Contig Data
morexGenes
Links



Map Locations of contig_1560721 (3740 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560721

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11263 3 1485 bp MLOC_11263.2 Available Available LOC_Os02g42550.1, FRAME:+1, EVALUE:3e-20, 13102.m04720 protein expressed protein
MLOC_11264 1 634 bp AK358224 Available Available None





CDS Structure of MLOC_11263






CDS Structure of MLOC_11264






Contig Sequence (3740 bp)

>contig_1560721 3740 assembly3_WGSMorex_rbca.fasta
GTTTCTAAATATAAGCCCTTTTAGAGATTTCAATAGGACTACATACGGATGTATATAGAT
ATTTTAGAGTGTAGATTCACTCATTTTGCTCTGTATGTAGTCCATGTTAGAATCTCTAAA
AAGGCTTATATTTAGGAACGGAGGGAGTAAAATAATAAGTACCGGCTGAACCTTCACATA
TGTTTCCAGTGGTATAGTATCGTAACTATGTTATTAATAGCTAAACCAGGATGTTTTAGG
AATGCAAATGCCCAAACCATGTCAGGTCAGACGCAAAGTGAGAATATGAACACCCTTCTT
TGTCTGCTCAGGATCAACCCGAAGTCCCCAAGAGGATGACAAAAGAAGAAAGAAGGGTCA
GGATAGAGGAATTTGTTGAAAAGTAAGCCAACTCGGCCAGACAGCATTTCTGATTGTTAT
TATTGTGATAAGCACTTGTTACACTTTGTGTCTGCTTCCTTTATCTAATTTCAATCATCT
CGGACGAAGGATGAACTACTACGTTCCGTACTATAGAATTACACTGTACATTACATAGCA
ATGTCTAACTCCCGAGCCAATTGATCAACTCTGTTAATCAGATGTAAGTTCCATACCGCC
CGAGATATAGTGCTTGATAAACGATACCATTTTCTTATTCAAGTGGCTCTGTGAGCGGGG
ACAAAAGTTCAAGAAGCATGCTGTAAGCAGCCATTAAATGCTTCACAAACTTGGCTAGGA
TTGGATTCAAGCAAAACTGCTAGTTCAGCTTAACGAAATTTGGAAAGTGAGTGATCTGAT
TTATGGGGTTAAGCTATTGAATCAGATTTTATCTTTGTTCTCGGATGAAAACCAAGTTTT
AGATTCAAAATAACCTTCGCTAAATTTAGATTCTGGAAGTACCAGTTCTATACCGATTCT
CGCTGTTATCAGCTGGATATAGCCGCATATAATTGTGCTTCACCCAATGAGGAGTTAAGG
ACTCGTTTGTGCTTGTAAATCTTACATCCATTGCTTATGCCTGGCTCTATTATTAAACAC
AGTTTCAGGGCTTCACATGAAGGAAAATTTCCACATGCGACATATGTTCGTCAGCAGGTT
GGAGGTTCATACTATACAGTGCTGGCATTACTCCAGGAATTGGAGTATAATTCAAGACTC
AAGAATGATGTCAAAAATGCCTCTTTCAGCTCAGAAAACTTCAAGGAAAAATACGGGCTC
CACAATATCGATCTCTCTCCAAGAGTTGCTACTACAAGCTTTCAGGGTGTAAAGGAAGAA
ATGGTACCTTATTACAGATAACCTACTTCCACTCTTCATGTTTTTCTTTTTGAATTTTCG
TCATTGAACATCATCACTGTGCATGCTTAAATATTCATATATCTCCAATTATGCTTGTGC
TCCTAAACAATAATATACTAATAATAATTATCTACTTTTGCAGGCTAAAACTTCAGAACC
TCTGGATCTAAATACTAAGCCACAACTTCCAGAAGGCCATTGTAAAGCTGGAGCTGTCAA
GCCAAACTTATCCCCAACAACTAGTTTGGAGGATAAAAGTGAGCCAATGGCATCAGGTCA
AACTGAAAACAACAATGTGGTCAAGGCACAAAACCTCAAGAGGTACTGCTTCCATTCCCT
TGCACAAGATCAACAACTGACTCGCAGATGAGTGCATGGTAACGGGGTAACTAATTTTGA
CTCTGCAAATTAAGCAGCATGAGCACCTAAAGATAACTATTTGAGACAATCCCTGCATTA
TTCTTAAATTGCATCAAACAAATCAAGAAATATGTGTTTATCTGTAGCACATGTATAAAG
ATAGCTTACATAGTCCTCTCCGCCATCGGTGATTCACACATTTTAACACTAAGATATTGG
CATGTGATGTTAAATTGGTTGCTACAGTCTTATACGTTCCTCACAGCTTTTCTTGATCTG
CAATGCAGCCCTAAGCATGCGCATGAAGCATCGAAGGGGGCAAATCTTTGGGGCAGCCTG
AAATCCTTTGCTGGTGACCTCAGGATCTTTTGGAACAATCTGTAAATTGATATAGTCTGG
CTTGCTAGATGTGATTACATATAGGATTCACATTCTTTTCATGACCTGAAACACAATTGT
AAAGTACAGTACTCCAGGAGGACCATTCCTTCCATCTTTCAGATGATACCCCTGTCAGTT
ATACAAGTCACATTACAAGTTGGAGCACTCTGTTTATTGACCCCTTCATCCAGTTTGCCT
GTGTCAAAATTAAATGGAAGTTTTCCTTTATGTTTTACAGACTTGATTGCTCATGTTGTT
TTACATTCGAGTCTGGATGCTCTTCTCCCCTCAAAAATAAATAAATCTGGATGCTTTTGT
ACCAACATATTTGTGTACATTGGGTTCAAAATGGCTTCGCCTCAGCCTATTAAGATGTTC
TAACATTTTTCTGATTCAGATGTACGCATTTTTAGAGTGTTTGTCGACTCATTTCAGTCT
ATATGTAGTTCATATTGAAATATCCAAAACATCTTATAATTGTGAACGGAGGGAGCACTT
AGAATCTCGTCAATCCGGCAGCACCATTCCAAACATATCCTGGTTGCACAAGTGTGCAAC
TTGCACCGAAAGTAGGGATATATATATAAACTTGGTTCAGTCTTATAATTCATGGATGGA
AACCAATAAAAGAATAAACAACGCAAATACAGTTAACAATTGTCGCTTTATATAAACTCA
CTGCTACCATTCTCTCAACAACTTCCTTGTTTTAGTCAGGTGGTAGACAGGTCCGAGACT
CTGCCAGAAGCTACAATCCTAGTAGAAGGTAGATTTACAAAACTTGCAGTCAACTATTTA
GGACAGCCCTCTCTTCTTCAACCGTTGACAAAAACTCATGCCAAGCTTCGATGATGAAAG
ATGATAAGTACCCAACCACTAGCATGCTTCAAGATGATGATGTGGTACCATGTTCAAAGT
CAGAATCATCGACCATCTTTTCTAACGATTCGATATCACCGGCTTCAGAAAGGGTACGAC
TGCGAAGGCTGTCTGCATCCTCGCTGCTCAGATGAAAACAGAACAAGAAAAAACGGTTAT
GACAGTAATATTGGATACACCAGTTGTGGTATAAAATTATTGATGACAATCCACAATAAA
GATTTAGCCATACTCTGTAACTCCAAAGATTTCTTTGACAACAAGCGAGCCATCCCGAGA
ACAGAACTCTGGGAGCTGGATTATTCACAGATATTCGGTTATAATGGAGGAACAGGGAAG
TAAGGAGCTGAATACATTATAATACAACATCATGACATCTAAAATATTTTAACTCTGTTT
TGGAGTCCTGAAAATTCTCAGCTGCAAGAGTCAATAAAAACAGACTTGGAGTCGATAGAA
ACAGAAGCAGCAGCTTACCTCTGATAAGTACATGATTTTTCCGAACAATGTTTGCACAGC
AAGCTTCCGCTTAAAACCTTGTTCCGTAAACCCAGACAAGTCCATAACTATTGGACCTGC
AATATCATAGAACACAAAATATCCTCAGCACTCTAACAGTGTGCTAGCATAATCTTATGC
ATCAGGTTAAGTTGTGAATCAAACAAAATGATCACTCCTACCAAAACCAAGCAGCAGCAA
CAACAACAACAACAAAGCCTATAGTCCCAAACAAGTTGGGGTAGGCTAGAGGTCAAACCC
ATAAGATCTCGCGACCAACTCATGGTTCTGTCACATGGATAGCAAGCTTCCACGCACCCC
TGTCCATAGCTAGTTCTTTG