Map Locations of contig_1560467 (10476 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1560467

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_11135 2 1941 bp MLOC_11135.1 Available Available LOC_Os04g28620.1, FRAME:+2, EVALUE:0.0, 13104.m02712 protein male sterility protein, putative, expressed





CDS Structure of MLOC_11135






Contig Sequence (10476 bp)

>contig_1560467 10476 assembly3_WGSMorex_rbca.fasta
TCTCGCTAAGTGAGCATAACTGTGCCGACGCTGATGGTGTGTGCATGTGTGTGTGTGTGT
GTGTGTGTATATATATATATATATATATATATATATATATATATATATATATAGGGTTTG
TACGACAGGATGCCTGTGTCTTCTAATTTGACGACGACAGGTATCGACACGGTGTAGTTA
GAGTTATCAGTGATTTACGTCTGTCACGGTCTATATTGATTTCTGTCTTTACATATCCAC
TTTTATCGATCTAGTCCTATTGTAATGTAGTACTCCCTCCGTTTCTAAATATAAGACCTT
TTAGAGATTGTACCATGAACTACATACGGATGTACATAGACATATTTTAGAGTATGGATT
CACTCATTTTGCTTCGTATGTAGTCTTCTAGTGGAATTTCTAAAAGGTCTTATATTCTGA
AACGGAGGGAGTATATTTGTATCCATTTCCTTCGTGGCCTCATATGCATTAGCAAGGCAA
ATGGAGATGGCTAATATTTCATACATGAGACTGGATTTTCTATTCTCTGGCGTAGAATTT
TTTTGAAAAAACATGATCAAACAAACTCAAAAAAAATCTGAAAATTTGAGACATCAAACC
TTATCAAGTGTTCGAGCTTCTTGCCAAATTTCAGCCACAAATAACACCAGAGGAGCTCTC
ACCAAAATAGTCAAAATCAATGTTTAAAGTTTTGTGCGCTGTTTGAGTAGCGATTTTGTT
TCATTGTGAGAGCTCCTCAGATGTTTTTTTCGGCAGAAATTTTGCCAGAAGCTCAAACAT
TTGACAAAGTTTGTTATCTCAAAATTTCACAGTTTTTTAATTTTGTTTGATCACGTTTTT
TCCAACTGTTTCAAACTTGGGTATAGTACACCCGAGAGTAGTGACACCTTTCCGTTCATA
CATGTGGCCACCTTCCCTCCCCTCACGTGTTGATATCGACCTACGATGAACCACCTAGCT
GGATCCCTTTGGAATACAGTTGAGGGTGTAGCGACGAAGGAGCTACACCAGTCGAAATAG
CTGGCCAGACAGGGGATGATGATGCGAATCCGTCGAATCATCAGACACTCATTCAATCCG
CGTCCATTCAAAGGTAGACTGTTCTTAAGGCGGTCCCAATACAACGGTATTGGTTGAGGA
TGCATAGTAAACAAGGAAAGATAGAGATGTCGATCATGCCTTAATCTATACACCGCTCTT
ATTGCAGAACCTAACATAAGTTCTACGTATTCTTTTTTTACATATCGTTCCAAAATGATA
GGTCATTCAGATACAAACCATCTAAATAGTAAATACCTATGAGTGAACAAAATACAAGAG
TAAGATTTTTTTCTCGAACCGAGCTCCTCCCCTTTCAATTACTTTCATAACAGAAATACA
ATGTTTTTCGGACTAGAAACAGAAAGAAGGGGAAGGATAAGAAGCGAGCTCGTGACAATA
CCAGGAAACCCACCGTCTACGCCTGTCATCAGGAACAATAGATTGTGGGCGAAAACCTGG
TATCATCAACCACCACGCATATCAAAAGCTAACCTACCAACATAACAGTACCACTGGAGT
ATCTCCATACATCAAACTACAGACCAGGCTCAAAGAGCGCAAACAGCTAAAAGATCAAAC
TATAACTACAAATAAGAGAAACTATCTCTGGTAGCCTACAAACATCCAGCAAGCGCCACC
AGCTCACCCACTAGCTTCATATGCATTACCACTTCTCCTAGCCTTCTTCTTCATCAGCTT
GCTCAGTAGTTTCTGGCATCGGCGACCCGCACAACAATAGCATCTGAGATGCATTCTCTT
TCAGCATTTCGGCGCCTTTTTTGATCACCTTCATCATCACAGGTTTTTGCAAGCTTGCCC
AATATTTAAGAAATGCACAGGCTGTAAAGACAATCTCAAAAGGAGTATTGATCCACTTCC
TCTCAAATGTGGCACGATTCCAGACCAACCATATAGCCCAGCAAATTGCGGCTAAGCCCA
CTTCTGGAGGTAAGATACAATACATTCGGAGTGCCACTCAATAAGAAAATTATCTACCAA
TTCTAAAAAAAAGATTTATCTACCAATTGGTGTTAGTAAATTACCCATTGCCTAACCAAA
CACCAGTACCATAAACTTAGCAAAAATAATAATTCAAGGGCTTCATTACTTCTCTCTCCC
GAAATATAATCGGTGATAAAATGTGTTGGGAGTGCCCTGAGATACCAACCATGTTAGTAA
ATCAAAAGAGTACATGAAACACCCCGAATGAAATAAACATAGTAAGCACCCATACTTAGC
AAAATCTAGGAGCCTAAATTAGACACCTCTCCTAGCACTCCTCTATATTCTTTTCAGAGC
AAGACATAGCTTTACTACGGATTAACGGTGGGCAAATAGACCTTGCAAACTCACCAACAA
CTCTCCAAGCAGCATAACTTGCACCTCTCCGAGCACCCACCTATATTTATTTCTGTCCTG
ATCCATTTTTATTGATTTACTATTATCAATATTTATATTATCTTTATATCCATATTGATC
ATCGCCTGGTGCGAGGTAGCAGTGCGAAAGCAGATGGCTAAGAATCTGTATCCATCGTGA
GTTTGTGAAACAGCCTCCCCCTCCCATCGAATGCTGATCTCGTCTTGCGACAAACTACCT
AGCTGGATTCCTTTGCAACACAATGGCGATGAAAGGGCTGCTGCGCCGATCGAAATAGCT
GGCTAGAGAGGGAGTGATGGAGCTGATCTATCGACTGACTAGGCACACGCGTCATGAGAT
GACCACCACAGGCGTCTCGTCATCCGCCGGTATGAGAAAGAAAGAAAGAAGTACGCAGCC
TCCGAGACACGGGCCGGGATTAGGCCACAGGACAGGGTAGATCGTCTAGGCACCTATTCA
GCACCGTGCAGTCTGGAGCGGCAGTGTAGCAAATTCTGAAAACGATTGATGGCAAGGCAT
AACCTCCTCCAGATGTTCACAACAGCAGGTCAGCCCAACCAACCAGCCAGCACACCCTGT
AGTCTACAAGAGAGAAGGAAATGTACATCAGAACGGACGCGTCGCAATGAAGGTGTGACA
GTTACATGCATCAAACCGGCATAAAAACATGCCCGTACTCCTTCAAATTAGTTAGTAGTT
GGTCAGCATTACTAGCGCAAATCATGCTATAAGAACTAAAATAAGTTAGGTTATTATGGT
TGCGGGTAGCTGTCTCGTGGGATTAACTGTAGCTAGCGCCCAAGTGTCAAAAGCTGAAAG
CTAGTAACACTGCAAATATGGTTGGTTTTCTAGGAGAGAGCTTGCCCATATTCTCCGACA
TGGATTGACGACGACGGGTATCAACACAAAGGAGGCATCTCTATTGGAGTTATTGGCGAT
TTACATCCATTGTGTTCTATATTCAATAAAATCGTGATCTACAGTTATATCCATATCCGT
CGTGGTCCGGTGTGTTGTACCAAGGCAAAAGGAGATGGCTAATATTTCGCACATATTGTG
GCCACCTTTGAAACAAATTGGATGGTGTGGCGATCAAGGAGTGGATCCATCAATTCAAAT
GCAAACTGCTCTTATGGCGGTCCTGATGCAACGGCATTGCTGGTGGAGGCCTAGCTAACA
GCGAAAGAGACAGATATCATATACTCCCTCCATTTCTAAATATAAGTCTTTTAGAGATTT
CAATACGAAATACATAACGCATGCAGACATATTTTAAAGTATAAATTTACTCATTTTGCT
CTGTATGTAGTTTATATTACATTATCTAGAAAGACTTATATTAGGGAACGGAAAGAGTAT
AATACTCTTACTGTGGAACCTAAGATAAGTTATACTTTTCTCCCACAAACGTTTTATATG
GTAGTCCAGTTATATACAAACCACCACGAGAGAATGGTGTTTTGGCTCTCGCCTCCATAG
AGGCCAATTTTTTTTAAAAAAATCAAAATTTGAATAATTTGGTTTAAAAAAATGTACAAC
TAAACAAGGATGTGAGCCAAAAAATTTGGGTTGAAATACTTTGAAACGTGACCTGTGCAA
GAAAGACAAACTCATGGTCTGAAAAGATGAATAATATATCATGTGTTAAAAAATCACAGT
TTTGTCATTTTTCCACAGCCCTCATTTCAACATACTTAGTCCTGAAAATTTACACACTTG
TGCATTATACCTTCATCTATCTATGTATTTTTTAGAATTTTTTGAAATGTAATAATACGA
ATTTTCACGAAATTTGAATTTTGCATTTGGAGGCCTCCATGGAGCAGGGCCTCCAAAAGC
AATTTGCGGCACTACGAGGGCTATATATCTAAATACCTTACTAGTTAACAAATTACAAGT
TTAACATACTCCCTTCATTCCTAAATACAAGTTCTTTTCGAGATTCCACTACGTACTACA
TATGTACGAATATATATAGACAAATTTTAGCGTGTATATTCACTCATTTTGCTTCGTATG
CAGTCCATAGTGAAATCTCTAAAAAGANTTATATTTAGAAAAGGAGGGAGTACTAGATAA
TACGTAATATATATGTATCTACCAATTAATGTTACTACATCATTCAATGCCTAACCAAAC
AGCAGGACCATAAAACTAGCATATATCAAGGGCTTACTTATGTCACAAAACGTACTAGAT
GATATAAATACTCATTTTATTGCATAAGAGGCAAGTTCAAGATAAAAAATGTGTCGCAAG
TGCCCTTAGATATCAATATATGTTAGTAAATCATAAGAATCTACGGAACACTTGTTGCCA
CATAAACATGGTAGTAAGCACACATACTTAGTAAAAACAGAAGCATAACTTAGGCCCCTC
TCCAAGCACCCGTCTATATTTATTTCTGTTGTGATCCAATTTATTCAATCTACTGCGATC
TACTATATTTTCTAGCTGAATGTCTGTGCGTTGCAACGGGTTCATACATATTCTAGTGGT
TCAACACCGACCGTGTCCGACATTACACCCACTATATTCTAATGAAGTAAGTGATTTGAT
TGAGGTAATGCAAAAGATTTGATTTGATTGCCCTCGTCCAACATATAGCTAGAATGATTT
GATTTGATTTGAGTTAATGCAATTACTTTAGACCCGCCAATGGGGGGATGGGAGGCTTCA
CCAACGGGAGTACAACCATCAAATATCCTTTAATAATAGAGATATCCATATCCATAATGG
CTTAGTATGTGGTAGCATGGCGAAACGGGATGGCTAATATTTCATATGTACTGTGCATCT
GGGACGCATCTCATCGAATGCTCATCTCGACTTGCGATGAATTACCTAGTTGGATCCCTT
TTGGAACAAAGTGGAGGGTGCGGCGGCGAAGGAGCTGCTGCCCCGGTCGAGATAGCTGGC
TAAGGACGGTCCAAATAATCCATCAACTCATTAAGCACTCATTTAATCTCCATCCACTGA
AATGCAAACTTCTTTCTGAAGGTACTCAGGGTGGTCCCAATGCAATGATTTCAGTTGTAT
GAACCAACTCGCTACCTAATCAAGCAAGACATACTGGAGCTGGGGCCTAGTTGACGAAGA
AAGGAAATGTATTCTAGATTAGTCTAGACATGACTATTATGGCAAAAAGTGGAACAATTC
ATGTTTTTATCTGACAAACATATTGAATGTTGAGTCATTTAGATACAACAGTAAGATACA
AACCACTAAGAAAGGTATGCCAAGATACAAGTTCAAGATGCAATGTGTTGGGAGTGCCCT
TTGCTAACAGAAAAAAAAATCATCGATCGGAATTACCGTTCGTAAAGCACCCAATGCTAC
AAGCTTACCAAGCTCCCATATATGCTTTGCAAAAACCAGGAGCTTAATTACTTTAGGAAC
CTCTCCACTGGAGAGCCAAGCTAAGTATGCCATAAAGCCTAGGACTAAGACAGCCATCTG
CCTAGAGGAGGCATTCATTCTCTCACTCATTTCAATAGTGACATAAACTTGTCCCTTGTC
TGGTTACAGCTCAAGGCCCAACCGAACAACAGGTGGCTACTCGACAGACTATAAGACTAG
CAACCGTGCACCCACATGACCTAAGCTACCCACAACGCAAGCACAGCCACGTCCTGGACT
GGCCGGCTTGACTCCACCCCTCCTCTAGCTTCCCAGAGAAACCCGGCCACCATCTTCCAC
ATTTTCAGGTTTGTCGATTCTCGGCCCTTATTATCACGGTAGCTTGCCATGGACGCTGGC
GCGGTGGCTGGGTGCCTCCGGAACAAGACCGTCCTCGTCACCGGCTCAACTGGCTTCCTC
GGAAAATGTATGCACATATATATACCATATATACATCACCCCTTAGGTACCATATGTACT
TATGCATATATATATAAATAATGTATTTATGCATGCAGTGATGGTGGAGAAGATACTGAG
AGTACAGCCAGACGTGAAGAAGGTCTACCTTCTGGTGCGCGCGCCGGATGCCGCCTCCGC
CGAGCAGCGTATCCTGACCCAGGTAAAGTCGATACATGTCATTGCTTTCGATTACCACGG
CTACATGCAGTGCTATGGACAGGACCTAACCTTAGATATGCATATATCCTTTACGTTTGG
CGTCATCTTTAGAAACTCGTGGAACTGGAAACTCATTTGGTTCGTCTGGTATCGTGAGTG
CAGGTGCTAGGGAAGGACCTGTTCAATACCCTGCGGGAAAAGCATGGGCTTGCTGGCTTC
CAGAAGCTGATCAAAGAGAAGATAGTTCCTCTCGCCGGAGACGTCGGGACTCGCAACTTT
GGGCTCGACAGCTCCAGATCTGACGACCTGTATCAGGAGATCGATGTTATCATCCATGGG
GCTGCAACAACTAGCTTTTATGAAAGGTACAACACTTGCTAAATTATTTGTGGAAAATAC
ACCTAAAACCGTAAAAGCCTTTCAGATATGTTTTTACAGTAGCTAATTAGACAGAAATTA
CAGACATTTAATCACGGGCACTTCTATACACTTATACTTGTTCTAATCATTTGAGTTGGG
GTCCGTCTAATTCCCCAGTATCAGCAAACAAAAAGAGAAAATGCGATCTAGTACAGTAAC
AGTTACATATATACATAAGTTCTATCTCCAAGACTACAACCATCCTGAAGTAACATGTAA
CCGATTTTTCCCCATCAGAATCAATACCATTTTGCAGCATCCAATTTGAATCTCCTCTCA
TATCAAATAGTCTTACTGACCAAACCTGCACGCTCATGTGTTTCCCTGTAAAGACATAGC
AGGATGTGGTGCTGGGACGACAGAAAAAAGAAGTCGAACAATTTACACTTTCAGTATGAA
TTATTTTGCATGTTTGTTGAATTCCATTGCATGTACAGGTACGATGTTGCTTTGGCATCG
AATGCATTAGGAGCCCAATATGGATGCGAATTTGCAAAGAAGTGTCCTAATCTGAAATTG
TTGCTTCATGTTTCCACTGGTACGTGTTTTGTTTATAGTTATACATAATACCCGGTCGTA
CACACAGTCAGAAATGGAGCAGAATTGTACAATACAATGAGTATATATATGATTGGCCAA
CTACAAAATAACCATGTGTTCTTTTGTCTATTAGCTTTTGTAGCTGGTACTCAAGAAGGA
CTTTTACTGGAGAAAGCACTCAAGATGGGTGAAACACTACGGCCTGGTTACCACTTGGAC
ATTGAAGCTGAGTTGCAGCTGGTTGAGAAGGTGAAGGCTGAACTTGCAGAGGCTAAGAGT
GGTAGTTCAGACCAATCATCAGAGAAGACAGCCATGAAAGAACTTGGCTTAAAGAGGTTT
GACCAATCTAAATGTGTTATTCACTTTATTTCAAGAACATATATGAAATTTTGGACATCA
GCATGTTATTCAACGTGCAGCTGTGAGAGCTATGCTGGTAAAAATAAGTTGTTGTATTTG
GAAATACTTCCAATGAAAAAACTAACACACCATTTTCACATGACTAATGTAAATAAAATT
TTATGTGCTGGTACTCAAAGTTAGAGTCATCTAACAAAACACTTTTTAAAAAAATTTATA
TTTCTGACGGGTGAGTATATTTAGGGAGAGCAGATAATAATTATAAATCAAATCACTTGT
GATAGTTATGTCATTAATAAGGTAGTTGTCATATCAAATGGTGCCACCTTTAGACCTCTT
GGTTTGGACCATTTTAGATCATGACCCGTACCAACTTAAAAAAGAAGTAGTTGATTTATT
ATGCCACATTCACAAGATTCTATACATGGCCATAGATTTATGACATTAAGAAGCTATATG
TATATGATTTGTGAGTTATAGCTAACCCATCAACTACTCTGGATTGCGTGTGCACTTTAA
GAAAATACTAATGAAAAGGTATATGAAATTAAGAATCTAATATTAATCATAAGTCGGTGT
AGATGTCTTGGCTTTATTTTTCATATGTACTTTCAGAAAACATTGTTCACTTGCAAGGGG
AGAGAGTGTGATGTATCAAAAATCAGCTTGACGCTACCTAAATTGTTTATATATTGTTGA
AGGGCTTGCCATTTTGGATGGCCAAATGTATATACATTTACCAAGGCTATGGGGGAGATG
TTACTTGAGCAGCAGAGGGGAGATCTTCCTGTCGTTATTATTCGACCGACCATGGTAACC
AGCACTTACCAAGATCCATTTCCTGGGTGGATAGAAGGGGCGAGGTAAGGTCAACATATA
AATGTACTGGCAATTTACAATTCAATGTCGCGCAACTATTTACTGCTGTAGAAGTATCAC
ACCACATATATATCCAAGCTGGACATCACCACAATAGAATATAATTTTTTCTACCATTTT
ATCTCCAGGACAATTGATGCTCTGATTGTCGCCTACAATGAACAAGCATTCCCATGTTTC
GTAGGTGATCTCAAAGACACAATGGATGCTGTGAGTAATACCCAATCGTATTAGCTATTA
TGGATGTAGACAAATTAATGGAGCAACCTGACTAATTGAATTGTATACTTAAACTTGAGA
GATACTGATAGTCCGTATATATAGGTTCCTGCAGATATGGTGGTAAATGCAACACTGGTA
GCCATGGCTGTTCACTGGAATGAGAAAGGGCAAGTCATTTACCACGTGAGCTCAGCAATC
CGAAATCCTTTGACCGGTCAAGTTTTTGAGGATGCATGCTGGGATTACTTCTCCATCCAT
CCTCGTGTACTAGAGAATGGGAAACCCCTCGAAAACAGAAGGCCATACCTGTTCAAGAGA
TTCGCTTACTTTCGTGCATATCTGATCCTGATGTATAAACTACCACTTGAGGTACATAAT
CATAGTTCTATAATTCATAAATACAAGCCAATATGGTGTTCGTATGATGAAGACTCACAT
TTTTTGTCATATCTTAACTTCAAATGAACAGATGTTGCATGCAGTGAGCCTATTATTCTG
TGGGTTGTTTTCCCAATATTATAACAAGCACAACCGAAGATACACCTTCTTAATGCTCTT
GGTCAAGTTGTATGCACCATATGCCTTCTTCAAAGGATGGTAAGATCATTTTCTGCCCGT
GCTACATTAATTACTGTCAAATTAATTTGCCATTTTGCATACCAAGACGATCTGGAATAA
TCTTGTTTGACCCCTACTTTGTCTGTATATATGCTGATCCAGTTTTTCTTTGATGTTCTC
TTGTCTGAAGCTTTGATGACACAAACTTAACAAGGTTGAGGAAGGAAGCAAAGATGGACG
GCAAAGATGGTAGCCTCTTCAACTTCGACCCCAAATCTATGGACTGGCACTCATATCTCT
TGAACGTCCACGTCCCAGCGGTCCTAATGTACGGCCGCAAAAATAAGGGAAGCGTATAGA
AATGAGTGGAATCTTCCAATTCTTGAGATGAAGGATAAGAATTGTTCTCCAACAAAAATG
TAAATCATACTGCTAAACATTATATTTGTGTGAAGTGAAGACATACACCATGTGATCTGT
CTGTATGTATTTATACTATTGAATTGAATAAAAAATACTCATAGATTCCAGTGCTTTTTG
GATGTGAAAACATGTGTCAATCAAATGATTCAAATCAATGCTGTGGAACATGCCATTTAC
AACCTATATAAGGAAGAAAGAGAAGCATCAGTTATTCCCACATGAAGGGAGAACAGATGC
TCAGATTGGGCACCCTATATGTCACTGGGACTAAGGATTGTTAATGAACAGTAATGACAG
ATGATTATTGACAGCGATGATGTACATATATATACCTCCTGAAGAGGCGCATCGCACAGA
CGCGATGGTTACAACAACCACGATCAAAACGACGCGTCCGTTGTATTCGGATGCGATCCT
TCGGGAGCCAAACTACCTATCGGTTCCACGGGCAGAGATTCCCTTTAATTAAACTAATTA
ATTAAATCCTAACACTCCTCTTAATCTCTGCTTCAATTATTCTTGTATCATCATCATCAT
CATCATCATAATCAACTTGATTAGTCTCCTCCAAAAACCCTGTAGAAAAAATATGAGGAG
ATATATACAATATGCCATCAAGAACTCCTTCCAAAA