| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1560561
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_11173 |
1 |
1976 bp |
MLOC_11173.1 |
Available |
Available |
LOC_Os02g29630.1, FRAME:+1, EVALUE:4e-35, 13102.m03231 protein retrotransposon protein, putative, unclassified |
| MLOC_11175 |
2 |
1029 bp |
MLOC_11175.1 |
Available |
Available |
LOC_Os12g18630.1, FRAME:-2, EVALUE:1e-29, 13112.m01977 protein expressed protein |
| MLOC_11174 |
1 |
1284 bp |
MLOC_11174.1 |
Available |
Available |
LOC_Os09g15410.1, FRAME:+3, EVALUE:4e-30, 13109.m01456 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_11173
CDS Structure of MLOC_11175
CDS Structure of MLOC_11174
Contig Sequence (5309 bp)
>contig_1560561 5309 assembly3_WGSMorex_rbca.fasta
GCTTCTCAGCGGCCCGACCCGGGGTAAACTGTCATGTTCTGTGTCTTCCTCACCATCGAG
TGAGTTCCTTGCCATTCTCAACGAGTAGCGAGCTAGTGAGAGATCTTCGTACATGCCCCT
NNNNNNNNNNNNNNNNNNNTTTGCGGAGCCCGAAATCCGACATGAGTGACGTGCGATACG
CTCCCTTTGCTGCAGAGGCATCGTAACTGAATGTTGTTGATGGACTCACACACGATGGAC
ACAACATCATGGCCGACCAACCGGAGAGGCCCCCTTGTGTGGAGATTTCAATGAAACGGT
CGCGCCAATCGACGATCATGGGGCTATGCTCCTCGAGCCAGTCCATCTCGAGGATGGCGT
CGTAGGTGCCGAGCGCGAGTACCTTCAAGTGAGTGAAGAACTCGTGGTCGTGCGAGTACC
AAGGGCAGTGTGGTACAAAAGCAGAGCACATCATCTCACCGCTGTCGGCGACACGGACAC
GCCTTGGCTTGAGAAGAGATCGGACGCCTGATAGAGACGATGCGAGCCGCGCGTTGATGA
AAGAGTTCGAACTGCCTGAATCCACTAGCAAAAGCACTTCAGGTACTTGAATCCAGGCGC
ATAACTGTAACGCGTTTGCAGAAACTCCGCCAACCACTGCTGACAGAGAGATGGCCATGG
CAGAGTCATCTGCATCGCTCAGAGGTAACAATTGGATGTCGATGAAGTTGTCAAGGTCCA
ACATGTCGAGGAGCTCCTCGACGACGTGCAACTATACAGAAGTGAGGCAAACATGATCAT
GCCCCCACCTCTCACCGCACTTGAAGCAGAGACCGTGGGCTCGTCTGCAGTCCCGCATTG
TCTTAAGTTTCGATGTGTCGTCGCAGGCCGCATCGATGCCACGACGATCGATGGTCGTCG
CTGGCGTCGTATGACGAGTCGGTGGTGGTGGAAGTGACAGCGAGATGGCCGCCTCTCATG
GTCTTGGTAATGAACGAAAAACCCCATCAGCAACCTCCTCCTGGAGCAGTGCCAATGCGT
ATGTTGTATCCAAATCAGGTGGACGTTGCACCAGCATCACATCCCTTATGTCGATCCTCA
AGCCCTCAACAAAATGAGTGAGAAAATAATAAGGGTGTATAGAAGAATTCAAATGATTTG
TAATAAGTTTAAATTTCTCTATGTAATCAGGCACGGTCGACATTTGCTGCACTATGTTTG
GGTTATGTCGATCCTCAAGCCCTCAACAAAACGAGTGAGAAAATAGTAAGGGTGTATAGA
AGAATTCAAATGATTTGTAATAAGTTCAAATTTCTCTATGTAATCTGCAACCGTCGAGAT
TTGCCGCACTATTTTTGGGTTCTGCACTCAATTTCTCACCCGCATTTTGCAGGTGAAAAC
CCAAACCTCTAAAAAACTCTGAGAGCAGTATTTATTTTTTCATGCTTGGCATTGTTCCTT
CATTTGGGTTCTTATGGCTGCCCTCAATTTCTCGCAAGGCCGTCGCTGCCCTGTTGGCCC
CGCATGTCAGGTACGTTAACACTGGGCAACCCGGCTAAGTTTTTTTCTTTGAGACAAAGG
CAACCCGACCAAGTGCTATTACATCTCACCGACACGATACAAGCATAAACTAAAAGCTGA
TTGGTCCAAAAAGTATATGCAAATATCTTTTGTCATATTACCGACAGTATGTCGATTCTC
AAGCCTACCGTAAGTGTGCCTAATTTGGCTCAGAAAACTGCAAGAAATTGAGATGTCAAT
TATTATCAGAAATCAACAAAACATACAAAATGGCAAACGGCCCTTTCGATGCCTTGGCCC
ATAAACTGGCCGCTGATTCCCAATGATGGCTTTTCCTCACTGCTCACACTTGAATGACTC
TCAGTACGGTAGGAGTGGAACTGAAGCAAAATTGTTCCAGCACCGCAAGCAAATCCACTA
ATTTCAACCTGATGCAACTTTCTTGCGGATAACTTTCTTTCGCCGGGGCTTGGACAGCTG
TGCCCCATGCCCACCCTGCTTGATGCCAAGAAGACCAAGGCCTGACACAACTGCATCCTT
GGATATAAACCACCTTGACTCTTGTTGATCCGCCGGAGTAGTAACCTCCACTGGTCTGGT
GTATGCCCTAAGCAATCGATCAGAGCACTGTGGATCAGCTTCCTCTCCAAGCCATGCGCG
CCTTGACGATTCACCTATCTGAATATTCATCAATCTGCAGTAGATATTGCACCACGTTTA
ATGGTAGAACGTAGCCTCCACAAAATACTGCTACATAGAGCAGTTGCAGATTTCAAATTA
CATAAAGTGAATGGAGTGGCCAAGTAAAGTACACAAAATGGAGCTTTTAGAACTAAAGCG
AATATAAGAAATCCGGTTCAAAGAAGATCAAAGCACTTAAGCTATATAGAATTAAAAATG
CAACAAATTTCTGGTTATCTACTCTTTAATCTGAAAATAAATAGAACTTCTCTTCATTTT
TCTGAAAAGTCCATGACCGGAACTCTCTGTAAATAACCAACTCGCTGTTTACTAAGGGCA
TGAGCAGTGTGTCCATGTTTCAGAACTAAGCTAAGTAGCCACTGCATGGGGTTGACCAAG
TTAGGATTTTCTAGTACTGATACCCCGGCTAGCACCAGAACCAAGCTTTTCTGAGTAAAT
CGAAGTTTCTTGGCACGAAAGTAGTGATGCTTCTAGGTTTGGAAGTACTAGGCATTCTTT
ATTAGCCAGCAGATCCCCATATGGTTTTGAGAGAGGTACTACACACTGAAAGATTTTTGC
TAACATGGACAAGGTGTCATGACAATCATTGGTATCGGCACCAGTGCCACACATAGTTCA
TGCTCTACGCCGCATCATATGAACTCTAACCAACGGCCAACTAGTACAGTACACTGTCAC
AAGCTAAAATGTATGCTTTAATCAGATTTGAAAGCTTTGAAACCCAACAAATTCCAAATA
ATGTCCAGCGGCTCATGCAATTAAACAAACATCACAGTGATAATACATGCAACAAATATT
GGGGGCAATTCCATAGACTTTGAGAGGGCTTTTGACACGGTGGAGCATGGGATAATTTTG
GAGATACTTATGGCTAAGGGTTTTGATAACAAGTGGAATTCTTGGGTCCAGGAGTTGCTA
CCCTCTAGAACTTCTTCTGTTTTGCTTAATAGGGTTCCTGGTAAACATTTCCAATGTAGA
AGGGGGTTCAGGCAGGGAGATCCTCTGTCCCCTCTTCTCTTTGTTTTGACCTTTTACAGT
CTATAGTAAATGAAATGTTACACAGGAGGAAGCTGCAATTACACATTCTTGCCATGACTG
GGATTTTTCAATCATCCAATATGCAGATGACACACTGTTGATTACACCTGCTGTGGGTTC
TCAGCTTTTAGCTCTCAAGGATATGCTGGCCATTTTTCCTAGTTCCACTGGGTTGGAGGT
CAACTATCATAAATCTTCCTTGGTGCCAATTAACTAGGCTGCTAGGCTGGCTGGGGTGTT
TGCTTGTAATCTGGGCAAGATGCCCTTTACTTGGGTCTTCCAGTAGGTACTAAGAGACCA
AGAATTGTGGACCTTTTGCCACTGGTAGACTGTATGGAGAGGAGACTCACAGCTAGCTCC
TCCTTCCTTGCTCAGGGCGGAAGGTTGCAACTGCTTAACACTGCTATATCTTCTATGCCA
ATCTTCTTTATGTGCAGTTCGAAAATTCCACCTGGGATCCTTAAACAGTTGCAGAGAATT
CAGAGGCAATGTTTTTGGAGGAAAAATAAACAGGAATCTGCACCCTCTTTGGCTGCCTGG
GATTTGATTTCTAGACCTAAAAAGAAGGGTGGTCTGGGAATTTTAAATCTGGCTTTTCGA
AATGATGCCCTACTATTGAAACATGCAAACAAATTCTATAACATAAGGGAGATTACCTTG
GGTTCAACTTATTTGGAATTCGTACTGTGATGGTAGGGTACCTCATGCAACTATGGCATC
TGGCTCCTTTTGGTGGAAGGAATTTTAGGTCTGGTGGATTCCTACAGGAATGTAATAGGG
GGACACAGTCCTTTTTTGGACTGATTTTTGGCAGCTCTCTAAACCTGTGGTTCCTCTGCA
ACAAGGTTATCAAAGGTTTTTCTCTTTTGCTAAAGGACCCTTTATGAACTGTAGGAGGTG
TTGCAATGCTCTGATTTATCCACCTGCCTTTGTCTGATAATGCATTCCAGGAATTGCAGA
CAATTGAGGGCCTTTTGGCAAATTTTAACAGTGATGGGAATAAAAATGATATTTGAAGCT
GGAGGAATTCTGACAAGTGATATACAGCTAAGAGGTATTATGAGATCCACTCTCCAATTA
CTCCTAAGCCACTTCTGATGTGGATTTGGATAAGTTGCTGCACTAAGGATAAAGGTTTTT
GCCTATGTTGATCATGGGTAGGCTGAAACACCAAGGATATGCTGGAGAGGAGGCACTGGA
ATATAACTGATGGACATAATTATATTCTTTGCCCTACCCATTCTAGGGAGGACAGGAACC
ATCTTTTCTTTCAGTGTAATTTTAGTATCAGAATCTGGAATTATCTGCAAATTTACCGGC
ATGCTAGAAAGGATATGACTAATATTGCTGTCAAGGCCAGGAAAGACTTTGCCAAGCCAT
TCTTTGCTGAGGTGGTGTTTACTGCATGGTGGAATATTTGGAACACTAGAAATGACAAAG
TTTTCAGAAATGAAAGACCTACTTTTGGTAGATGGAGAGCTGGCTTCTGATATTTCATTA
TTGGCACACATGATTAAGGCTAGATACAAAGATAAACTTCTCAGATGGAGATGGGTATCC
AACTTATACCTCCTTAAAGGAGTTTCTCTCTGACCTTTTCTACATGTTGTAAGTAGACTT
TCCTTTCCTTTTTATTGGGCCTCTTGCCTTTGTATTTACCTCTTGTACTGCCGGAAGGAA
TAAACTCAAATGCTATGGGGGTTTTGCCCTGCAGTCTGAGATTTCAAAAAGAAAAATATT
GGGGGCAGTTAGAAAACAGGGAGAACAATCTTGGTCCATAACCTGCGAAAACCAGTTCTT
CATTTGGGTCAAAGATTCTGCGGATCAGTGGAAAATTTCAAATACCACTGCAGATTGCAA
GATAAGATCGCGGACCTAAATTACAGTGGTTTGTGCAGGTTGGGGGCTTTTTCGTACTGA
TGCTGCTCGGATTAGATGGAGGCAGGATTTTTTTTCGAGAAAACGCAAAGAGCCTTGCGT
TTCTTTGTATTGAAAAGAAGGGGGATTACAGCCTCCTAAGAGGTGATTACAGCATTGTTA
CAGGGGGTTTAGTGGACATCCCAGGATGG
