATTTAGCAAGATACACC
TTTTGAAAACTAGTAAAATAACTTTTTCAATGAGATACTTGATGTGTTTATTTTGCTGTG
CAGGGAACTCTTAATATCCTTTAGGAAGGCCACGGGACAGAAACCATTGAGGATAATTTT
CTACCGGTAAGCTAGTGCAAAAGTTAATAGATACTAATAGATAGTCAAACACAATAATGT
TTAGGTTTGACATATTTTGCAGAGCAGAGTAAAAAAAAACATTTCCAAGGCTTGTTTTTA
TGGCAATTCTATTAAATATTAACTAACACTATCTTTCATCCAGGGATGGCGTTAGTGAAG
GCCAATTCTACCAAGTTCTCCTTTATGAGTTGGATGCTATCCGTAAGGTAGGATACACTT
GTATTTTCTTATGTAGATCTTCTAACCATTTCAGCAGACTTGTCTAACAAATGCTTTCTT
CTAGGCTTGTGCATCCCTAGAACCAAATTACCAACCTCCTGTAACGTTTGTCGTCGTTCA
AAAGCGTCACCATACAAGACTGTTTGCAAACAATCACAAAGACAGAAGTAGCATGGACAA
AAGTGGAAACATTTTACCTGGTAATCATCTATCCATGACCTCTATATGTTTTAAGCCATG
GGGTGTACTGCACATTATTACGCCAACTAACATGTTCTGAACTTTTTAGTGCTTAACTGA
TTTTTTATATGATACCACATTTTTTCATGCTGTGCATTCATAACTACAGCTTGTTGAAAC
TATTGAAACACAATTTGGGTAAGCTAAATAATCCCTCCGTCCCAAAATAAGTGACTTAAA
AATGACTCAACTTTGTACTAAAGTTAGTGCAAAGTTGAGTCAGTTATTTTGGGACGGAGG
GAGTACTACTCAGTCCCATAATATAAGATGTTTCGTCTTATATTATGGGATGGAGGGAAT
AGTTTTCAGAAAGAAAATTTGGGTCTGCCATTGTTGTAGGATACTGTATTTTCTGGGGGT
ATAGGATACTGCATGTAATAGCACTCCCTTCATTTTTGTATACAAGACGACAAACCCATT
TTACAGGTATCAAGGTAGAAATTAATGGCTACTTGAGCCAATGTTGCCTTGACGTGTTAA
TTAATGTGTATTTTACTCTTCAACACACAACTAGGCAACTCTTTCACTCATTGATTGATT
AATGTGTTCCTTTAAACCAACCTTCTCACATCCGCATGCATACATGGGATATTAATGTCC
TTGGTTGCTAGTATGAGGCAAACCTCATCAATTCACCTCGATTGATGTTAGTGGCCTTGT
ATAGCTGCAAATTGTAATTTTAATTGTGGTCTTGTATAAAAAAATGGAGAGAGTATGTCA
TTCCATTGTCTTGATAATACAAGGACTAATTGTTTGGAAAAAAATAATACAGGAACTGTT
GTTGATTCGAAGATATGCCACCCAACGGAGTTTGATTTCTACCTCTGTAGTCACGCTGGA
ATCCAGGTAAGAATATTGTACTGGTCCTTGCTGAAGGCTGACATATACATGCTGAATTTG
TCGTTGCTCTGGTCCCGTGCCTTGTGTGGTCAAGTATTTGAATAGACTTGGTGTTCTCTT
TTCAACAAAGCTCTCACTGTGCATAGTTACCTAGCAGAGGAGACATGGTAAAAAGAATAA
ACTAACTGATAGTATGCCAAAAAAATAAAAATTAGATCCTGTGAATGTACAAACACATGA
AAACTCCCACATCTTTTCGAAAAGCTTGTACTGTACCTGCAAAAGTGTTATAGTGGAAGT
ATGGGAACATTTGCCCCAGATTCTGCACCCTCTTGTGATTGACGAAAATTGACGAAATGA
CTGATGTGTGAGTTCTCTCACCAGGGTACAAGTAGGCCAGCTCACTACCATGTCCTCTGG
GATGAGAACAACTTCTCAGCAGACGAAATGCAGACGTTGACAAACAACCTTTGCTACACG
TACGGCATGGCTGCTTTGTGTTATGTTTGTCTCTTGCTCTTCACCCTTGGATCTTCTAAG
AAGTGCCTGATCTGATTCTCTTATGCTGATTTTGCAGTTACGCACGGTGCACGCGCTCTG
TTTCCGTCGGTATGTTCTTCTGTGCTGACATTATAAGCATTCTCCAACTTCATAATTTAT
GTACAAACATTATAAGTTCAAATCTGAACCGTGGTGCCTTTGTGTTTGCTGCTTCAACAG
TCCCACCTGCATATTACGCGCATCTGGCTGCATTCCGGGCGCGGTTCTACATGGAGCCGG
AGCTGTCGGAGAACCACACGTCGAAGAGCTCCAGTGGGACGAATGGTACCTCCGTGAAGC
CTTTGCCCGCTGTGAAAGAGAAGGTGAAGAGGGTGATGTTCTACTGTTGACAGAGGGACT
AGTTTTAACTACTCACAGTTATGTGCCTAACACTGTAGAATTTAGCAGTAGAGGGTTAGG
TTAGATTTCTCCTGGAAAGGAAGAGAAGAGAAGAGAAGAACATTTCTGCATTTTGGACCC
CTGAACTATCTCTCGACTGCCTCTGTAAAGTACTCAGAAAGCATGTATAATAGTAGTTCT
TGCTTGGGCCAGATGCCATCCAGTTCCTGAGTAGTAACGTTTAAATTCGCCAGCATAACT
GGCTTGCATGCTTCTGACCACTGCTTCTGATATGGTTGCTCTGATGCTTTCCCATGACAA
TAATACCGAACATCTCCATAAAACATAATCAAAGAGTATAGATGTAGGATGCAAAAATGC
CTATCGGAGCTGGGGTCCATGGCACCCTGTTTTTGAAACCCCCAAAAGAGTATACATGGA
AGCATAATACAAATGTGTGCAAATTTTTAGAACAAAATAAGTTGAAACGACGTCTGTGCA
AAAAAGACAAATTTGTCGCTTTTTAACACATCATACTATTCATCCCAAAAGTCCATAAAT
TTGTTTTTTTTGCACATATCGCATCTTAAGGTATTTCATCCTAAATTTTTGCACACATAT
ACATTTCATCCTTGTGTACTTGCGTATTTTTTTCAGATGTTTTTAAAACAAAAAAAATGA
ATTTTGAATTTTCTCAAAAATAAACGGTGCCATGGAGCCCGAGCTCCAAAACGCCCTACT
CTATAGGATGTAGTGTAAAAAATGCTCTTATATTATGGGATGAAGGGAGTATGATAAAAT
AAAGTACCCCTGAAATATCATTCTGAATAATGAGATTATAACGATAAGCATATTTTAAAG
TTTAAAAAGAATCTGAAAAAATCATGAAAACATACATGTATTCCGCAAGAACGTGTTAAA
TTTCGTCTAAAAATGTTGCGATTTGTAGGCTGTACAAAAAACAATTCTGGCCCAACAACA
AAAATAAAAGGCCCATTTAAAAATGTGTATTTGTCTTTTTTCTGCATGATACATGTAAAT
GTATAATGCTCTGAAATTTTGCACATACGTTTGCATTTTTTGTTTATGGGTTACTCTATG
ATAGGTTGATTTTGTATCAATATTTTGGAAACAAAACAATACCCTTTTTATGGCTATTTG
TACTGCTATTTTTGGGGCTGGAACCATAATATTTCCTAGGTGTTGTTATCAACGGACTTA
ACAGGGCTTTCTTTATTGTATCGTAATTAAAGTTATCCGTAACTGAAATATCCATACAGA
ATGAAGGCAATAGGCAATACTAGCAGGTTACCTTCATGAAAAAGAAAGAAAGCTATCAGT
TTATGGAGTGTCATTCTGATTTTCTTCCACATAGGTACAACCAAAAGTATGAAATGAACA
AAGCAACTGAAAATGCAAATACAGACAGAAAATTGCTATATTGTCATCAGCTACAAGCCT
TGAATTTTGCCTTGTATGGTAAACTAAATTCTTGTTTAGTTAATTCACCGAACCCAAACA
GTGGCTTGAATTGATATTAGACTTACAAGAGGTGTTTTAACATGTTGTGAGGCAGCCAAC
TTATGTGACATCCTGAACAACCTTCTGAAGATAATGTACTGGATCATGGTCACTGAAATT
CCGAGTGTTGGTCAGTTCGGGCTGAAATCCATCAACTAGTGCAAGCCAAGTATTAGCTAG
TCGATTAAACGGCCAGTGTTATACGGTCTCATGATAAGATTACAAATGGTCACACTAGAA
TTTGATACATTATTATTAGTGTCAAGGTGCATATTAGCTCATAGGTATATTCATCTGCAA
CAGAAATAGGTGAAAGATACTAATGACTTGGTAACTAACCTTCATTTATTTGTTTTCAGA
AATGTATATTGTTTCACTGTAGGAGTTAAATAAATAGTAATTTGACAAGTCTCGCTGAAC
ATGTTCAAACAAATTAATAACAGCTAGAAGAGGTAGCTCGCGAACAAAACACTAGGAAGA
AACTAGCTCCACTAACCTGAAACTGTGTAGTGTGGACCATACCTGCGATCGGTTCCTGGA
ACTAAGTAGTGATCGTTATCGATGATCAAACCAACTAACTGCAGAAGACCGTACATTTGA
ATACCTCAGTTCGGAAAATTTTAGTCTGGAGGTCTCTAGGAGGTGAAAAACAGGTGGAAT
TTTGGGCACCTTTTTAATTGTTAATGAACTGAGTGACCACAACTGAATTGATCAGAATAT
TTTGGTTATATCAATGTGGTCAACTCTAGGAAAAATTACTCAGACTAATTGATGTTTTAG
CCATTCCTATGTTGAAGCACTAGATGTGCAAGTGCTAACTGCCATTTTCAGTATCCCTTC
ACCTCGATCAAGCTGCACCCTGCATTTTTCTTGACACTGGGGTGTGCCATCTTACTCCTT
ACTCTTACTACATCCTCCCATCGACTTGCAGTTGCATACACATTAGACATGAGCAAATTC
ACATCAGGAATTTGGTAGCCTTGCTTGCCTATACGTTTCGTCAGTCTTTCGCTCATCTTG
ACATTGCCTTGAGCCTTGCAAGCAGTGATGAGTGCACCAAACAGTGGCATAGCGTCCTTG
TTAATTGGTATACTCTTGATCAACTTCTCAGCTTCATCAAGTTGACCAGCACGACCTAAA
AGATTGACAAGGCAACTATAATGTTCAACTCTTGGACGTATCCGATAAACCTCCTTCATA
GCACGAAACTGTTTCCGCCCTTCATCAACCAAGCCACCATGGCAACATGCACTCAGCACC
CCAATGAAGGTAACACTGTCAGGCTTGGCTTCGCTCCTCTCCATATCCTCAAACAATTCG
AGGGCTCTACCTGCCTGACCATTTGTGGCCAGGCCGCAGATAATGGCAGTCCAGGCTTTA
GTATCTCTGCCTTCCATTCGTTCAAAGACCTCCACCGACTTCTCTACATGCCCACACTTG
GCATACATGTCAATCAACGCCGTGCCAAGAACTGCATCAAGCTTCATGTTCCTACCTTCA
GCAAACTGGTGGATCAATTGACCTTGATCAAGCGCGCCAAGATTAGCACAGCATGTTAGG
AGAGTGACCACAGTGAACCTGTCCGGCTCAATTTGATGCATCTGCATGTCTCGAAACAAC
GACAATGCCTCGATGAAGCATCCGTGTTGTGCATACGCGTTGATCATAGCAGTCCACATA
ATTAGATCCTTCTCTGTGCACTGGTGGAAGAGTAGTCTGGCCTTGTCCACCTGTCCGGCA
AAGGCATAACCCGACACAAGTGTAGTCCAAGAAACGACGTTCCTCGACGGCATTTTCTCG
AACAGGTTCACCGCCTCTTCCAAGCAACCATTCTTGACGTACATGTCCAGCAGTGCATTT
GCAACTGGGAGGCTGAACCCAGTGACTCCATCCATATAGGCATGAATCTTCCTTCCTAAG
CTCAGGTCACCGGCTCTGGAGCACGCGGTCAGTGCGGTCAACAACGTGACCCTATCCGGT
GTGAGACGGCCCCTTTCCATCTCCTCAGCCAAAGCAACCGCTTCTGTGTTTCGGCCGCAC
CTGACATAGCACCTGAGCATCATATTCCACACCACCACCGCCCTCTGCGGCATTTCGTCG
AACACCTTCCGCGCGGCTTCCAGACGGCCCAGCATCGTGTACATGTCCATGAGCGAGCTC
GCGGTGTAGGCGTCCCACCGGAAACCGGTCTTGAGGGTCGCCGCGTGCGCCTTGCGTCCC
TCGACCGATATCTGGAGGGCACCGATGGCCCTGAGCACGAATGGGTAGGTGAAGCTGTCG
GCGACGAGGCCGCGCTCGCGGAGGTCATAGTAGACCGCCATGACGTCGGCGTGGCTGCTG
CGCCTCGCGAGGGTCCTGATCAGCAGGTTGCACTCGCGCAGCGGCATGCCGCGGTGGCAC
GCCGGCGCCATCCTGGGCGTGTGGCGGCGACGCGGGACGCGTGGGCCGGCCAAGATGGAA
TAGTTTTTTAGCCAGGTGCCGTGTGCCGATAGCAGTGAGCGATAAGAAAGAAGCCTCGCG
GAGTCGGGAGAAACGGTGGCTCTCCTTTAGTGAGATGGGTGAGCGGGTGGCCGTCGTGGT
GGGAGGGAGCGTGGCGGGCCTGGCCTGCGCGCACGCGGCGGCGGGGGCGGGGTGGAAGGC
GGTGGTGTTGGAGAAGGCGGCGGGGCCGGCGGCCGGAGGCGGCACGGGCGCCGGGCTCGG
CTTGGATGCGCAGTCTATGGAGACCCTCGCCCGCTGGATCCCCCGGTGGGGTCTCGACGC
GGCCACGCTGCCGCTCGCCGTCGACCTGGTAAGCCCGTCCGTCCTCCCCAGTAAATCGCA
AAGCTTGGCTTCTTCCTTTGTTTTATTTTATTTATTGTGGGCATGGGTTGAGTGCCCCTG
TTGCTGCCGCAGAACAGGGCAACGGACAGCGAGACGAAGGCGGCGCGGGCGCTGACGAGG
GACGAGGGCTTCAACTTCCGCGCGGCGCACTGGGGCGAGCTGCACCGGCGGCTTCACGAT
GCCCTGCCGGCCGCGGTGACCGTGCGCTGGGGCCACCAGTTCCTTTCGTTCGAGGTTTGT
GGCTCGGACGGCGATGGCGGCAAACGCGGCGGGGTCCTCGCGACGGCTCGCGTGCTCGGC
ACCGGCGAAACGGTGGAGGTCGCCGGGGATTTGCTGGTCGCGGCGGATGGCTGCACGTCC
TCGATCCGCCGGCGCTTCCTCCCTGACCTCAAGCTCAGGTGAGTTACAGACCTCTTCGAC
ACTTATGATCTGACAGTTACTTACATGTCTCACATATGAGCATTTGCATCGAACATTTCC
ACTAGTTGATCAGCTCGTTTTTAGGACATTGGTTCATCACGGACGACACCATTTCTTGTT
TTTGCGGCCAATGTGCAGGTACTCCGGGTACTGCGCATGGCGAGGGGTGTTCGATTTCAC
CGGGAAGGAAAGCTCTGATATCGTCGCCGGCATCCGAAGAGCGTACCCAGAGCTCGGCAG
CTGCCTGTACTTCGATCTGGCCGAAAAGACTCACGCCGTGCTCTACGAGTTGCCAGGGAA
TAGGCTCAACTGGCTATGGTACATCAACGGCCCAGAGCCAGAGCTCACGGTAATGGCGAT
CGCTTGTCTGCTTCTCCAGTTGCGAACCACTGATGATGTGTTTCTCTGACGGGCTGAGCG
ATCGGTCGGGGTGTGGCTAATCAACAGGGGAGCTCCGTGACGATGAAGGTGAGCGACGCC
ACGCTGGCAGGGATGCAGGACGACGCCGAGCGCGTCTGGTCGCCGGAGCTGGCGCGGCTG
ATCAGGGAAACGGCAGAACCGTTCGTGAACGTGATCTACGACGCGGACCCGCTGCCGCGG
CTGTCGTGGGCGGGCGGCAGCGTGGCGCTGGTCGGCGACGCTGCGCACCCGACCACCCCG
CACGGGCTGCGGAGCACCAACATGTCCGTCCACGACGCCCGCGTGCTCGGGGAGTGCCTC
GGGAGGTGGGGGGACACGCCGCCGCCGCGCGCTCTGGCCGAGTACGAGGCCGCGCGGCTG
CCGGGCGGGGCGGGGGGGGGGGGGGCCGCCCCGCGGGGAGGGGGGGGGGGCGAGCGGGCG
GCGGGGGGGGGGGG
