morexGenes - Barley RNA-seq Database

Contig contig_1560528
Source Contig contig_1560528
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1560528 (4970 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1560528

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_11161	4	1293 bp	AK359455	Available	Available	None
CDS Structure of MLOC_11161

Contig Sequence (4970 bp)

>contig_1560528 4970 assembly3_WGSMorex_rbca.fasta
TCTATATACATCCGTATGTAGTTTACAGTACAATCTCTAAAAGGTCTTATATTTAGAAAC
GGAGGGAGTATTTGTTATGGTAAATGCTTATATTGTTTTATATAAACTTGTTTAAATTTT
ATGAAGTTTGACTTTAGTCAAATCTAATATGAAGAGTAAATAAAAACCGAGCGAGAACAT
GCATACCCTGAAATAAGAGTTCATGCATGCATCCATGCTGAGAGAAAAGTAGGAGTATAT
ATTATTGGGAATGCTAGAGTCCAAAGGAATGCTTCCCCTTCAAATTGCATGTGTTTCCAT
GTCACAACCCCGAGATAAGAACGAGTACAATTTTAATTGGGTTTTCATGTTTTCCATGGC
AACATGGCAAGGAATAGGCTGATATTTTTATTTTATTTTATTTTTTCTGCAGCATACTAG
GGATGGTATTTCTTTTCTCTGGCCTCTATGCAGTTCTGTGGGCAAAGAAGAAAGAAGGCC
AAGTTCTTCCTCCTGCAGACAGGGTCGTGGCAGATGGAACGGCAGACGATATAGAGAAAC
CACTCTTGCTTCCACGCTAGCAGGATTCTCTAAGTATATGGTTCTAATATCTAGACAGGC
ATGGTTCGTAGAGCAAAAATCAAAGATTGTATAGTTCTCTTGGTTTGATTTTTGTAATCA
ATTAGTACTATGTACTGACGAGATACTGCGATAGGATCGAGCAGCTCAGTAGCATCAGAC
TGTAGAGCAAAAACCAAAGATTGTATAGTTATCTTTGTTTGATTTTTGTAAACAAGTAGT
CGTACTATGTTAGGAACGCAGCTGAGTGGTATCAAATTGTAGAGCGCTGATAGAGGTAAG
ATGAAAAGAATACCAGCACGTTGAAGTTGCATTGCGCCTAGCTAGAGTAATTTCAAGCTT
GAACCTTGTTTGTCATACCGGAAAAAAGATAAATAGCTTGCTGAAAAGCTAGAGTCTAAA
CAAATGCTTCCTTCAAGGTGAATCTTTGAGTGTTATGGCAGAACCAGACCACAGGGTAAA
AGCTGGCTATCATAACGAGTCTGGTATCAGTCCCCAAGGCAAAATTGTCTGTTTACTGAA
TAGGAACGTACACAAAGAATTCATCAACTAAAATCCCAGCATTTGACGAATTTGCAGGGG
AATTTGCTGATGCAGTGAAATCAGTCAGGTAAACTCTTTACAACAAATCAACGTAAGGTC
TTCTTCAAATCCCAGGCAAGAATGCTTCTAAAGATTATACATGAACACTTTTCGAGTGCT
AAAATTCAGCAGAACCAGGAACCCTGGGGAATGGAATGGCATCTCTGATGTTGTCTATTC
CGGTTGCAAACTGTACAAGCCGTTCAAATCCAAGGCCAAAACCAGCATGAGGAACTATAA
CAGAAAAGGTTCAAGTTCGTTAGGTCCCATGACAAGAACAAAAAGCAGGCTACACTTTAG
GATATAGCTACCTAAGAATTTTGGAACGGTCTCTTACAACTAAACAAACAAAAAGCAAGT
TACTTGCACTGTCAGATGTTATCAACTTTTGCATGGTTACGATACTTAACCTGATCCATA
TCGCCGCAGATCCAAATACCACCAGTAGCTATCTTTGTTAAGATTTGATTCATCCAGCCG
AGCTTCAAGGTAATCAAGCCGTTCTTCTCTCTGGCTTCCTCCAATAAGTTCACCTACCTG
AATGTGAATACGACATAAAATATGATGACAAAGTTATTCTTTTAAATTCATAAAAACTTG
CCTTATACTTGATTCGTTCATATACTAACTAGTTTACTAGGATGCCGTGTTTCAGGCTTT
GCCTATGGGCTTACCCGGGGAACCAATAGGTCCATTGCAGCAACCGTTTTCCCGTCATCG
TTTTGTCGCATATAGAAAGCCTTAATTTCCTAAAGACAATGCCAGTTAGTTTAAGATATT
ATTAAATTATTTCTGAACCGGTTAAGTACTGCAAAGTGTACATTACAAACCTTTGGATAA
TCTCTAATTATTACAGGATGCCCGCCAAATGCGACTTCTGTGATATATCTTTCATGCTCA
CTTTGCAAATCCAACCCCCACTTCACCTGTGGAAGATATTTCAGAAGAATCAGAAAGATC
CTTTTTAGATATAGAAAATAATAATCATTAGCATTTCTGCTTTTCACTGTTGCTTGCTCA
GGGAAAGGTATTCAAAACATACAAGATACAACAAAACTTTGCAGTATGTGGAGCTTAAGT
CTGTACAAGCAGAAAGAAGACGGATAATTTTCTACATGCTAATACAAATGAAACACATCA
TCCTCAATAATAAGCAATCAAAATTTGTTCATTCAACATTAACATGGAGATTTCATCCAA
CACTGAAGCCAGAAAGATAGTGTACCCCAACTAGTATTCCATGAGTTGGCAATAAACAAG
CAAAGTATGCAGCCAATTTTTAATTATACAAAAGCATTTGCTCAAACTTCATAGACATCA
ATGAAATCAAAGTTCCAAAATTGTACTGTAGGTAACAATGAGAATACTATTGATAGAAGT
CGTGAATTACCGGGAACTCAAATTTCTTGTTGGAGCCAATAAGTAGCTTGATAGCATCAG
AATATGACATCTGAACAAAGTTTTTCTCAGCTACATTCTGCGAACAAGAAACATATCAAT
ACTTCAGCAGTCATAACCAAAGATATACACACCACTTCCATATATGCAACAACAGAAGGA
AACTATAAATTAGATATATACATTTAGTCTATCTATGATCCCTTTCTCAACCCACGTATC
AAAAAAATCCATATCTTCTTTGCAGTTCTCAAGAATGTACTTTACCTGCTTCGAACAGAA
CAGTAATTAGGTAAATGATGTAAGTGTAGATATCCGCTTGAAAATAAACATGGAGCATCC
ATATCACTGAAGCACAAAGTATCAAGCAACATGCGATAGACAAGGGCACCTACTACATAC
TGGAGATATGCACTTGCACACGCCATGTCATCATTTAGATCAGCAAAGGCAAGTTCAGGC
TCAATCATCTTCCCCAGAACACATGACCAAAAAAAACTGTAAATTCAATGCTCACAAATG
TAAGATTCTCAAATTACAAATGTAGAAGAATGTTTAAATACCCAAAATTCAGCCAAATGC
CTTGAAGTGTTTGAATTTTCAGCCCTAAATGTGGGACCAAATGTGTAAATCTGTAGAAAG
GGATGACCGCAAGGAAATGAGAAGATTGGTTTACAGCTGGTAAAAACTACAGGGTTAGCT
GTTTCGAACAAATCAGGCAGACAGAAGTTACATCAGAAAGGGCTGAAGCATATGTTTCGC
CATTCAGTTGTCCAGACACCGTCAGAAATGCTGGTTTGCAGAAGAAATCCTAGCATGTGG
ATGCAATTAATAACTAATGTTAAAGGAAAAGACAAAACATAGGAAGCATTAAGATTAAAT
GAACAGTAGTTAAATCAAACAGCATGTGCAGTAGCATATACATCACCAAAATGATTACAG
ATAAAAAATTGCTTATAGGGACTCGAGAGTATTTCACATTTGACCACTACCTGTGACCAA
TCGACCCTTCCATCTTTCGAAGGAATGCTGTTGACTAGGCAGCCGCCTTCAGCACTATTT
GAAAGCTGCAATACAGAAGGAAATAAAATCGAACAATTTAAACAAGATTATATGACGAAA
AACAAGTAGTAAAATGCCAAACTATAGAGCGTCTCATCATTCGAAAACCATCTTTTCAGA
TATGGATAACAAAATATGTGTAGACTGACGAGAGCGCGGAAGAGGACCGTGAGACAAGCA
ATAACCGACGGTTGGTGGCGAGACGTGTCGCCTAACATGAGCCCCCAAGCATTGAGTGAG
TTCCTACAGCTTGTAGACAGAACTCAGCACATCCAGCTCATGGATGGGATTGAGGACAGA
CTGGTTTGGGCTTGGGAGACAAACGGATGCTACTCACAGAGATCGGCCTACCGGGCGTTC
TTTGCTGGAGAGTGGAGGCCAATGAAGCCGCGCAAATCTGGCGGTCGAGAGCGCCGGCGA
CTTGCAAGTTTTTCGCCTGGCTGGCGGCTAGGGAGAGATGCTGGACGGCAGAGAGGCTAG
CGCGTCGACACCTACCACACCCTCCGACTTGCCCTTTTTGTGATCAAGCACCGGAGAAAA
TCAATCACATACTCCTCGGCTGCGTCTTTGCTAGACAAGTGTGGCTCTCCATCCTAGACC
ACTGGGACAAGCTAACTTGGCTGCCAAGCGCGGAAGCCAGTCTGATGGAATGGTGGACTA
CAATTAATCCACAGCCTAAGCTTAGGAAGGAGACATGGACCGTAATTGCGCTGGTGACTT
GGATGTTGTGGAAGCACAGGAACGATGTGGTGTTCAATGGAGCGATTCCTTCCACAAGTG
AGCTTCTCAATAAGATTGATTTAGAAGGACAAGACTGGAGGCTGGCAGGGCTGCTGCGAG
AGGGAGGATCGCTCCTGATGAGAGTAGATGAGTGGGATAGTAGTGAGTAATCAGCATGTT
GAACAATGGCTATGATAGCCGTGGCTAAGTTGTAAACTGTCTCGCCTTTCTAGGCACTTT
CTATCTATGATCTCGATACGTCAATCTTTGACGTATCCTTGAAAAAATAACTGAGAACTT
GGATTTAATTCAAAAATGAACAAATGACAAATACCCAATGATCTACTAGTGCACTCATTC
AGTGATTATCTTACACTTCTATTGTGAATGCTCTTGGGAAAGATCTATGTAAGTGCGTCT
AGTGCCCCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGTTTT
TGAGTGTACACAGGATCTATAAGTCGCTGAGGAGTTTTTGAGTGTACACAGGATCGACCC
CTAAAAATGTATATCTNNNNNNGAAGAAATTGGTCTGAAACTGAAGAATTGAATCGTGAA
GAATTTGCGATGNNNNNNNNNNTCCTCGTGAAGATATTGAAATTGAGGAA