Contig Data
morexGenes
Links



Map Locations of contig_1560482 (5922 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560482

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11141 1 2860 bp MLOC_11141.1 Available Available LOC_Os02g53860.1, FRAME:-2, EVALUE:0.0, 13102.m06162 protein OsSub22 - Putative Subtilisin homologue, expressed





CDS Structure of MLOC_11141






Contig Sequence (5922 bp)

>contig_1560482 5922 assembly3_WGSMorex_rbca.fasta
TGCTTCGTCTACGTCCGCGTCGCCCTGGTGGAGGTTATGATCCAGACATTGAAGATAATC
AGATCTCGAGGGCGTAAGTACCAGGGGAATTTGTGACAAACAGAGTGAAGTCCACCAGAC
CTGGTAATCCTTCAGTACTATCTGTTTCATCTTCCGAGTTATTTTTGGTTTGCTAAGTCA
CCGTTCTGTGCTTAAAAGTTCACCAATCTGTTGCAACCATGTTGGCCGAAGCTATAACCA
CCACTACCCGAAGTTTTTCCATTGGTGACCACCTAACCGACGAGGATGCTGCAACCGTGC
TGTCTGGATGCTGGAACCGGCACCCACCATTGCTGCATCTATCTTCAACAACGGCTACGG
CAGGGCGCTGCCCTGGCATCCAATCTTGGAGCCTCAGCGACGATTTGCTAGGACCGACGA
CGCGTTTTGCTTTGCTGCAAAGGACGGACCACGCGGAGCATGATGCTGCAACCATGAGCC
GGCAAACGGAGCCTGCCGGCGCCGACGAGCAGCGACGGCGAGCGGCGCTACGATGGATGG
CGACAGGAGGCCATGGATGGCGACGAGACGACGCGCTGCATGCATCGCCACTTCAATGCC
ATCCACGTGAACTGCTCCAACGGGACGAGCTCTCCAAAGACGCCTACTTTTATTTTTATT
TTATTTTTTAAAGAAAGGGGTTGCTCCCCTGCCCCATTTTATATTAAAATGAAGCAGCCA
CACGAACCATTACAGACTACCCGACCAACACACGTAAAAGAGAGATCACCAAACACCAGG
CATCACATGCAGGCATGTCTGGTATAAGGCCGAATACTTTTATTTTTATTTTGTCATCAT
CATCTGCTAAAGATGCCTAAACCACATCGATCGATCACATGTCGGCAACCTGGCTCGCCG
GCCAGGTGACGGCGATGGGGCTCGTCACCGAGTGCTCGCCGTCGCTCCACTCGATCGACC
CGAACGTGTGCTTCTCCGTGACGTTCCCAAACATTCGTGGGGCGAAGGTGATCGCGTACT
CCTGCGTCCCCTGCGTCGCGCTGAACTGCAGCTTCTGCGGCTTCACCGTCACGTGCACGC
CGGCGGGGCTGGTGATCTTGGCCCTGTACGTCGCCCTGGCGTTCCCGCCGACGTTCCGCA
CGACGCGGCGTTGCGTCACCGCGCGTTTCTCCGGGCCGAACACCGCCGAGAAGGCCGGGT
AGTTGAGGTCCCCAACGGCACCGGTGCCGGCGCGCGTCGAGCAGTTGGTCGCCGGGCTGA
ACACGGCCATTTGCTCGGCGCTGTAGCCGAGCGCGCAGAGGAAGGCGATGTAGTCCTCCG
TGCCGGCGTCGTACACCAGGCCTGGATCGGCGGCGCGGTTGGGGTCCACGTGGCCTGCCC
CGCGCGCGAACGGCGTAGACGCCTTGCCGGTGGACATGTCCCCAATGACGGCGCCGGCGC
TGTCCACGTTATACGCGGTGGTCATCAGGGCGGACTTGATCGCCGCCGGGCTCCACTCCG
GCCTCGCCTGCCGGAGCAGCGCGGCGATGCCGCTCACCTGTGGGCACGATATCGAGGTGC
CCGACATGATGTTGTACGGCACGCGCCTCGAGTCGCCGTCGAGCAGCGAGGGCGAGGTGA
CGCCTGCCCAAGCGGCGAGTATGTCCACGCCGGGGGCCGTGACGTCCGGCTTGAGGATCT
CCGGGACGAGACGACTCGGGCCGCGGCTGGAGAAGGATGCCATTCTTGGCGAAGGGGGCG
ACCGTCCGACGACCGTGCCGTGGAACACCATGGTCGCGACGGGGGATGCTTGCGTGCGCA
AGTACTTCTTTATCTTCTCGGCGGCGGAAAATGTGACGGCACTGACGGGGATGACATGGG
CGCTGGTTCTGGCCTGCTCGCCCTGTGCTTCGTCGCTGCCGAGGACTGCTCCGGCGCCAC
CGGCGAGTTTAACGGCAAATCCTTTCTCTGTCCGCCCGTTCACTCCGGGGTCGCACAAAA
CAATCTTCCCGGCAACCATGGTGGGATTGAGCTTCCCGGCTTCACAGATGTTTGAGCCCG
CGTCTCCGCCGTACACCAATGGTAGCTTTGTCGCCCCAAGCGGTTTGCCGGCGTACAGCG
AGGTGCCTATGAAGGTCTCGCCGTTGCCGAGAACGACATCCGCCGGGAATTGGCGGTTGA
TGGTGGACGCGGCGACAGTCAAGAACCACGGCGCGACGTTGACGACGGTGGATTCGCCGG
GGCCGGAGTTTCCCGCGGAGACTGCGACGACGATGCCCTTGCTAACAGCGTGGAACGCGC
CCACGGCGGTGGTGTCTTTGTAGAACTTGCGAGCCTTCATGGTGCCGAGCGAAGCAGAAA
TGACGTCGACGCCGTCAGCGATGGCCTGGTCGAAGGCGGCAAGGACGTCGGAGCTCGCGC
AGCCTTTCCAGCACGCCTTGTACACGGCGATGCGCGCGCTCGGCGCCGCGCCGACGGCTC
TTCCTTCGCCGTAGCCATACAAGGACGCGTCCAGCACGGCAGAGCCGGCAGCGGTGGAGG
CGACGTGCGTGCCGTGGCCTTCCGTGTCGAGCGGCGACATGGACTCCGTCTCGCCGACCT
CACGGCGACCCCGCAGCACAGCATCGTGCCCCTTTCGGAAGAACTTGGCGCCGACGAGCT
TGCCGTTGCAGTACGCGGAGGCGTTGAACTCCGGAGTCGACACGCAGCCGCCGCGGAACC
TGCGGGGCGGCGGCGGCAGCGACCGGTCCGCAGCGAAGGACTTGCGCCCCTCCGGGTACA
CGCCGGTGTCGATGACGCCGATGACGACGTCGGAGGCGCCGCCGGACGCCGGGAGCAGCC
CGGACGACTCCGAGAGCCGGAGGAAGGACGGCGTCAGGGTGGTGTGCAGCTCCTGTAGCT
CGTCGGGCACGACGGCGAGCACGGAGCCCGAGGACGCGAGGCGCGCGGCCTGGCGGGCCG
TGAGCCGCGCCGCGAAGCCCGTGGCGGCGTGCCCGTAGGAGTAGAGCACCCGCGGCGCCG
GGCGGCACATCTCCAACGGGATGCGGTTGAGCAGGAAGGCCGCGTACGGCCGGGTGGCCA
GCAGGCCGCGCCGCGGCAGCCGGGGCGCGTGCGCCGGCGCGACGTGCACGATGTAGGAGG
ACACGCGCTCCGTCTGGATCTCCTCCGCCGTGGCCATGGCCGCCGTTGCCGCGCCGATGA
CGGCGAGCAGTAGGCACAGGGGCCTGGTCAGCTCCATGGCTCGATACAGTGCCGATGCCT
CCGCGCAGTGGAGTTCGGGTAGGGGACGCGAATAGGCAGGCGGGTCAGCTGAGCAGCGCC
GGACGCCACGGGTTACGGGTGGCACTACGCAGACGGCATGGCATGGCATGGCATGTCAGT
TGCACATGGAGACGGTGAGAGATGGAGGTGGTGCTCGTGCTCCATCTGCTGTATACGAGA
ACGGACGTATTTTGTTTTGTACTTTTGCACTCGCGTGCTACTCTGCTCTATATTGTTTTC
CTAGCGGGCGTAATGACTGGTAGAGTGTTTTTCTACTTTGGAGTACCTATTTCCATGGGG
AGTGATAAGCGCCGGCGGACCGGAGCTAGCGATCGGCCGGTGTGGCATAGATCGTCACAT
TAAGCCTTTCGAAGTCACCTGAACCCTTATCCCACGTCACACATCTTCTTTCTCAAAACA
TTTTGTCCTACATCAGAAAAATACATGCATGACCCCTCCTTCCGTGTCGCTGGCTGCAGC
CGTCTCACGCGTTCTCGCGACTCTCCGCAGTTGCCACTGCCCTCTCGCCGTCATTACCAC
AAAATGCTTGTAGCTCTGGCCCACATGGATGTAGCTTCTTCAATACACGATTGCAGCTTC
AGCGACACCGTCGTAGCAACACCAAAACGGTTGCAGCTTTGATACACCTGGTTGTTGCTC
CGGCAACACGGTTGAAGCTCGCCTTGCTTGCCGTCCAGCATCCTAGCCTGGCGGTTGCAA
CATTTTGGATCGTCAATTGTAGCAAAAAATATCTTGATGGTTCTAGCAAAATTCACATTG
CCGGTTCTAACAAACGGCCTCGTCGGGCGCAGCACAACCGTTGTTGTAGCAATTTGTGTC
GCTGGTGGTAGCAAAAGTAGACGATTGTTGTAAAAAAAGTAGCCGTCGCCATTCGCTGAT
GCACGTTGGTTGGATCACACCGATGCAAAATCTCGGTTCATTGGTTCCAACAAAACGAAG
CGTTGAATCTAGCAAGAAAGGTTTCGTCGTCGAGTCAACGCAACTCACCACGTTGTCTTT
CGCACCTCGCCATGTTACCATTTGTAGCAAATTAAAACGATAATTGTAGAAAAATCACGA
CGCCAGTTGTCTAATGTAGCAAAACACAACACCGATGGTAGCATGATGCGATACAGGTTG
TAGCAAATTGCGATGCCATTTGAAGCATGTAGCAAAAAATGAAACAGTGATTGTAGCAAA
ATCGTGATGCGAGTTATCCAATCTAGCAAAATACAACATCGATGGTAGTATGATGCGATA
CTGGTTGTAGCAAATCGCGATACCGGTTGAAGCATGTAGCAAAAAATCAAACGGTGATTG
TAGCAAAATCGCGAGCAGTTCCCCAATGTAGCAAACACAATACCGGTGGTAGCATGATGC
GATATCGATTGTAGCAAATTGTGATGCCAGTTGAAGCATGTAGCAAAAAATCATGATGCC
GATTTTCGCTCGGTGCAGCGCCACCCCGTGGTCACCACGCTCGCCGTCCATGGTCGTCTC
TCCCATGACACCGGCTGAAGCTCCCTTCAATCAAGGTTGTATCTCTCAAAACTTGAGTGC
TCTTTGCAACGGACGACGATAAGGATGTGCTAGGGTGACACATTGTGTGGGAGAGAAAAA
AGTACATCGGTTCGAGCTCTCATTCATGGTGTATCTACTGCGGTTCATTGGGGAAGAGAG
ACCACGGTGTTAGGTTGAGGAAAAAGAAGATGGAGAGGAACGCGTGGAGGAAAACTAATC
TAAGGTGATAAGATACGGATAAGGGAGATACATGTGTGTTCGGGCCACCAGTGCCTGCTT
TCTACATGGACGCGAAGCAAAGATACGGCCGTAGGATCCCTCGCGATCCGACAAGTGCAT
GGATCTTTCCCCAACACATGATGCTTGCCAAGTAGAGAATGATTGATGTTGAAATAAGAA
GTTCACTCAACATGAAAAGTAAGCAACATTTAAATAAATAACATGAAAGTAAATAGAATA
TCCCTTCACAAAGGGAAGCAGGGATTTGCAAAGGTGCGAGAGCTCAATGTCTAAAAGAAA
GATGAATATATTTCTTGATGGTGTGCCTTTCCTATCAACATCACAACAAAGAATTTCAAT
ATCTTCCATGCTAAACACACTAATAGCGGTTCCCAAGCAAAATTGACATTTTTACCCCCT
GCCCTCCACCATTTAAACACATTCCATGGCTAGCCGAATACTTGGGTGCCCTCCAAAAAA
TCAACTTCCTAGAGGGAGTTTTTGTTTCTTCACTTTTGTATTATGCAGGCATGACATCCT
TTTTTACCAGCCTCTCTCGTCAAGTGACAAGTGAATAAACACCCATCATGAGAATAACCC
TCTTAGCATGGAAGATATTGACCGCCCCGTCACTCCATGAGTGATACGAACACACAAAAC
ATATGTTTATTTGAATTATTAGAGATGACACATGCAAATTCACTTGGAATGTAAGTGAAA
TACCATATATAGGTAAGTATGGTGGACGCTCGTGGAAGAAATTTGGCTCAAGGATTTTTG
GATGCACAAGTAGTATCTCTACTTAGTACGAAGTTTGGCTAGCAAAAGGTTACGAGCAAG
CACCACATGTTGGAAAATCTATAACAATATAACTTCTATGCAAACATTGTTGGGGAACGT
CGCATGGGAAACAAAAATTTTCCTACGCCGTAATAACTTCGT