Contig Data
morexGenes
Links



Map Locations of contig_1560674 (5349 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560674

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11243 5 4267 bp AK366160 Available Available None
MLOC_11245 1 439 bp None Available Available None
MLOC_11244 3 2028 bp AK370235 Available Available None





CDS Structure of MLOC_11243






CDS Structure of MLOC_11245






CDS Structure of MLOC_11244






Contig Sequence (5349 bp)

>contig_1560674 5349 assembly3_WGSMorex_rbca.fasta
ATATATATATATATATATGTTTATATGCTACCAACCAGCCTTTTGTACCAAACTTCCCAC
ATGCCCTTTGCTTCCAAAAAACAAAACAAAAAAAGCATGATGTACATCCTTAGTAGGTAT
GTAGCATATGTTAACATAACATTCATCATTTTCTTCTAGCTAACTTCACAATTTTCTGCT
ACCTAACTTTGCCTTCTCGTCTTGTATGAACCAGCTACCTGCCATTGCCACATATCTGTC
ATTTGAAGAAATCTGTGCTTCAACTTCAGTAGAGGAGAATGAGGCTTGTGTGTGTAAATG
GCCTGAGATTCAGGCACCTCAGACCTGCGTTCCTCGCCGTCTTTACAGTGTTTTTTCTTT
TGAAATGGGAGAAGGGGTCTCTGTACAGTCCTGGTATCCTCCGACCGGAGTCATTAGTCT
TGAGTGAGTTATATCCAGGCCCTCTCAAATTATAAGCCCAAGAACTAATATTCTTTCAAG
ATCCTCTCTGTGGGTCATCTTTGGGACTTGTTTCCCCAGTAAATTTCTGTTGCTCACTCA
CAGTTTGTAGATCGGAATACCTCCATGGAGGAAGATCTCCTCATCATCGATCCGTTGGTG
CAATCGGTCGCTGAAGTAAGAAAGGAAACCATTTCTGCACCTCCACCTCGAAACATAGTT
CATAACTCTGAAGATGTCATTGATAACGCTGGAACAGCACCTCCTCAGAAGAAAGGTAAT
TCACTATCTCACACCCTTTGCTAGCTTGTACTATTGGCTTTTGAGATGTATTTTGTCGGC
TTTTGAGATGTATTTTGTTAAGCTTTCTCCTAATTTTTTTGCTTCATCGATATTTTAGAA
TGTGACTACAGGAATGGAAAATGGGTTCCTGATAACCACAGGCCACTGTATTCTGGCGCC
AGATGTAAAAGATGGCTCTCTGAGAGCTGGAACTGCAGATTGACACAACGCACAGACTTC
GCTTACGAGAAATTTAGATGGCAACCTGAAGGCTGCAATATGCCAGTGTTTGAAGCTGCC
CAATTCTTGACAAGGTATATGTTGCTGCTCCTTCAGTTTAAATTTGCTGGAGATGCCATG
AGCTACATTCTTTCACGAAGGATTTGTAGAGCTTTTCAGGTAATCAGATCATATATCATA
CTAATTTAGACATGTTTCAGAATGCAGGATAAAACCATTGCTTATGTAGGCGACTCCTTA
GGGAGGCAGATGTTCCAGTCGATGATGTGTATGCTTGGAGCATCTGGGAAACATCATTCA
GATGTGGAAGATGTTGGCTCCAAGTACGGAATGACCCAGGCACATCGTGCAAAACGACCA
ACACGGCCCGTAGGCTCGGCCTACCGATTCCGGAGCACAAACACGACCGTCCTGTATTAC
TGGTCATCGACGCTCTGCGATCTGGAGCCTCTCAGGCGATCAAATCCAGCTGCCGGTTAC
GCCATGCACCTTGATCGCCCGCCTTCGTTTCTCAAGAAGAACCTTCACAGGTTCCACGTC
CTGGTTCTGAACACCGGGCATCACTGGAACAGGGGTAAGCTGAAGGCGAACAAGTGGGAA
ATGTATGCCTCCGGAGCACCGAATAACAACCGAGAGATCGCAAGCATGTGGAAGGCGAAG
AACTTCACTATACATGGTGTTATGAAGTGGTTAGATGCCCAGCTTCCTAGCTATCCCCAC
CTGAAGGTGTTCTACAGGTCACTGTCACCAAGGCATTTCTTCAATGGGGAGTGGAACACC
GGAGGCACTTGCGACAACAAGGATCCTTTGGCCAAGGGTAACATGGTGTTTCAGAATCAT
TCTCAAGATGCCGACTCCGAGGAGGCGGTCAAAGGCACTAGGATCAAGCTCTTGGATATC
ACCGCGCTTTCGCGGCTACGCGACGAAGGGCACATATCCAAGTACAGTATCAAAGCTACA
CCAGGGGTCCAAGATTGCTTGCATTGGTGCCTTCCTGGTGTTCCAGACACATGGAATGAA
GTACTGGCCGCTCAACTGTAGGCAGTTAGCTGCTGTCACGGCAGGCTCATAGGTTTATAT
TGAGCTTAGCCCGTCTTTAGAAGCTTAAGCTTTGCTCATCGTAAGTTATGATCAGCTAGC
GAAGGCATCTTTCCATCATGAACGGAGTACAGTTCAACAATATTACTATTCATCATGTAA
CACTAACATTTGTTATGGCAATATACAGTTCAAGAACATTCTTTTCAACATGAAACATTA
TGTATAAAACCACCTCCGTTCCTAAATAGGAGTAAGTCATAAGTGACGTGATATACTTGC
ACGTTCAACAAAGAAACAAGATAAGAATACATCCAGTATGACAAGCTTAGAGCAAGTACC
ACTCCAGGAAAATTCTATAAAATTGGCATATCTCCAGGTTAAACAGGCTTACAAAAAGGA
GGCTACAAAGTACAAACTGGCAACGATCAAAGTTTTGAGAACACAAACACCCCAACAAGC
TCAAAAATACCGATATAAAGCACTGATGGTCAGAGTCATAACTTTAGAAAACAGGACAAA
AAGCTTTTTGGTATCACCAAACGCAGATGTGACTAAGCAGCGGCATCAAGACAAATCCAA
GCCATCCAGACAGGATCACCACTTTCGACAAGTTGTCAATCATAACTGGCATTCAGAAAC
TTCAACAGTTCATTGCGCTTGCTCTCAGCCGCCTTATCTTCCTTGGATTTCTCAAGCTTC
ATCATTATCTACAAATCAAGTCAAATAGTTCATACTCAATAGTCCACTTACATTGGAATG
ATTTTCAATCTAGCAGGTACAAGTACAACCCAAAAGATAAGCATCAAAATGGTAGAAAAA
TCGTCCTCCTCACCTTTTTACCGGAGATAACACTCCTTTTGCCGCTTTCCTCCTTCTCAC
GACCAAGGAACTAATAAAGAAAATAAATTGCATTTAAAAATGATGATAAGAAAACAAACA
AATGAAAAGGCGCACAGGAAATATTTATACCTTGGAAAGCTGGACCGGACCGCTAGAACG
TTCACTCTCTTTCTTCTGTATAAAGCTCCCGCATTGAAGAGAACAAAACATAACAACCAA
GACAACCAGCAAGCCAATACACCATGTTGTCACCCGTTCACGAATCCCAGCTCCAATGTC
AAAGAGCCAACCCAGAAACAGGTAGCAAGAAATATAAGGATCTCTCATGTGGAAATAAAA
AGGATAAGAGATATTTCTGTTGCTAAGACAGTGTGTGGTACATGATACTGAATATTTCAA
TTCATATATAAAGTGTACCAATGATCCATCCATCTAATATAGACAACAGTTGCTGATTTC
CAGATAATGATTATTACATGTGATAAGTTTAATGTATCACAAAATTAAGCCATATAAAAG
GTAGGTTTTTTAGGTAAGTAGAAAATTTACCTCTCTATGTTTACTCTTGTCCCGTTTATG
ATGCCTATCCTTGCTTCGCTCTCTTTCCCTAGACTGCCAGAATGAGGATACAGTAAATCA
ATGAGAGGCCAAGTACTAGGTGTATGCTGAAAAAAAAACCACAAGACATCAAACATATAT
GAATTGCTGGTACAGTACCTTCCTTGATCTACTGCTCTTCTTATGCTTACGTGATCTGCC
AGATGCCTCGCGGTCGCTATCATAAGAGCTTGTGCTACTACAGAAACAATCAGATACTTC
AATATGCTAGTGTGGGGTCAACCTGAGAAGACTAAAAAAAATTGCAACCAGAAAAAACCA
TTACTGAATATAGTCTAAAACACAAAGGCAGCATTGTCCATATCTCATCCATGAAGCTTA
GACAGAGGGTTAATGGCTGAAAATTAATAGAATAAATTTTCTCATGCAACTACTACCCAC
TATTAATCACAATCTGAATCTCCTCAAAGTCTGGCCCTAATCTAGCTAATGCACTAAACC
ATCATGTGTCGTGACTAAAAAGATCGCAGCAATTAAATATTAGATCACTGCAATTTGCAT
AACGAGTATCCCACCCTTCTTCAGAACCACTCGATTCAGGTTCACCTAAACTTGTTCCTG
ACTGCAAGGGAGAGGGATCCCAATTCCCTACAAGCCAAAAATACAAACAAAACTGGAGTC
CTAAACTCAAATACAGTTCCCCTTGAACAAATACAAACTAATTTTAGTATGTGTTTCGCT
TGGGTTCGCAGAACAACTTTTCTTCAGGAAGGCGGCCTGCCCAGAGTTTGACATCATAAT
AGCTCAAATCACAGAGAAAATTTCATCAAAGAATAAGATGTCGATTTGAAATGACCAGAC
GACCCCCACCTCCACTTCTTAGAAAATATATCAGCACCCTCAGCTCGTATCTAAGAAGTT
CTTATCTTGAGTGACTTTTATTAACTGATGAAATAAAAGTTCTTATCTTGAGTGACTTTT
ATTAACTAATGAAAGAAAAGAACACCGCTTGTTACAACTTAAAAGTTCCGGATTTAGATC
ACAACCATTCTCCTCCCATAGTCTCCTTATCACCTCACATGATTACATTCCTTGATCAGC
ACTACAGCTCTATCCCCATCAATAGCAATCCCATGCAGAACAGTAATTTCGCTCAATTTC
CAGCATATATTACTGTCAACGTTGGTTCTTTTCACAGGAAAAAATATCATCATAGAATGA
AACATCGACTGCCAATGACCAGATGGCCCTCATCTCCACTTCTTAAAAGACATGTCACCC
CAAAAATTGGTAAATGTGGCACTCACTGATCATTAATAAATAGTCAGCAAGCTCAACTCA
TATCTAAGAAGCCTTTCCTTTATACTCCCTCCGTCCCAAAATTCTTGTCTTAGAATTATC
TATATATGAATGTATCTAGTCACATCTTAGTATTTAGATACACCCATTTTTATATAAACC
TAAGACAATAATTTTGGGACGGAGGGAGTATCATACAAGAGATATCTGTAACAGAAAGAA
CAAAACGAAGCTAGTTAAAAGTTCCAGGTTCAAATCGCAACCATAGTTTTCCCCTTATCA
CCTCACATGCTTTCTGTCTTTGATCAACACTGCAACTCTATCACCACCCATAGCAATCTG
AAGTGCAGCATATACTACTGTCCTCGTTAGTTCTTATTACCCAGCCTAGGTATTGTATCT
CGGACTTGGTGCAAAATCTCCAACAAGCCCAATTCTAGAAGGAAGAGCTGCGTGTCATTA
CCCCTTTGATTCCAAACAGGAAATCGAGACACCGATGTTGATCTACGCATATATTTCCTC
TCACCCGACCCTCCAAAGTCATCCGCACCAACCGAATCTCCTAGATCACGAGCTCTTTCA
GCCTAACCCTAGCTAGCAACGGAAACCTATACACGGAGAGGGGGTGAGGAGGGGGAGGCT
CGCCTGTAG