Contig Data
morexGenes
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Map Locations of contig_1560548 (5039 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1560548

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11169 2 1002 bp AK250719.1 Available Available None
MLOC_11170 2 1505 bp None Available Available None





CDS Structure of MLOC_11169






CDS Structure of MLOC_11170






Contig Sequence (5039 bp)

>contig_1560548 5039 assembly3_WGSMorex_rbca.fasta
TTGTTGTTAATACCTTCGTCTAGCATGCATTATGCGAAGTGATGGTACTCGTGGCGCCAC
CAGATGCTGGCCGTGGCCGCCGCCGGGTACCGCGCCGTCGCGCCGGACTGGCGCGGGTAT
GGCCTCTCCGACCAGCCAATGGAGCCGGAGGCGGCGGCGTACAGCGACCTGATAGAGGAT
CTCCTCGCCCTCCTGGATGCGCTCTCCGTCCCCAAGGTACCCTCCTCTAGCCCTGGATTA
TTGGCCATTTTTGGGGGAATCAATGTGTCCGGGTCAGGGGTCAGTTCTCGATTGGGAAAA
AGGGAATTCTTCATTCTTGGTTGGTGTTGTCGCTTAAAATCAGTGTGGGGATCCCGGGGG
CAGTTCCTGTAGTTTAGGACGGTAACAGTCACTGTGAGTTCTACGAGTAGTACTGTGACA
GAAATATTCAGATGGAACTACATATTTGAAGGGAAATTCTTAAATATGTAAGAAATTTGC
ATAAGTTCATAGAGGTTTTAAACCGGAAATCATGGTAGAGTTGGTATAGTTACAAACACA
TAACATTAAGGGGGTCATTCAATTATAGTCATGCATATTGTGCTTAAAATTACTCTCACA
CTTTCAAGAGGCAAATTTGTCACAGTTTGTTTCATCTGTAGTGTCAAAAGTTGATGTGTT
TTAAGCTGGCACTCAACGGGATGTAGGCAGCACAGAGAACCAAACCTGCCCTTCTGGTCG
ATGTTGAATTTAAACATACTAAAATAAGATAATTCTCTCACGAAAAGAAGTGTTATTCTT
CAATGTTCTCTTCTGATAACTTCCGTTTTGCTTCACATCAGGCTTACCTTGTGGCAAAGG
ATTTCGGAACCATGCTAGCTTATGATTTTGCTCTTCGTCACCCCAACCGCACATGCGGTG
TTATGTGTTTGGGTATCCCTTTTCTTCACGGTGGCTCCTCCTTCACTGCCATGCCAGAAG
GCTTCTACATACTGCGCTGGCGGGTTCTTACCCTAACCTGAAGTTCCATGTCATAGGGAG
TTCTTCTCATGATATGATACAGAAAGCTTGTGCTGTGCAGGAACCAGGAAGAGCAGAGGC
AGACTTTGGCAGGTATGACGTCAAGCGAGTCGTGCGCACCATCTACATTCTCTTCTCTAG
AAGCGAAATCCCGACAGCGAAGGAAGATCAAGAAATCATGGATCTCGCGGACCTGTCGAC
TCCCCTTCCAGAGTGGTTCACCGAGGAGGATCTTGATGTCTATGCGTCCCTCTACGAGAA
ATCTGGTTTCGTGTATCCACTGCACATGCCATACAGGTAAAAGCAGCGATTACTAGTTTC
CATTTTCTTAAAGGTGCCTCGATTATGTGCCATTGTGGTGACTCAATAGTTTGTGGTATT
TTTGCTCATCAAATATTGACAGATATTGTTGTATATGTGTTGCAACGCTTGACAGGTCTC
TCCATAAGAGGCAACCAATTGAAGACCCAAAATTCGAAGTCCCGGTGTTCGTCGTCATGG
GGGAGAAAGACTACGTGTGCAAGTTCCCCGGGGTCGAGGCCGTCTTGAAGAATGGCACCA
TGGAGAAGTTTGCGCCGGATCTGAAGATCACTTACATCCCTGAAGGAGGCCATTTCGTGC
AGGAGCAGTTCCCGGACAAGGTCAATGATCTCCTCCTTGGCTTCCTCAAGGACCATCCTG
TGGCTTGACACACGGGGCCTACTATGCTCGGCCTGTACTCGGTCTCATAAGTACCGTACT
CCGTGCACATTCCGCGGTGTTATATATATATGTTCGGTCCGTGTTGTCCTCTAATAATCC
TTTAGAACGCCAGTGTTTAGTCCTCCTGTAATTGTGTAATTTCACCCAAAATTTATCTGA
ATTTCATTTCGAATTCCCAGGAATCGAATCGAATTGAAGATCGTTTCAGCTTGGTAGGTC
CTAACGTAGGCAGGCACATGCCGCAAGGGGTGAATCATGCCGTAGGTTATAACTCGTTAC
ACCAATCATGTTATCTTTTAGGAACTCCAATGTTTTCAACAGCAGCATGAGATTTAGGGT
GGCTATCCATTATTAGACTACCCATAATGGGATGTAACATAGAGTAGTAACATGTTTATG
TTATTATCTAAGTTACTACATTTACAATGAATAGTAACATAAGGATAGTAACATCGAGTC
TTTCATTTATTAATTTATAGGCTCATCTTGTCGGTATGCGTTATGTTACTCATAGGGACA
GTTATGTTACTCATAGGGACAGTAACATGCTAAGTTAGTTAATTTCTCTCTTCTTGTTAA
TTAGTTGTCATATCATATTTTTTGCTTAGGTGGCATCTATGATACTATCAATGTTACTTC
CATTATGGATAGTCTTAGTGCATTGCAAACTTGACCCTTGTCAATCAATAGGCAAACTAC
CAGCAAACCGACAAGACAATGCATTTTACATCACTCAGACCAAGACAATGCATTTTACAT
CACTCAGACCAGGCTATAAGGCCCTGTTTGGTTCCAAATAAGTCACCAACTTATAAATTG
AAAAATGTAAAAAATAACTTATTTTGTCAAACAGACCCAACTTATAAATCGTCCCAACTT
ATAAGTCATAAGTTGCTCCACCCCAATTTAAAACTTATAAATCATCCACTTTTGCATGGA
AAGGTGACTTATAAGTCAGATGACAATCAAACAGGTGTGACTTATAAGTCCGTGGTTTTA
AGTCACCTGACTTATAAGTCACCTAACTTATTGAAACCAAGCAGGGCCTAAGAGTAGAAG
GATATATTTTTGCCACAAGAGTCAAAGCAAATATAATGCATCAGGTAACGAACAGATCAC
TTCATAAACGCATTTCAAACATTAAAATCTCGTGACATGCCATAATACAGAATACAAGCA
TGTTAGTGGGTATCATTAACTCTTATGAGCTACAACAAGGAGCTTTCCTTCGGGTACATG
ACGACACCAAAAGCCAGCTGAACCGATATCACTCAGCCTTGTTCATGACAGCAGAGGGGT
TCCACAAGTCTTGCAGTGCACATATGAGATCACCAGCTCACTCAACGACTAGTAAACTAA
AATGGGTATCAACACCGCTTGCTTGGTATGAATGATTTTGGGGTCTCCACCAGGCATGCA
TGATACAATCATCAGTCAGGGGGGCTTAGGGCATCATGAACAAACTACTCCAAGCATTTA
TCTCAGCGGCCCGTCATCTACAACTCTTCAGCCCGATATTTGGATGACCTGCATAAGGAA
GCCGTATAAGGTAAGGCAAGATGGCGGCAAAATGCAAGGCAAACAATAGATTTGCAGGAA
ATACAATCAGCTGTTGAAAACCGATGTTGAGCTACATTTTAGACTCTAGACAATCTGATG
GGCATATTATACAATACTTCCCATCAACAAAAACAATAGGTATTGGAAACTTAGAATACA
TGAGCGTGGTAACAGTAGGCTGCACATGTGTCCATTGCAGCAACCAGAAAACATCTATCC
TTTTCAACCAAGGACCAGAAAAGATGTCATCTTGAGCAATTTGAAGCAATAAATTAAATG
TCCATGCTCACTATTTTGATTTTTTGTTGGAGAAAACACGGGCTCGCCAATTACAAGTGT
TGTTAGGTGATTAATTATCAGTTCCACACAAATTCGTTGGGAGCAGATCTATCATTCAGT
TTTACTGAGTTTATCAGCTCTAAGATCCAGCGACAGAGCCGCTGCCACCGCATGTAATCA
CTGTCGCTGTCCCATCCGTTGCTCAATCACTCGGCCAGCTCGCCTCCCAGCAGCAACAAA
AATGCACCCCAAACACGAATCATGAGGGTTTCAATATTAGCCTACAACACTTGCATGACA
TATATTAGCCATTTGTCCCCAATAACATGAACATCATACCACCGATATTAGAAGACTAGT
GATGCATACATTCATATGTTGAAGCATTACATAGCAGTTACCATGCACATAGATCGAGTA
ATGTTCTCTTGCTTTTTCAGTAATCCATCAAAATTGCAAGGTTGTGCGTTTTTGCTCAAA
AATAAGTCCTGGAGATGCAAGGCAACGGGTGAACCGCATATTGAAGTGTACATTTTTATG
CAGAACTGTACTTTCCACAAACTACACTTAACTGCACCGGGATGATTAAAAAATGTCAAA
TAAATGTTTACCTAGCCAACTTTATAGTAATCTATGCCATATTTTCATGGGCCAGATACT
CCCTCCATCAAAATAATAGGGCCGAATACGTTTTCCGAGATTACCTTAGACCGAGGGTTA
GCACAATAATACTCCCTCCTTTCCTAAATATAAGTCTTTTAGAGAATTCAATACAGACTA
CATATGGATGTAAATAGACATATTTTAGAGTGTAGATTTACTCATTTTGCTCCCTATGTA
GTCCGTATTGGAATCTCTAAAAAGACTTATATTTAGGAACTGAGGGAGTATATGACATGC
ATGTTACACAAAGCATACCATCGAATTCGTATGTGAAAGGAGTTTCTGATGACACAATTT
TTAATAACATGCTTCTCATATACTAATAATTGTATCATTGGTCAAAGGCAACCTCCAAAA
ATGTATTAGGCCCTATATATGTGGATGGAGGGAATAAGAGGAATTGTTCATCCTCACACA
ACTAGAGCACAATCCATGCACTTTCACTAGAGGTTAATAATGCATTGACCTCACTTCTTT
CTGATTTGATTTTTGGTGTCCTATATAACATAACGATAATGCTACTTCCTCCGTTCCTAA
ATATAAGTTTTTTAGAGATTGCAATACGGACTACATATGGATGTATATAGACATATTTTA
GAGTGTAGATTTCATTTATTTTGCTCCGTGTGTAGTTCATAGTGAAATCTCTAAAAAGAC
TTGGAGCATCTCCAGCCGTTTGGCCTCCAGTGCACCCGGCGATGGCGTTTGCGTCGACGG
CTTTTTCGGCTTGGGGGGGGGGGGGGGGGGGGGGTGTCGCCCCCCCCCCTCGGGGTGGGC
GCCCCACAGGGGGGGGCCCCCACCCGCTCCCCGCCCTACTACGCGCGGGCTGTGCACTC