Map Locations of contig_1560558 (5085 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1560558

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11172 3 1545 bp MLOC_11172.2 Available Available LOC_Os01g42480.1, FRAME:-1, EVALUE:8e-175, 13101.m04361 protein Yip1 domain containing protein, expressed





CDS Structure of MLOC_11172






Contig Sequence (5085 bp)

>contig_1560558 5085 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCTCCTTCACCGCCGTTCACGAGATCAAGATCAACTACATGGTCACCT
TCAAGATGTTGACTTCCGACATCCTGAAGGTGATCATTTCCAACGATGACGACATTGAAG
TGGTGACCAAGTGCAAGAAGCACGAAAAGGTCTTCGCCGTGAACATCTAGAGATTTCTCT
GCCGCTAGATTGATTGTGTTGGCATGTTTTAAAACTTGTGTGGCGTTGTTTTGGTTGAAA
ACTTGTCATACTGTGTTAAACATGTTCTTATGCGTGATTAAGACCATTATGTGTGCCTCC
AGTGTGTTATTCCTGCTCTATTTTTTTATGTATGCCTCTGGTAACCTCATCACCTCCACG
AGGAGATTACCAGACATTTGAGTTGCATGTGACCAAACAACGTGCACTAGTATGAACACA
ACCCATGTGAGCAACCAAACACAATGCATATAATCGTTATCATGGTAGTCGGAAAAAGGA
TTTATGCAACCAATCAACATACAAATGTTAGTTTTTTGTCTAGGCTCACCTGGGACAAGT
ATGAAACGCAGGAGGCAAAAAAGGGTGCAGATAACAAAACAAGTGACTTTTCTATTGTAC
CCCCTCTGTTTCTAAATAGAAGTCTTTCTCACTAGACTACATAGTAAGCAAAACAAGTGA
ACATATACTCTAAAAGACATCTATATACATCAGAAAAATAAATGACATATACTACATCCA
AATGTAGTCTTTCTAATGGAATCTCTAAAAGGACTTATATTTAAAAACAGAGGAAGTACA
TGGTTATTTTACAGCTGACATGGAAGATTGCTACTGTATCTGAATTAGTGTCCAGGACCT
TAAGCATACCCAGCCAACGCGTTGATAATTTTTTTTACCAACCCGCCTCAGGAACAACCG
CAGTTGGTATAAACCTGAGGTAAATGCATGGTAAAATATATCTATTCATGATTTATTCAT
AATCTCAAGTGAATGGAACAGAAAGTAAACCACAAAAAACACTGTTTAACCCCGTAACAA
CCGAAGGATATTTTGCCATTTCTGTGATTTCAGAGGCTAATGAAGTAGTATGTGTTCGTT
CCTGAGTGTCACATGTAAGGTGGGATGTATGCCTGGAAAATTACATCAATGAATCGACTC
GACATGGAGAACTGCATGCTCATTTCTGACTAATACAAGAAGAGACACCATTTCCCTATA
CAGTTATCGTAAAGAAATAAAGTTTCAGCAAAACAGCCAACCCCAACTGCAACAAGAATA
TCCCTGCAACGATCAGAAACCACCGCTCCCCGGAGTTTAAGATGTGGGCACGGAGATTGA
CAGCAACGAAGGTAGCAGACATAAACCCAGCGACACCAGCAATAACCCATCTGAATATTT
CTATTGGCACAATTGACAGAAGCTGCAACACCAATGGAAAAGAAAAAAATGTTAGTCCTC
AGTTTGAATAATTGTCCCTCCTTTTACTTGCTTATGACACAGAAGTGCCGGCAGGAGAAA
ATCAAGTTCATTTAGAGAAACTACAGGTTTGCCTGGTAAAGAGGGCATGTCACCGGCAAC
ACCAAACCATATAAGGATCACTTCGTATCAGATAGATAACTTAAATACCACGAACTGAAA
CAAATTCACAGTTCTGTAAACTTACATCAAACTGAAATGGAAGCTAAGCTAACAAAAAAA
GTTCAAAGTCTATCTGCATATGATGTACTTACCGATGCTGGAATGAAGATGAATAAAGAG
TACCCATACAGGCACCACAATTGCACGAGTCCAGCAGGTGCTGAGAAGTACTTAAGAATG
ACATATAACCCAAGGGGAACAAATGTCACATAGCCATAGAATAAGCCCGCAGACCATGTA
ACCAGGTTAATATCATAGGTCCACTCTTTCTTATGCCATTTGTGGGAAAGGTAGGTGACA
AACGTGGCAATGGAAGCAGCAACAAAAATCAGGGTGGTGCATGTCCAGAATGGCCCATAC
CTATTGAAAACAAGCTATAATAAGAAATAGCAGGCATATACGCAATGTCAACAATTCCAA
AGTAAATTGATTAAGAGTTCAAATTTACAATTCTTAATGATTCACTGAATTCAACATATA
ACATTCATTAACAAAGAATTATAAATTTAATTCTTTGTATAAATAAAATCTTCCACAGAA
TCAACAGTTTAGATAAATCAAAACATGGCAAACTGCTAATATAAACCAGCACGCGTGGAT
CCTATTATTGTTGTGAAATTTAGACGAAGGCAATAAAATATGTGGCACAAATATAGTTGA
TAGCACCACAAAGAATACTCTGCACATATGAAGCTATTTATGGATGATCATATCCGATTA
TCAGTTACGATCACTTAATTGTTGTGAACCAGTACTGTCCTAACTTGATATGATTTAGGA
CTTGTATTATTATTTGCTGTAGCAAGGATCAGGATAGATACATTCACACCATGGTCACTA
TGCCACAAACTAATGAAATGAAACAGTCTACTTAATTTAACTGAACACAGATGTCCAACA
AAACAGCTGAAATGAAACCTTAATGTAAGCATTTGAATATTTCAAGGCTTCTACAAATTA
TACCTAGGATTAAAGGAAATAATCCTAGGAAATATCTGCCACTAAACGATTAGCTTTCCA
TCAGGATACCACAGGAAAATGTCCAGTATTTTACACTTGTAAGAAAAGCAAACAGCAACC
AATGTCACACCCCGTGCTGTGAAATAAACCCTGCTCCCTCTTCTAAAGAAAGGGCCTACC
ATTAGAAGACCATTTCAAGGCCAAGGAATTATCTTAACAGCATTCCGACTGTTCACAAGC
ATTAATCAACACTGTGGAGATCAGGTGAATCAAGAGCAATATCCCACTATACCAGAACCC
AGAGCTTATGGAATGATCAGCCACAGAAGGAACTGGTTCATGAAACTAAAACCTTATTCT
TAACTACTACTAGATCAACAACACACTCACATTCCACAACTAAGACGGTATATCAGGATT
CATGCCCAGCAAAAACACTAAAGCATTCTAACATTTTACTAATCTTGCCACATTCATTCT
CAAGCATACAGATCTTATTGTCAACAAGAGAATGAAGCAAACATATATAAAGTAGGGGGA
TGCGGCTAAAGCATACAGGTCGGGTTTGTCCGAAGTCTTCTCTGTGAAGTTGCCGCGGAA
GGGGAAGACCGACTCCCAGATCCTCTCCACGACATCGGACGTGTCAACGTCGAAGTAGGG
CTTGTAGGCCGCTACGGAGAACATGCGGAACCAGCCGCCCTGCGCGGCATCGTCCGATCC
ACCATCGCTACCCCTGCCTCCGCCTGCCCCTCCAACCTTGGACGAGAAGGTGTCTGCACA
GCCGCTAGAACAAAGTCAGATCCACGATGGAGATCCGATGTCAGAGCAGAGAGTAGAGAG
GAGGAGATCTGATTTCACCGTCTGAGTCAGTGGGCGGGCGGTAGGCGCCAGAGATCTTGC
CCTTGGCTTCAGAGGGTGGGAAGGTCTGGAGGTTGGACTCGGTGAACTTGATGGTCTGCG
GATCTGGCCCCGTCGCCGCCTGCGCGAGACGTGAGAGGTGAGGCGCGAGAAGAGATGAAC
GATGGGCGAGGGGTTGATGGGTGCTTACCGGGACGGATCCGGAGGCTTTGGGGTCGTCGA
GGGCGGAGTAGCCACCGCCGGACATCATCTTGACCGGCGACAGAAACAGCCGCGGCGGAG
AATCGGGGAAGGGAAGCTTCGGGGCGGAGCAAGCGTCCCGCAGCGGCAAGGCGAGAGTTA
GGCCGGCCGCGTGAAGAGATGGGTAAATGTCTTCTCGGATCTTGTTGCAGCTGTTATAAA
CGCGCGCCTTCTTGGCAAGTGAAACAGTGTCGGGTATTCCTGTTTTTTGTTAGAAGAACC
TGTTTATTTTAGAAAAAAAGACGCAATCGGTCATATACACAGGCATACATTCACTTCTAT
AAATGTACATATGCACATCCTATCTCTATGAGTACCTCCGAAAGACTGAGCCGTCATATT
GAGATTTATGAAATCACCGTAGGCGCCTCGTCGTTGATGAAAACGTCTTCTCCACTGAAA
ACGTATCGCCGGAAATCCTGAAATAAATCCAGGAATAATGAAAGCACGAGGACTTGATCC
CCAATAAGTTGAGATATCATTGTCTCTCTAACCATCCTACCACAGTCTCTCTCCATCCTA
CCACATGTTGGTTTGCACCTGTTTTTTTTTACATAAATGATGTTCTTGTTATAACTATCC
GGGTTGTTTTTACGAGGTCGGCCCGTGAGCACACGTGTCCCGCACATAATGGGTCTAACC
CAGCATACTATTTAAAAGGGTCGAGGTAAGGCTCACGGGCCAACATAGACGACACGTTTT
TTTTTCTTAATCTCACTTGTTTTTACCAAGTTATTGGACCAAAAGGCCAAAACTAGCCCA
TTTAGGTGTGTGTTGGGCCTTTGAGCACCTATGGTTCATGTCATGTAGCACTTGCAGGTC
TGTTTATAAGTGGGTCATGTTGTGCCGACAATAAACCCCACCTCGGCAGCCGAGCATGAC
ACGCATGGTAAATGAGCCGACCGACATGCATGTTTTTCGGCCTTTGGGTTGTTCTGAGGC
CATTTTCGCCTTTTGGGTCAATAACTTGGTAATAAAAATGAACGAGCCATGTCATGCCAG
CCTGCGGACCTCGCCTCGATGGATAACCACAACACATGGCTCACCACGAGCTAGGTACGA
CCTATTTAGTCATGTGTCGGGCATGCATGCTCGTGGGCCGGATCAATAACAACGACCCAT
TTGGCCACCTATAGTTGTAACTGTTGCGATATGCCCTGGAGGCAATATTAAATGTTATTA
TATATTTTCACGTTCGTAATTATGTTTATGTTGTGTGCTATAATTGCAATAGTCCTTGAG
TGTGTATATCCAAGAGGCTCAGATTAAAAATCATGTGCTCCTCCGACGATGGACTAGTAC
GTGAAAGCACAATTGCTCCCTANNNNNNNNNTGATAATTGATCACAATATATGCATCATT
GGACTAATGTGTTTTCCAAGTGTATTTTAGAAAAGTTCAAAAGAT