Contig Data
morexGenes
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Map Locations of contig_1560699 (5966 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1560699

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11255 1 1047 bp None Available Available None
MLOC_11254 1 3473 bp MLOC_11254.1 Available Available LOC_Os11g27430.1, FRAME:-3, EVALUE:0.0, 13111.m02628 protein NB-ARC domain containing protein





CDS Structure of MLOC_11255






CDS Structure of MLOC_11254






Contig Sequence (5966 bp)

>contig_1560699 5966 assembly3_WGSMorex_rbca.fasta
GGCACGAACCGGGACTAATGCGTCGAACCGAACCGGAACTTTTGCCCCGCGAGGCCCTGG
CAGCTCGAACCGGGACCAATGCCCGGCATTTATCTCAGCTTTATTTTGACCCGGGGCTAA
TGTGATTTCGGACTGCGGAGGCCTCATTTTCTACTAGTGTCTCAGAAAGGTTGAGCATGT
AGGTCGCCATGCCGAGGGTCATCGGGCCGCTTCCAGGGCCAGAGAGGCGGTAGATCCACC
AGGACAGGGACTACTGGGTACCATCTTGATAATAAAATGTTGCACTGTAAACCGAAAAAA
GAAAGTAATAAGTTATATAAAGTGTTTTGTTTTTTCTTGAAAGGAAGTTATATCAAGTGT
TTTTTGTCTGGGCTCATCATCATATTCCAGACATTTCTATTTCTTCTCTTTTATTTTTTA
TCAAACACTATCTTTTGGTAATTTGATGAGCAACCTCACCTATACTGATGGCTTCTTAAA
GAAAATAATATCAGGGGCCTGTGCAATTAGCTTTTGCACCCTCTCATGGGTGTTCCCATG
GATCATAGCGTTCTTTTTCTTCATCTGATTCCAACGGTCTGCTTCCACTGAACACACCAG
TTACCAGGTGCTCACTTGGCCGTTATATATATACTTCCTTCGTCCCAAAATAAGTGTTAA
AGTTGAGACATTTATTTTGGAACAGAGAGAATATATAAAATCACTCACATCAAGTAAATT
GAGATTCCAGAATTTATCCCAAACAAGTGCTAGGATATAGTTGTGCTAAATTTATGAGAA
ATAATAGAAGCCAGTTAAGTTGACTAGGCCTGAAATAGCCAAATACATGTCCAACAACAA
ACAGAGTAAGCTTATTTATTACAGCAGGAAGTCACCATATTTCTTGAAAAGAAAATCGTT
TGCTCCGCTTAACAGACCATTAACTTCGATCTGTTACAAATAAATAAATCCTAGTGGTGA
CACAAAATAAAAGTACGAACGGCGGGGAAGCCAGGAAATCGACACGAGAGCAAAGAGGAG
TAACTTATTCAACGGACTTGATCTTGTTGACGAGACACACTTGTCCATGAATAGCCATCA
ACCAATTAGCAGCATGCGGCAATGATGTGCCATTAGCAACTCGCTACTTGTGCTGCTGCA
AAATAATAATAAAGTTTCATTACCAGGATCTGAACTGTGCATGGAGAGGTCAGGAGAAAC
AATTGCAAGGCAAGTAAATCACGATTCATTACCTGGATGTGCGTTGATGGTGTCTAGAGA
AACAAGATCTTGGGACGTGGACTTGGGAGGTTCTTTGCTGCTTCTTTCCACTCATTTTTT
GTTTCATCTCCCACATCACGAAGGAGAGCAATCTGGTCGAGATGCCGAAGAGACTGGACC
GTTGACATGCCAGAAATTGAACCATCTAGATATTTGCATAGCAGCTGCAGCGACTTGAGG
CGAGGTAGAGCTCCCACATGGATGTCCAGCTGAAAAATGACGGATTCCACCACGATGGAT
AGGCGTGTCAGGCTCTCAAGCGTACCTTCTGTGATGACGAGGTTGCCCAGGCTAGTTGCA
ACCAGCTTCAGGTATGCCAGGCGGGGCACTTTGCTCAGGGCAGCAAGGAAGTCTTGGCTC
AGGTTCAGCTGCGGGGATGAAAGGCCTAGCTTAGTGAGACCACCCAGAAAGGCAACAAAT
GGGGGCAGGCTGCATATGTTGCTTCCTTGCAGGTGCAGCTTGAGCGAGCCAAGATAGCAG
CGGTAATTCTTTCCTTTCTCTAGAGAGAAATCCAGCATTTCTGGGGTCGACTCGCCTTCA
AAACTGAGTGAGAGTGAAGGTGTCCCGGTGTACACGGTGCTTCTCTCAATGAACCCCTTG
ATGGCCTTTGCCAGATGACTTGAGCTGCTGACATCGGTGGTAGGCTCACACCATATTTTC
ACCTTTGTCAGATAATTCATATGATCCATGAGCTGTGCAAATTGTTGGCTCTTGGTGCTG
TCCACAACAAATCCTGCCAGTGTTTTCAATTCGCTCTCCTCTAACAACCAACTCTGTAGC
TTACTCATTCTCCGGTCTCCTACATCTTGTTCGAGCTTAAACTTCCCAAATATATGAAGT
AAATGTGGCAGCTCCAGGACTTGTGTTGGCAGAATCTCTATACGTGTCCTTCTTACATCC
AGTGTATCCAATAATTGAAGCTTGCTGATCTCCTGTGGAAGCACCGTCGCAGTAAGAGCT
TTCCCGAGGCATAGGTACCTCAACAGCAACAGTTTTCTGCATATCAACTTGAGATGGCTA
TCCCCCAAGGGTACATCGCACTCGTCCAGATCCAAAACTCGCAGCAGTTCATACTTGGAG
AAGTCCAGGACAGATTGGTGCGCTTTGCCCAAGATTGTCAGTGACCGGACAAAAGTTAAA
CCTTGCACTTTTCTGGGCATTGCATGATGCAGAGCAAGCCGACGAATATTACTGGGTAGG
CCTGGGGAAGACTGCCGATTGCTTAACACAGTTACAAAGTTGTCAGACATGGACTTGCGC
AGGACGAACTCCAGCATCATGCCATGGGTATGGCATGTCTTCACCTCTGTGCTGTTACCG
CTGGCATCCATAGGCTGGATGATACTCCGTTCGACAAGCTTATCGAAATTTCTAATGGCG
GCATCAACATCACTACATGTATTGTCTCCTGGGGACAACCCTTCTGCTAACCATCTCCTT
AACAAGCTTGATTTCTTGATAGGACGACCACTTGGGTAGGTACCCAAATAGAGCAAGAAT
GTCCTGGCAACCTGGCTATCAAGGCTGGTGTAGCTCTGGACAAGCACACGCCTCATTCTT
GCAAATAGATCATCACTCTCCAGATGTGTACCCAGGTCGGCGCATAATTTTGCCCATATC
ATGGGTGTTGGATTACCTGCGCTTTGCAAGAACCTTGCGGTGGTAACAAGAGCAAGGGGA
AGACCATCACATTTCTTGAGCGCTTCAGAGCTGAGGTCCTGCACATGCGGCGGCGGTTCA
TCGTCTTGGAAAGCTTCCTTGAAGAACAATGTTCTTGAGTCTTGGTTGGTAAGAGTTGCC
ATTGTGTATACATGATCATTAACAGATGAGCTGCGGCAGGTATTTGCTACGGGCTGAATG
GCGGTCGTCACCAGAAATCTGCCGGTTAAACCCACAAAGGCTGCTTTTATGTTGTGCCAA
TGTGATGTTGTCCGCAGGTCATCAATTACAATGAAGAACCTGATTGGTACCAAATTAATT
AAACATGGCAAATTAATCAGACGATAGATGAAGCTAGCAGATTGAGACAAAGAGATGGGG
AACTGAATGGATGAGTTACCTCTTCTTGCCAATGCACTCTGCGATGCTTGCGTGAAGCGA
GGTGAGAGTGAGCCTGCCCTTGGTTGGCAGGGGAACGACGTGGCCAAGCTGCTGGAGTAT
CTCCTTGAGAACATCCGCTGCTGTCCTCCTCCCCCCTAGGACCCATGCCCGTACTTCATA
TGGGCTCTTAATTTCCCTGTACACATGATTGGCAAGGAGAGTCTTTCCCATACCATGGAA
CCCCACAATGATAATCACCTTAAGCTGCTGCTCCTGCTGGATTAGATCCAGAAGCTCATC
ACGGGGACCGTCCATACCCACAGGCACAGCGATGGATGCCGGTGAATAGTAGGTGTCATC
GTCGACGTCCCCCTCAACTGCCGTCGGCCACTCTGGTGAAGAATTGCCGCTATTGTTGTT
GCTGTATGCTTCTCTTAGCTTCGAAGACTCTTCTGATCTTTTCTTCAGCACCCGGATCTC
GGCAGCAAACTTGTTACGGGCCTTCACGGTCTTCACCCGGTGGACAGCCCGGCTCAGCTT
CCCGGTGGCTGTGTCGGCCATGGTGACCTGGTGCATGAAGCGGTCGACGCAGTCCTCTAT
GGCGTGCGCCAGGTCACGCACAATATTGATCCACACCATATGTGCTTCTTCACTGCCACC
GCGGCAGCCACCACGGCGATCATCATCCTGGATGACGGCAGAAATCATAGCAAACTCATT
CTTGATGCATTCGATGTCAACCTTGAGGTTCGTCCGGAGCTCGTGCTTAGTGAGCAAGGA
ATCAAAGAGCTTCGGCACCATCCACTCCACCAATGAGGTGGCAACGACAGTCACCACAGC
CTCCATCTCTCTTTTTTCTCTCTCACTCTCTGTGTGTATGTGTTTGTTTGGTTGCAAGAT
CACATCATGGAGTTTTCATCGACCGGCGAGGACGACAAAGTCCATGGCAGGAATGAAGTT
GGGGTAAGCTACCTAGACCAGTTAGGAGGCTGAATTGAAAGCACTGTGCACTCACTGTAT
AGTAATGCTTTTGCATTGCCCTTGATACCGCCAGTAGACAACTGATGCTCAGATGCAACC
TTGGGACGTGAGGTAAACATAAAGAATTGGGGGCGGCTTAGAGTTCACTAATCAATTACT
AAAGCACGCGAGCATCCTCAATCTCGAAAGCTGTCCCCGGAGTTTTTAAGGCCCTGTTTG
TTTGAGAAGTCCCGGGACTTTTTTAGTCTCAATTTAAAAGTCTCTAGTCCCTATCTGTTT
GTTTTCAGGGACTAAATAAGGACTAGAGGTTATTAAATGATATGCAAAAAGACCATGTTA
CCCTTAATAATGTAGTAGTAGTTATTAAATGACATGGTAAAAATAGAGACATTGTTGGAA
AAAGTGTTAAAAAATTTCAAAAAGACCCTCCTACAAGGACTTCTCCAAATAGTCTCAAAT
ACCCCATTTTAATCCCTAAAAGTCCCTCCTGTTTGTTTCACATGGAACTTTTTGGGACTT
TTTTAGTCCCTACACCAANNNGTCCCTGGAAACAAACACCCCCTAAACTTATCTCCTGTT
TCTCCACCACATTGATCCAAGCAGCACAGGTACTAGTTTAACATAGCAGTTGCACACTGC
GTTCCTGCCAATTTGAAAGAGAAAAATATTACATTTGATGCACTAATGAACTCTGGACCT
TTGACGCCTTGTCTCTCCGTTATCAGTCTCATTGGTCCAAGCAGCCGGCGTTGCATTTGT
AGTTTATTTCAAATTGTCAGTTTAGCATGCAGTGAGGATCAACTTTCCATTTGCATTGAC
TCCAAATTGGCGATGCTATCATTCAATAGGGCTTAGGCCTCGTGGAATGCATGGGTGCTG
AGATGAGGTGCTAAGTGTGCATTAAAAACAACCTTAGCAACTAGTCTCCCCAATGCATAG
GTCCTATTTAGATCCATGGTTTGAGTTAGACTCCAAAGCCATCGAGTTGCCGTGTACGAA
GTACCATCTTCAAGAAAAAATGCGACGATGACGACGCTGCTGCCCGGACGAATCCTAGGA
TTTCTCCCGGTAGACGGAGGATAGTGGGGGGAGAGGGTCACCCGACGCCCTTCAAGAACA
TGTTGGTGCCGACAACACCCGACATGGATTTCTCCCGGCCCCTCGCACCCCGCCACCCAG
GACCAACCTTTGGCTCCACCACACCCGCCGCCCATCAACATGCGCCAACACAGTCACGAG
GACACCACCATCGTCTCACCACGGCCAACGAAGCGAGGCCGCCGGATCCAAACGAGACAC
CCGTAGACAAGGACCGACAACACCGCAGCCACGAGGGAGGGAACAACCTCCACCGGCTTA
GGCGGTAGCAGACCGGGCATAGCAGCAGAGGCACACCAGACCAGATGTCCGGCCGAGCCT
AGAACGGCCCGTGAAGCTCCGCCGCCAAGCTGCAACAGTCGCGGCATAGTAGCCGCCGTC
CCTGTCGCGAGGAGCTCGCGAGAACCACCGGAGAACAACCGAGCGCAGCCCCCCAGCAGG
CCTGCCCCGACCCAGATCGGGCCCATAGGGCCTAGATCTGAGTCACCCAGGCGCTGCAGG
CCGCCGCAAGCCATGGGCCGTCACCGCCGCCAAGGGGCAACGCCTCCGCACCGCCGCCGT
CCAGATCCGCGTCGGAACGCCGCCAG