morexGenes - Barley RNA-seq Database

Contig contig_1560617
Source Contig contig_1560617
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560617 (8080 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1560617

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11207	2	2098 bp	MLOC_11207.2	Available	Available	LOC_Os04g47480.1, FRAME:+3, EVALUE:2e-162, 13104.m04812 protein DUF630/DUF632 domains containing protein, putative, expressed
CDS Structure of MLOC_11207

Contig Sequence (8080 bp)

>contig_1560617 8080 assembly3_WGSMorex_rbca.fasta
TCGCCTACCCGCCGCCGCCGCAGAGCACGCTGCAGTTCTACTACGCGCGCAGCCGCCCGC
CCCCGGCCTCGGTCGCCGTCGCGCAGAGCGCGCCGGTGTCGGAGCGCGCGCGCTACGGCG
CTTTCGACGCGGCAACTGGCGGCGGCTACACGCAGTATTACGCCTACGGTGGTGAGCCGG
CCGCGGCTGTGCAGCCGCCGCCCCCGCCGCCGCAGAGGGCAGCGGCTCCGGCTCCACTTC
CGCCGCCCCGGGAGAGCTCGTCGTGGGACTTCCTAAACGTGTTCGAGAACTACGGCGACT
CGTACGACAGCTGCTACTACTACAACCCCACCACCACCACCACCGCGGCTACCGCCGCCG
CCGCCGCCGCGTACACGCCGAGCCGCAGTTCACGCGAGGTGCGGGAGGAGGAGGGCATTC
CGGAGCTGGAGGAGGAGGGCATTCCGGAGCTGGAGGAGGACGACGAGGAGACCGTCGTAG
TGAAGGAGATGGCGAGCGAGTACTCCACGGTTGGAAGCCGTCGCGGCATGTTCGGTGCCG
TCAACAACATCCCGGAGGTTGACAACCGGAGGAATGCACAACGGAGGCGACCAGCATACC
GTAATGTGGCCCCGCTGACACGAGAACCGCCGGCGCAGGGGGTTGTCGGCAATGCGGTGG
ATGCTGCCACCGCGGTTAAGACGCAGCTTGTTCGGGTGGCCGAGGCGGCAAGGGAGCTCG
CGCCGCTGCTCGAGGTCGGGAGGCCGAGCTACCAAGGACGCCACTCCGTTTACCACGGTG
AGCGACTAGTTCAGACTTCAGAGTCTGAACGATCTGATTCATTTTCATGCCAATATATCT
GTGGTGCATTGTATGGCTCACTGTTCCATTGTTTGAAGCTGCATCATCGCGGATGATGTC
TGCAATCTCTGTGCCGCATCTGGGGTGCAAAGACGAGGACATGTTGGGCATGGTAGTTGG
CGAAGAAGGGAAGGTGGTGGGCTCCTGGAGCTTATCCTTGACACTAGAGAAGCTATACTT
CTGGGAGAGGAAGCTGTATGGTGAGGTCAAGGTATTATCATATTCCGTTCCGTTAATCAC
TTTTCTGTGAGTAGAAACGGTCTCCGATCTTGAGCTATGATTTAAGTTCTTCATGGAAAT
GTGCAATGGGTTTTGAATAAGAACGCTTGTGATTTGTGAGTATGAGAAAGGTAATCTAGG
TCAGGTTGCAATTCTGCCTCTGAAAACAGTGTCATCTGGGTCACCTTAATCTAGATCAAA
CTTTCCTAGCTGTGGTCTTCTGGATCTTTGGGTAGCCTTTTTTTATTTTAGTCTAACGGC
CTTTTTGTTTGAACCAAAAGCAACTTGAGCTGAATAATGGAGTCGACACCCTGTCCCTAC
TAGGGGAGCTTGATCTTTTCTGTGGGGAGATTTATGTCAAGCAAAAGTCTTGCAATTTTT
CAGCATCCACTAAATAAAGGCAAAACATTACTATTTTCACTTGTTGCTATTTAGAGGTTG
GTTCTGGTACTGGAGTACTCTGTTACATTTTTGTGTGTACTTTAGGAGTCTAGGTGGTCT
TGGCATGATAATAAATCAATGATCAATTAGATAATATCGACTACGAAAAGTTTTTTTCTC
AAGCCTACCGGCTGTATATATGGAAGAACTTGCCAGAAAACATGGTGCAATTGCTTGAAC
AATTGAGATTAATTATAGTTCTGGTTTTCTTTTCACCTTGATTGCTAAAAGCGGAATAGG
TATGCAAAGTTGGCTGTTCTTAAATTTTTTTCCTTTTATTTTGTAAGCCAAGTAAGAAAT
TTATTATAGCTTCCAACTTTGTTAACAAGGTCATCGTGTCACATTATGCAATTATCTTTT
TTTGGACTGGATCTGCCACTTTATTGTAACTATTTGTGTACCATTGATTAGGGTAGTGTC
CATATGCTTCTAAGTAGTACTAGTTGAGTAGATCATTTCTCATGTAGTCACCAAAGTGTC
CTACTTACACAGTATTTTTCCTTTTGTGGCATTTCTCATGTAGGCTGAAGAGAAAATGCG
TTTACGTCTTGCCAAAAACTCCAAGAGATTAAAGCTTCTAGATCAAAGGGGTGCTGAAGC
TCATAAGGTTGACGCAACTCGAAATTTGCTCAGGAAGCTGTCAACAAAGATAAGAATAGC
TGTTCGTGTCATTGCCAAGGTTTCAAGAAAAATTAACAAAGTAAGGGATGAGGAACTAGT
GCCACAAGTCAATACCTTGATCCAAGGGTACGTCTCTTTGAAAACTGTAGGATAATTGCT
CTAATTTTTTCATTGCGTTTTCTAATTTGTTGCTACAAAATGTTCTTTTCAGTCAATCAG
TCATAAGATCTGAACTGTTAATTTCATCTTATGCACTGCTATATGATTTGAATGGAGCAG
CCATTTGAATCTATCGAGGAAATTGTACATTTACATCTAGGATTGTTCCAAGAATCTGTC
AGACTATTGCATAATCTGTATTGCATTGTGGAAACATGTTATTTGCTGAAGATAAAAGTT
CATGGTAGCTCTTCTAATATACGTGCTCTCAATGGGTGCTATCTAATTCTAATAAACTGA
TCACCTCTTTCCAGGTTTGCAAAAATGTGGCAAGACAAGCTACACTCCTACCAGATTCAG
TTGCAAGTGATATCAGAAGCCAAGAACATGGCTTTGGTCATATCAGGCGGAAACGTCCGT
GATTTGGCAACGGAACTGGAACTAGAACTGATTAAATGGATCATCAATTTTTCCTCTTGG
GTGAGCGCGCACCGGAACTTTGTAAAGTCACTGAACGGATGGCTAGCACTCTGCCTCAAC
TACGAGCCTCAGGAGGCGCCCACTTACTCGCCCGGGAGAATAGGCGCTCCAGTGATTTTC
GTCATCTGCAACAAATGGTCCCAAGCCATGGACAGGATCTCCGAGAAGGATGTGATCAAC
ACAATGCAAGCCCTTGTGTCAAGCGTGCGCCATCTGTGGGAGCAGCAAAACCTGGATCAA
AGCGAGAGAATCGTCGCGGTTCGAGAGAGGGAGAAGTGGATCAAGATGTTGGAGAGGAAG
GCGGTGGAGATCAACAAGGATGCCGACGAGCTGAACAGGAAGCTGGCCTTGGTGCCGGGC
CAGCAGCAGAGCTTTCAGCGGTGCCCGACGATACGAACGTACGAGGCGCATTGCATCGAA
GCGAGCAGCGTGCACGTGAACCTGAGGCTGGTGCTTGAGGCCCTGGAGAGCTTTGCTTCC
AGTTCCCTGGAAGCTTTCCAGGAGATACCGAGGCTAGATGAAGAGGTGACAAGATCGTCA
AGAGGGAGCTCGAGGGTACGAACGGTGACTCACTAAAGTGATGTTCGAGTAGCAAGTCCA
GCTTGTGAGGTGTTGTCCAGAACTTGCAGTCTGTGGATTTGGATGAGTAGTCTGTAGTTT
CATGGTGATGCTGGTGGCCTGGTAGCGTTTTGGTGGGGGGCATCGGCGGTGCCGATATCC
GCTTGTAATTAGCTTTTGTTTCACTGAAGCGTCTGTGGGCTACGCTTGTGTAAGATATGT
CTATGGTGGTATGGTGGTGTCCTCTTTTCTAATGGAAAATGTTGGGCCTAGGTGATCGTG
CGCTGATGATTATTACAGAAAAATGTCAACACCTCCTCGCTAGGTGGAAAGCAGAGACGA
TCGAAGCCAAATTATTATATGGTATACAGAGGTGGCAGCATTGTGCCCTTGGTTGGGCAC
TGTAAACTGGAGGCTCCTAAGTCTTGAGGCCAAGTAGTTTATGGACGTGCTTTCTGTGCA
GAAGATCGAAGAGCTTGGACGGAGCGTTGTGTCGTTGACAATGTGTCCCGCCAGCGCTTT
GGGCAAAACGATAAGGACCGGCGGAAAATTTTCAGCACGAAGTTCTGGCTGAAGAACCTT
GGTCCGCGTTTCATATAACTGAATGGTTTTAGTGCTCTGCGTGATGGTTGCTTTGCGTTA
GTCGTTTTCAATTGCTGCACACGCATATTTGGGGACTGCTGCTACAGCAGTAGCACAGCA
TGATTTAGTTGGTGTTATTATTATCAGAGCGAAAGATCCGCTGTGCTCCGTCGTCAGGTT
CGAGTGGATTTAACAAGGGAACGAACCTATGCTCTGAATCTGAAGTTCAGGCTGATATAC
GTCCGTGTTTGCAGATCTAAACTCTTCATCGATTATGAGCTTCTTCTTTTTCTTTTTAGA
AAAGAAGGATTACCTCTGGCTTCTGTATCGATCATGAACTTCTACTGGAGATGCTGTAAG
CTTCGGTGGACGTATGGATCGTGGTGGCGGTGATGTGCATCAATGTAGAGATACCATGTT
TTTTTTTTCTGTCGTTATTTTTTGGGGAGTTACCTGGACGGTGGTCGATCGCCGATCTCC
GGTCGCTGAAGCGCAATCCCCAGCAAGTACTTGTACTGCAGTTTGCAGATCAACTGGTGG
CAATGGCGTGGCCGGCGGCATCGTGCCGTGAGCCCGTGACTCGAGTGGTGGAGGATGCAG
GGGATGGACATGTATCGCTTGTAGCGAACCTCGATAGGCGCGGTTATGTGCCGCTTGCTG
CGAGCCACAAACGTGCCTCGCCTTTGGGCCACGCCTACAAGGCGCAGTGAAGGGCCGGCG
CAGTAGGATATGGCTCGTCATGCTGACATCACTCTAATTATCTTTTTAATTTTAATTTTA
CTTATTTTAAAGGGCGATGCTACGCGTCTGCCGGAAAAGATCCGCCGCTTCGACGGTCTT
TTGATCTGACGTTATCCAACGACATGTATCTTTTCTCACCATTGCGACAAAGACATTGTT
ACAAAATCCTTCTATGCAACAATACCATATGTTGTAAAAACATTTACAACAGGGATTCAG
TTACGGAATTATTTCTTTTTTGTTTCAACTTTTTTACAACATGGGTTGTTGCGGAACGAC
TTATGCAACACAGATAATGTTAAGAAATATTTTTTTGGTGTTAACTTTTTTGCAACTTCG
ATGTTGTTGCGAAAAGACTTCTACAACGCAGACGATGTTGCGAAAAATTTGTTAAGGTGG
TAGAGGCAGGCGTCGTTCGTCAATTGAGTCAGAAGAATTAGTGTCGTGATTCCGGATTCG
ATATAGACGAAAGACTCGAGAGTTTCATAACATTTAGTGTGTCATAACATTTGCATCTAA
CGGCTGCACAACTGACGGAACGTTATGCGTAATCGGTCAGTTGATTATAAGCATTTACCA
GTTTTAAATGCGTACAGTTCAAAATTTTACATTTACTTAAGGACATTTTAAAATGTTAAC
CTAGTATAAAAATACTTAACATAGTTTTCGTAAAATGTTGATATATTTCAAAAAAAAAAT
GTTCGTGCCAATACGAAAAATGATGCCGTGTTTAAAAAAAGCTATTTTGTTAATGTGTAT
GCAATTGAAATAAGGTCTGCGTAATCTAAAAACATGTTTCGTACCATTCAAATATGTATG
TGGAATTTATGAAAATATTCCTTCATTTCAAAAGATTGTCTGTGACATTTCAATGTTTTA
TAAAAATGTCAAAAGAATGTCTGCATATGTCAAAAAAATGTTATTTCCATTACAAATGTA
TGTGACGTTTTAAATAAATACTCATGTATTTCCAAAAAAATATACATACTTTTTTTCAAA
AATATATACAATACAAAGAAATATGATTGCATATTTAGAATTTGTTTATTGAAATTATAA
TATGTACAACGTGTGTTTGAAACAATGTTACCATGAATTAAATAGTATGTATTAAAAATA
CACATATTGTATTTGTAAAATGTCTAAGGTGTGCTAAACAATTATGCATTGTGTACTTAG
AAAAAGTAGATATGTGATCAAAAAAGAAAACTGATAGAAACAACAATGGAAAAAAAAATA
AAAGCAAAAAGAAAAAAAAGAGCAATGTCTAGTTTTTGCCTTTCATACTTTTTGGTGGCA
ATTAGTTGAGAGCCTCTTAAGGTAATTTTTGTTCGGCTGAGGGTGTGCACCGTCACGTGT
TGCATGTTGGACGCTCCCTTGAAATTTAATTATTCATTATTTTTTATATGTGTTTTTTGA
TATTTTTTTGTTTGCTTTTTTAATTTTTGCTTTTCATGAAGACACAAATTTGTTTACGCG
GAAGGTATAGTTCTGCCTCTCGAAAAAGAAAGAAAAACACATTTTCTTATTCTGCGAGAG
ACACATATTTGATTCTCATGAATACCCAAGTTTGCTTCCTGAAGAGAGAAAGAAAGTGCA
AGAGTCACAAATTTGCTTATCATAGAGGCAAAAGCTACTCCGCACGAGACATGGTTGTGC
GTTATGGAAAGAAAAAAATAAAAATATTTTCTTCCGTGGGAGGCACAAAAAATAGAAAAA
TGAAAAAAATGCTTCTGACTCGGGCTTTTTCCTTCTGTTTTTATGGAAAAAAAGTTAATC
AAAACCTTCTAATATAGAATCTAGTTTCTATGATATTGATGCAAGAAATCCAACAATGAA
AAATGTTCAGGATTTGAATGCACGCTCTAAAAGATATAACATTTTGAATAAACGAATCTT
TAAGGTTGTGACAAGTGATACACATACAGTACGTTATTTCTCGGAACATAAAAAGGTGGA
AGTGATCTGTGCAAGGGTACCCCTTAATTATTAATTTCATGGAGATAGAATCCCTGTTAT
CGTTGATGGGAAGCACGTTATCATGAAAGTCCCAATTAACAATCTATGTCAAGATAATGC
TATAACGGGGATCCAATCTTAGCTCGTTAATCAAAGATGGCTAAGGTTTCCTAGTCATGG
ACAAGAGTTGTCATTTGATAATGTGATCATATCATTAGGAGAATGATGNNNNNNNNNNNN
NNNNAACCTTAAGCATAGCATTTGATTGTATCCAGTTACTGCTATTGCTTTTTTGCATGT
CAATGTATCTATTCCTATGATCATGAGATCATGCAACTCACTCACACAAATTCTCGTCGT
AGCCCAGAGTGCATGTGACCCTGTTCACCAGAAGACGTCCAAATTGGTGTGTGGAGCAGA
GCCCCTCGCAGGGTTCGAGAGAGACAGAGGAGGTGGAGGCATTTTTTCTCGACCCCCTCG
CCTCCATTTGCCATCTTAGCCCTTTTGTTTTGGTCGTAACTGTCTACAACCATTTCACAT
TAAAGGTTGGTAGGTTTCATTATAGACGTATAGCTTCTGACCAACTATTTTTTATCGTAA
AAAAGGTCGCAGATGGGAAACAATGACCATTCAGTAACCAATATGGAGGGTCACAAGATA
GCATATTTCTTGTAGTGACAATGATGTGGTTGTGTCAACGGTTTGCAGATCATGCCTAAG
CTTCTGGAGATGTGTGGGGGTCCAGTTCTGCCTTTGTCCATCGAACAACGGAAGAAAGGC
CCCGTCGAGATCTTGATTGCGGCTTTACTGTCAACATCACCCCTCGAGTCTAGCCACATA
CTTGATGTCGGGAAGTGTGGTGATTTGGACGTTGCAATCTCTCTCTCGCATATGTCCATT
GGGTGTGAGGCGTCAACCAGCCTACCTCTTAGTGCCATGGAGCGTGGAGTTTTAGATATT
GATGGCCTTCCCTCATGTCGTATGCGACCATTGAGCAAGCGATGCTTGTGAGTGGCACGA
CCGTTGAGCCAAGTGTGTAGGCACCTACTTCAAATCCAGATCCTCTTTTCGCGAAGAAAC
TTTATGACTTGTTCGTTAGTGTGGAGGTTGCTAGACCTGGTTTGGGCAGGCCGATTGCTT
GCCTCTTGACGGGTATGCCAATAAGGGGCAAACAAAAGAGGGTGGCAAAAACAATAGTGG
TGTCATAAGCAAGGCGTCTCTGATCGCTTGATGGATGATATTTCGTCTCTAGACCCATCC
TCTTGGATTGGGTTGTCCTTGTGGGTTGGGAGGTGCATGATCACTAGTAGAAAACAGGGC
TATCATTCGGCCCTGGCCAGCCCATTAGTCCCGGGTCTTCAAGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCGTAATAACTTCGTAAAGCAGACACTATACGAAGTTATA
CGAAAAAGAAGAAGCAACAGCAGAACAAGACAAGTAACAA